Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000213.1:8980544-8983869[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00024 0.019 15.8 0.4 1 23 267 289 267 289 0.99

2 14 0.00021 0.018 16.0 3.3 2 23 297 319 296 319 0.96

3 14 9.9e-06 0.00081 20.2 1.2 1 23 325 347 325 347 0.99

4 14 0.034 2.8 9.0 1.6 1 23 354 377 354 377 0.96

5 14 0.045 3.7 8.7 3.0 1 23 383 405 383 405 0.96

6 14 5.7e-05 0.0047 17.8 1.6 2 23 408 430 407 430 0.95

7 14 1.6e-05 0.0013 19.5 0.3 1 23 435 457 435 457 0.99

8 14 0.00098 0.08 13.9 3.9 2 23 460 482 459 482 0.94

9 14 0.0025 0.2 12.6 4.6 1 23 487 509 487 509 0.97

10 14 0.00062 0.051 14.5 2.2 2 23 512 534 511 534 0.94

11 14 5.6e-05 0.0046 17.8 0.1 1 23 539 561 539 561 0.96

12 14 2.8e-05 0.0023 18.7 1.6 1 23 567 590 567 590 0.97

13 14 2.1e-06 0.00018 22.3 1.1 1 23 596 618 596 618 0.97

14 14 4.7e-05 0.0039 18.0 0.3 3 20 626 643 625 645 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00024	0.019	15.8	0.4	1	23	267	289	267	289	0.99
2	14	0.00021	0.018	16.0	3.3	2	23	297	319	296	319	0.96
3	14	9.9e-06	0.00081	20.2	1.2	1	23	325	347	325	347	0.99
4	14	0.034	2.8	9.0	1.6	1	23	354	377	354	377	0.96
5	14	0.045	3.7	8.7	3.0	1	23	383	405	383	405	0.96
6	14	5.7e-05	0.0047	17.8	1.6	2	23	408	430	407	430	0.95
7	14	1.6e-05	0.0013	19.5	0.3	1	23	435	457	435	457	0.99
8	14	0.00098	0.08	13.9	3.9	2	23	460	482	459	482	0.94
9	14	0.0025	0.2	12.6	4.6	1	23	487	509	487	509	0.97
10	14	0.00062	0.051	14.5	2.2	2	23	512	534	511	534	0.94
11	14	5.6e-05	0.0046	17.8	0.1	1	23	539	561	539	561	0.96
12	14	2.8e-05	0.0023	18.7	1.6	1	23	567	590	567	590	0.97
13	14	2.1e-06	0.00018	22.3	1.1	1	23	596	618	596	618	0.97
14	14	4.7e-05	0.0039	18.0	0.3	3	20	626	643	625	645	0.92

