Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: su(Hw)
Assembly: GCA_035043065.1
Location: JAWNNI010000242.1:15063930-15066302[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0027 0.22 12.5 1.0 1 20 4 23 4 25 0.94

2 12 6.7e-06 0.00055 20.7 0.5 2 23 75 97 74 97 0.94

3 12 0.98 81 4.4 0.1 1 23 103 125 103 125 0.93

4 12 8.4e-05 0.0069 17.2 4.8 1 21 132 152 132 153 0.95

5 12 1.5e-05 0.0013 19.6 1.4 2 23 165 186 164 186 0.96

6 12 1.5e-06 0.00012 22.8 2.2 1 23 197 219 197 219 0.98

7 12 0.00029 0.024 15.6 0.5 1 23 225 247 225 247 0.97

8 12 1.1e-06 9.2e-05 23.1 0.3 1 23 253 275 253 275 0.99

9 12 8.5e-07 7e-05 23.5 1.7 1 23 281 303 281 303 0.98

10 12 0.0033 0.27 12.2 1.9 1 23 307 329 307 329 0.97

11 12 0.00024 0.02 15.8 1.2 1 23 337 361 337 361 0.91

12 12 0.00029 0.023 15.6 0.3 1 23 368 391 368 391 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0027	0.22	12.5	1.0	1	20	4	23	4	25	0.94
2	12	6.7e-06	0.00055	20.7	0.5	2	23	75	97	74	97	0.94
3	12	0.98	81	4.4	0.1	1	23	103	125	103	125	0.93
4	12	8.4e-05	0.0069	17.2	4.8	1	21	132	152	132	153	0.95
5	12	1.5e-05	0.0013	19.6	1.4	2	23	165	186	164	186	0.96
6	12	1.5e-06	0.00012	22.8	2.2	1	23	197	219	197	219	0.98
7	12	0.00029	0.024	15.6	0.5	1	23	225	247	225	247	0.97
8	12	1.1e-06	9.2e-05	23.1	0.3	1	23	253	275	253	275	0.99
9	12	8.5e-07	7e-05	23.5	1.7	1	23	281	303	281	303	0.98
10	12	0.0033	0.27	12.2	1.9	1	23	307	329	307	329	0.97
11	12	0.00024	0.02	15.8	1.2	1	23	337	361	337	361	0.91
12	12	0.00029	0.023	15.6	0.3	1	23	368	391	368	391	0.97

Sequence Information

Coding Sequence: ATGGCGAGGCACGTATGTGGTAAGTGCCACAAGATATTCCCGCGGATTGAGAGCCTGAAGATGCACTACGAATTCTGTCGCAGCGACAGTAGCCAGCACCTGCGCAAGGCGGATATGCTCAGGAATCTGGAGAAGATCGAGAAGGATGCTGTCGCCATGGAGAAGCACAACATATGCTTCTGCTGCAGCGAGAGCTACGAGAGCTGTCATCAGGGCCACATTAGATGCCCCAATTGCCCCAAGGCGTTCAAGACGCAGACCAGCTACGAGCGCCACATCTTTATCACTCACACCGAGCTTGGTGACTACCTCTGCTCCATTTGCAATGCAAAGTTGCGCAGCGGCAttctgttgcagctgcacGAGCAGCAGCATCGTTCGCGGGGCAAGCCGTTTGCTTGCAGCATCTGCGGCAAGGACTTTACGCAGCTGTGCCATTTGAAGCGCCACCAGAAGCACTCATCCTGCGCGACGAACGAGCCGGATACATTGAGCTGCAAGGTGTGCGATCGAGTCTTCCACCGCCTGGACAATCTGCGCGCCCATGTCAAGCAGCATATGGGTAGGCGGATGGTGAAGCGTTCCGAGTTCATGTGTCCTGTGTGCAAGAACTGCTTCTACAGCCCCTCCACGCTCAACATACacatgcgcacacacacggGTGAGAAGCCCTTCGACTGCGATCTGTGCGAGAAGAAGTTCCCAGCCTTGGAGGCGCTCAAGAAGCATCGACGTTATCACACCGGCGAGAAGCCCTACACATGCACGGTGTGCGGCGAATCCTTTGCCGTCAAGGAGGTCCTCAATCGCCACATGAAGCGCCACACTGGCGACCGTCCGCATCAGTGCACCGTGTGCGGCAAGAGCTTCATACAGGCCGCACAGCTGCGCACACACTCCAAGACCCATCTGCGCCCCTTCTCCTGCTCTCAGTGTCCAGAGAAGTTCAAGACGGAGAAACAACGTGACCGCCACCTGAAGGAGCACACTCGTCACAAGCGTGCCACCTTCGCCTGCTGTGTGTGTCCACGTAGATTCCGCAGCTTTGGGCTCCTCAAGAAACACATTGAGACTGGCGATCATTCGGCTCGACCCAATACATTCCAGTGCGCCATCTGCGATAAGCACCTTGCCAGTACTGCATCCCTGAGGAACCACATTGCCAGGGTGCACGTGTGCGATCCTGATGATATCTTTGGCTTCGGACCACCTGCCGCCAAGCgGATTAAAAAAGCCAATGTGGTGGAGGAGCAGGTAAAAGAAACTGAGCAGGACGTGCCGCCTGTCAATAGTATGTCAACTGGTCCGCTCATCCAAACGGATGCCAATGGCATTGTGGTGCGCGAGTTTCTGGTCGACGGCAGTGCTCAAACCCTTGTGGTCGAGAATGAAGACTTCTTCATGATTTTGCCCTTAGAAGGTGGCATTGCAGTAAGCGAGTTCAACCTAGAGGAGGTGTCGTCGGTGGTCGAGAGGCCGTCAAGCAATGAAGATGCAATCGAAACGCTTACTGAGCAGGATCTGAAGCTCAAGAAGAACATAGCCAAGTTAATTGAGGTGCTGGTGGATTCGCCAACACTCAGTAAATTTGCCTGGCCCAACAGCTCCGAGGAGATGGTGATCTGCAAGGTCATCGAGAGCTGTGGCTACGAGCTCTCCAAGGCTAGAGAGAACTACGCTCAGTTGGACTACGGAACTCGCATGCGCGGGTATTGCAAGTTACTTTTCGATGTCGTCATAGGGAATGATCCCATAGTGTCGCTGCCAAGCCATTTACCCATTGACGATGTTATCGAATATGTGGTGGCTGATGAGGAGCAGgatcaggctcaggctcaggagGGAGAAAATGATAAGGAAAAGCCGTTAAACTCGGCGCCGGACAGCATTTGTTCCCTATAA
Protein Sequence: MARHVCGKCHKIFPRIESLKMHYEFCRSDSSQHLRKADMLRNLEKIEKDAVAMEKHNICFCCSESYESCHQGHIRCPNCPKAFKTQTSYERHIFITHTELGDYLCSICNAKLRSGILLQLHEQQHRSRGKPFACSICGKDFTQLCHLKRHQKHSSCATNEPDTLSCKVCDRVFHRLDNLRAHVKQHMGRRMVKRSEFMCPVCKNCFYSPSTLNIHMRTHTGEKPFDCDLCEKKFPALEALKKHRRYHTGEKPYTCTVCGESFAVKEVLNRHMKRHTGDRPHQCTVCGKSFIQAAQLRTHSKTHLRPFSCSQCPEKFKTEKQRDRHLKEHTRHKRATFACCVCPRRFRSFGLLKKHIETGDHSARPNTFQCAICDKHLASTASLRNHIARVHVCDPDDIFGFGPPAAKRIKKANVVEEQVKETEQDVPPVNSMSTGPLIQTDANGIVVREFLVDGSAQTLVVENEDFFMILPLEGGIAVSEFNLEEVSSVVERPSSNEDAIETLTEQDLKLKKNIAKLIEVLVDSPTLSKFAWPNSSEEMVICKVIESCGYELSKARENYAQLDYGTRMRGYCKLLFDVVIGNDPIVSLPSHLPIDDVIEYVVADEEQDQAQAQEGENDKEKPLNSAPDSICSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00805346;
90% Identity: -
80% Identity: -