Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000039.1:2706180-2711052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.9e-05 0.0073 17.2 1.6 1 23 336 358 336 358 0.93

2 9 2.1e-08 1.7e-06 28.6 2.7 1 23 364 386 364 386 0.98

3 9 9.2e-06 0.00075 20.3 0.8 1 23 392 414 392 414 0.98

4 9 6.5e-06 0.00054 20.7 1.0 1 23 420 442 420 442 0.97

5 9 3.2e-05 0.0026 18.5 1.4 2 23 534 555 533 555 0.96

6 9 3.4e-09 2.8e-07 31.1 1.6 1 23 561 583 561 583 0.98

7 9 0.0042 0.34 11.9 0.9 3 23 591 611 589 611 0.97

8 9 0.00011 0.0093 16.8 0.9 1 23 617 639 617 639 0.99

9 9 0.018 1.5 9.9 1.1 1 23 646 670 646 670 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.9e-05	0.0073	17.2	1.6	1	23	336	358	336	358	0.93
2	9	2.1e-08	1.7e-06	28.6	2.7	1	23	364	386	364	386	0.98
3	9	9.2e-06	0.00075	20.3	0.8	1	23	392	414	392	414	0.98
4	9	6.5e-06	0.00054	20.7	1.0	1	23	420	442	420	442	0.97
5	9	3.2e-05	0.0026	18.5	1.4	2	23	534	555	533	555	0.96
6	9	3.4e-09	2.8e-07	31.1	1.6	1	23	561	583	561	583	0.98
7	9	0.0042	0.34	11.9	0.9	3	23	591	611	589	611	0.97
8	9	0.00011	0.0093	16.8	0.9	1	23	617	639	617	639	0.99
9	9	0.018	1.5	9.9	1.1	1	23	646	670	646	670	0.95

Sequence Information

Coding Sequence: ATGGCCATAAATTTCTCGGCCTCCTTTGCGGCCTGCATAGCGGCAGGCCTGAAGGTTCCCCGCCAGATAATGTACTGCATCACACAGGACACGGGGCAGCCGTACGTGCTGTACAAGGACTCGCAGGATGCCGAACGCAATGCGGGCGCCATCGGCGCCAGTGCCGCCCAATGGGGCAGCGACATGTACCCAAACATTCAGCAACAGGCGCAACAACACCTCagcgcccagcagcagcagcaacagcagcagcagcagcagcaacaacaacagcaacaacagaatGCAACAGTCGCTGCgcaggcagcagcggcagcagctgctgcgggCCAGCCGCAGAGTCCACCAGGTGGCCAGGAGCCACGGGACAATGGCAGCGGCGATGGGCGCCAGCAGAAGGTATCGCCATCCTCCAGTCCGTATCCTTCggtccagcagcagcaacagcaacaacaaagagcgAATGGCAATGCCGATGAGGATGCCATGAATCAGCTTGCCAACCAACAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAACGAGCCGCAGCATGCGCCGGCGAATGGCGGCGAGGCGGGACAGGGGAATCCGCACGTGCAACAGAACGGAGGGGGACAGCCGCAGGGTGATCCCAGCAATGGCTTCCAGACGCCCGACTACTATGCGCCGCGTCATGGGGCGCCGCAGGGCGGCATGCTGGCGCCACCTGGCTTCCCGCCGTTGCACTATCTCAGCAAGGGCGTGCTGCCCATGGAACAGAACGGGGGCGAGTCGTATGCGCTGCCCGAGCTGCTGCcgagccagcagcagcagcagaatgGGGCGCCCCCGAATGGCGGCAACCAGAATGGTGGCCAGGCGAATGGCAATGCTAATGAGGGCGCAACGGCGCCCAATGGCGTCGGCGCCAGCGGGGTCGCTGCGGTCGCGACGGGGACAACGAGCGGTCGCACGGGACCTGGACGTCCGCACAAGAATAAGCCGCACAGCGATCTGCGGCTGTTCAAGTGCCTCACCTGCGGCAAGGACTTCAAGCAGAAGAGCACGCTGCTGCAGCACGATCGGATACACACGGATGCGCGTCCCTTTCCGTGCACCGAATGCGGCAAACGCTTTCGCCAGCAGTCGCATCTGACGCAACATCTGCGCATCCATGCCAACGAAAAGCCATTCACCTGCCCGTACTGCTCGCGCAGCTTCCGGCAGCGCGCGATACTCAATCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCCTGCCCCGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAGCATGTGCGCACCCACCAAGATGTCTCACCGCATCTCATTTTCAAGAACGGGCCGCATCCAACGCTTTGGCCCTCGGACGTGCCCTTTCCGGGCGAAGAGGCGGACACAAAGGGCGACATTACCGTCGCCAGCGGTGGCTACCATGACGATGATTCCCAGGGTACACCCGATGGCAGCGGTGGTTTGCACTATCCGTCGTACTTTAAGGACGTCAAGGCAGGTCAAAAGATTCTACCCGAAGTCCTGCAACATATTGGGGTGCGGCCAGCGAATATGCCGCTCTACGTGCGCTGCCCTATCTGCGACAAGGAGTTCAAGCAAAAGACCACTCTGCTACAGCACGGCTGCATACACATCGAATCCAGGCCGTATCCTTGCCCGGAGTGTGGCAAACGCTTCCGACAGCAGTCGCATCTCACGCAGCATCTGAGGATTCACACGAACGAGAAGCCCTTCGGCTGCATGTATTGTCCACGATTCTTCCGGCAGCGAACCATTCTCAATCAGcacttgcgcatcCATACCGGAGAGAAGCCCTACAAGTGTGGGCAGTGCGGCAAGGACTTCAGACAAAAGGCGATCCTGGATCAGCATACGCGCACCCACCAGGTAGGCGATCGTCCGTTCTGCTGCCCAATGCCCAACTGCCGGCGGCGCTTTGCCACTGAGAACGAGGTGACCAAGCACATTGACAACCACATGAATCCCAACAGCACCAAGGTgcgacgccagcagcaacagcagcagcaacagcaacaggtgcaacagcagcagcaacagcagcagcagcagcaacaacagcagcagcagcagaacaaTGCAGCCGCCTCGGCTGCTGTGGTGGCCAATCATTTGATGAACGATGCCAAGAGCCTGGCGGCTCAGCAATTcctcaataacaacaatccTGCCGCGGTGGACAACAAGGCGAACATATTGCCCGTGCGCAGCATGGCGGCGaatgcggcggctgctgctgcagttgcccAGCAGTCTGTGGTCAAGAATGAGCTATACTTTCCGCAGTGCTACGGCCCGCCCTTCCAGCATCCCTTCcatgcccagcagcagcagccaagcgCGGCACATGCCAATGGTGGCCCCACGCCGCCTGTGACCGTCACTGTGGCCAATGCGGTGGCACCGGGTGTAGTGGTGCAGCAGAATGCGGCTACCTCTGTGGTGGCCCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSDMYPNIQQQAQQHLSAQQQQQQQQQQQQQQQQQQNATVAAQAAAAAAAAGQPQSPPGGQEPRDNGSGDGRQQKVSPSSSPYPSVQQQQQQQQRANGNADEDAMNQLANQQNSAPNPNQSSNEPQHAPANGGEAGQGNPHVQQNGGGQPQGDPSNGFQTPDYYAPRHGAPQGGMLAPPGFPPLHYLSKGVLPMEQNGGESYALPELLPSQQQQQNGAPPNGGNQNGGQANGNANEGATAPNGVGASGVAAVATGTTSGRTGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCTECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGEEADTKGDITVASGGYHDDDSQGTPDGSGGLHYPSYFKDVKAGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNSTKVRRQQQQQQQQQQVQQQQQQQQQQQQQQQQQNNAAASAAVVANHLMNDAKSLAAQQFLNNNNPAAVDNKANILPVRSMAANAAAAAAVAQQSVVKNELYFPQCYGPPFQHPFHAQQQQPSAAHANGGPTPPVTVTVANAVAPGVVVQQNAATSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00509959;
90% Identity: iTF_00806116;
80% Identity: -