Sequence Information

Coding Sequence: atggAAATTTGTCGCGGCTGCATGAGCAGCACATTGAGCTTTGTGGATATATTCTCAGAACCACCATTGCCCGATTATCAATGCAGCCTTGCTGAAATGATAAGCTCGCTCGTCGATTTCAAATTGGACCCGGAGGATAATTTGCCGCGCAAACTGTGTGATTCGTGCTATTTAAGTgttcaaaatgcatttaaattcaaattcatgcTCCAGGAGAACCACCAGCTGCTTATCAGGCAGGCAATCAAGAGGGAAAGCGTTTCATTGGAAGCAGACGAAGAGATGGACCAGTCTGACACCATTACGTGGGTACACATGCAGAAGCAGCCATCCGCAACAAATGAGTCTGATGAATCGGGTGTCTCTCAGTCCACTATTAAACGCGAAGTTGACGTCAACACAAGCAGCTGCATTACAGAGAGTGATTTAGTTTGCCAGCTAGAGCTGAGCAGGTCGATGATAGTAGAAAACGCTTTGGATTCAGACTTGGCTGAGGAGGAGAAGCAAGAGAAGCGTCGTCGGACAGTTGTCGTGGAATCGTCTCCTACGATGGCGTCCGACGCACGCTTAGTTCATCCCTTCATCGAATATGGTTCCATTGTCAGTTCCAACAATATATCTGGAGTTGAGGAGAACTCTGGATGCGACGAGAATTTGGATGGCGACGAGAATTTGAATGATGATGTGAAGTCTGCAAGCGATGAGGAGTCCGAATACTCTGACGACTCTGAGGAGAGTTCTGATAGCGCGGAATCCGACATAAGCAGGTACAGTCCCCGTAGTGGCAAGCCGAGGCCATACAAATGCGATCAGTGCAATGCAGCATttgtacttgccaaatctCTACAAAATCACAAGCTCACTCATGAAGGCCCACCACAAGAGCTCAAGTGTTACGAATGCGACATATCCTTTAAAAAGCGCTTACATTACAATAAACACATACGTAGCTTGCATCCTGTTAAGCGGACATACAAGTGCGAGCAGTGCCAGATAGCATATAAAAATCCCATATCTCTACGAAAACACAAACGCACCCACGAAGATCCAACAGAAGAGTTCAAGTGTTACCAATGCGATATGATCTTTACAGTGGGCGTACTTCTCGAAAAACACTTTTGTAGCGAGCATCCTGATCAGCGGCCATACAAGTGTTCCGAGTGCCCATCGACGTTTCTAAAAAGTGCGCATCTCAAGAATCACTTCGTCAAGCACATCATCGAGTGTTCGAAGTGCAACATGTCTTTTGAGCAGCGCACACATCTCAAGGAACATATTCTTAGCATGCACCCTGAACTGACATACAAGTGTTCCGAGTGCCCAATGGCCTTTCTACAAAGTTCGAATCTCAAGAATCACCTCGCCACGCACATTATCAAGTGTTCACAGTGCGAGATGTCTTTTAAGCAGCGCAAACATCTAAAAGATCATTTTCTAAGCACGCATCCTGAACTAACACACAAGTGTTCCCAATGCCCAATGTCCTTTCAAAAAAGGGAGCATCTCAAGATGCACTTGGTTTCGCACATCATCAAGTGTTCGGAATGCGAGATGTCTTTTGAGCAGCGCAAACATCTCAAAGAACATTTTCTAAGCATGCATCCTGAATTGACACACAATTGTCCCGAGTGCGCAATGGTGTTTGTAAGCAGCGTTAATCTCAAGTCTCACATTATCATACACAACACGGAAGTTGCCTTCAATTGTTCGATGTGCGAAAggacttttaaaaataaaacacgtcTTAAGGTTCATATTAGCACAGCTCACACTTTGGAGCTCCCATTCAAGTGTTCCCAGTGCCCCAAGGAATTTGCAAACAGCTCAAATCTTCTGAAGCACACATTTATCCACAGCAAAGAACGTCCCGTCGCTTGTCCCCATTGCGAGAAGTCCTTTAAACAGAGTTCAGGCCTTAAGCTACATggtataacaaacaTATTAGCTAAGTACAGTGTCACCTGCATGGATGTGTCCCTGTCCGAGGAGGAGGGGCTGCCCAGCGAGCTGTGCCAGAAGTGTCATGAGTAG
Protein Sequence: MEICRGCMSSTLSFVDIFSEPPLPDYQCSLAEMISSLVDFKLDPEDNLPRKLCDSCYLSVQNAFKFKFMLQENHQLLIRQAIKRESVSLEADEEMDQSDTITWVHMQKQPSATNESDESGVSQSTIKREVDVNTSSCITESDLVCQLELSRSMIVENALDSDLAEEEKQEKRRRTVVVESSPTMASDARLVHPFIEYGSIVSSNNISGVEENSGCDENLDGDENLNDDVKSASDEESEYSDDSEESSDSAESDISRYSPRSGKPRPYKCDQCNAAFVLAKSLQNHKLTHEGPPQELKCYECDISFKKRLHYNKHIRSLHPVKRTYKCEQCQIAYKNPISLRKHKRTHEDPTEEFKCYQCDMIFTVGVLLEKHFCSEHPDQRPYKCSECPSTFLKSAHLKNHFVKHIIECSKCNMSFEQRTHLKEHILSMHPELTYKCSECPMAFLQSSNLKNHLATHIIKCSQCEMSFKQRKHLKDHFLSTHPELTHKCSQCPMSFQKREHLKMHLVSHIIKCSECEMSFEQRKHLKEHFLSMHPELTHNCPECAMVFVSSVNLKSHIIIHNTEVAFNCSMCERTFKNKTRLKVHISTAHTLELPFKCSQCPKEFANSSNLLKHTFIHSKERPVACPHCEKSFKQSSGLKLHGITNILAKYSVTCMDVSLSEEEGLPSELCQKCHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -