Basic Information

Insect: Hirtodrosophila confusa
Gene Symbol: -
Assembly: GCA_035043065.1
Location: JAWNNI010000213.1:1850039-1853257[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00011 0.0088 16.9 2.3 1 23 329 351 329 351 0.97

2 19 0.003 0.24 12.4 0.7 1 23 544 566 544 566 0.97

3 19 8.2e-06 0.00067 20.4 1.2 1 23 572 594 572 594 0.98

4 19 0.23 19 6.4 0.3 1 23 604 626 604 626 0.92

5 19 4.1e-05 0.0034 18.2 3.1 1 23 632 654 632 654 0.98

6 19 0.0009 0.074 14.0 2.7 1 23 660 682 660 682 0.98

7 19 0.25 21 6.3 0.9 1 23 689 711 689 711 0.96

8 19 1.4e-05 0.0011 19.7 4.7 1 23 717 739 717 739 0.98

9 19 0.00023 0.019 15.8 1.1 1 23 745 767 745 767 0.97

10 19 0.019 1.6 9.8 0.3 1 23 774 797 774 797 0.93

11 19 1.6e-05 0.0013 19.5 3.9 1 23 804 826 804 826 0.98

12 19 0.00061 0.05 14.5 4.3 1 23 832 854 832 854 0.98

13 19 0.00017 0.014 16.3 0.4 2 23 862 883 862 883 0.97

14 19 5.8e-05 0.0047 17.8 2.1 1 23 889 911 889 911 0.97

15 19 0.067 5.5 8.1 5.4 1 23 917 939 917 939 0.98

16 19 2.9e-06 0.00024 21.8 2.6 1 23 949 971 949 971 0.98

17 19 0.013 1 10.4 1.4 1 23 977 999 977 999 0.96

18 19 1.7e-06 0.00014 22.6 5.4 1 23 1005 1027 1005 1027 0.99

19 19 1.5e-05 0.0012 19.6 2.2 2 23 1038 1059 1037 1059 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00011	0.0088	16.9	2.3	1	23	329	351	329	351	0.97
2	19	0.003	0.24	12.4	0.7	1	23	544	566	544	566	0.97
3	19	8.2e-06	0.00067	20.4	1.2	1	23	572	594	572	594	0.98
4	19	0.23	19	6.4	0.3	1	23	604	626	604	626	0.92
5	19	4.1e-05	0.0034	18.2	3.1	1	23	632	654	632	654	0.98
6	19	0.0009	0.074	14.0	2.7	1	23	660	682	660	682	0.98
7	19	0.25	21	6.3	0.9	1	23	689	711	689	711	0.96
8	19	1.4e-05	0.0011	19.7	4.7	1	23	717	739	717	739	0.98
9	19	0.00023	0.019	15.8	1.1	1	23	745	767	745	767	0.97
10	19	0.019	1.6	9.8	0.3	1	23	774	797	774	797	0.93
11	19	1.6e-05	0.0013	19.5	3.9	1	23	804	826	804	826	0.98
12	19	0.00061	0.05	14.5	4.3	1	23	832	854	832	854	0.98
13	19	0.00017	0.014	16.3	0.4	2	23	862	883	862	883	0.97
14	19	5.8e-05	0.0047	17.8	2.1	1	23	889	911	889	911	0.97
15	19	0.067	5.5	8.1	5.4	1	23	917	939	917	939	0.98
16	19	2.9e-06	0.00024	21.8	2.6	1	23	949	971	949	971	0.98
17	19	0.013	1	10.4	1.4	1	23	977	999	977	999	0.96
18	19	1.7e-06	0.00014	22.6	5.4	1	23	1005	1027	1005	1027	0.99
19	19	1.5e-05	0.0012	19.6	2.2	2	23	1038	1059	1037	1059	0.96

Sequence Information

Coding Sequence: atggAAATTTGCCGCGTTTGCCTGAGCGGCTCACCGGGCTTAGCTGATATGTTCACCGAACGCCCATTGCCCGAATATCAATGCAGCCTCGCTGACATGGTAAACGAATTTGTCGACTTCATCGTAAAACCAGATGAGAAGCTCACGCAAAAGATGTGCGTAATGTGTAGTTTGAATCTGCAAATAGCATACAGATTCAAACTCAGCTTCGAGAAGAACTACCAGTTGCTAAGCGAGAAACCAATCAAAATCGAATGCGACAACGTTGCACAGAACGTGCAACAGAATCCATCATCTACGACAAAATGCCCTGAGCCGAGCTTACAAACCTGCCagctcagcagcaacatcgaGCGGCGTGGCAGAAGCGCATCGAGGGACCAGATAGAAGTCAGCAGCAAGAAAATGAGAACTGAAGACGATCTCTCTATGGGTATGTTGGAAAGAGACTTGTCCGATAGGATGGGACGAAATGCGAGCACTCTAATCGATCCGTCTCCATCCAATGATTGCAATGAACCTAGCTTGAATAGGGCCACCACTCGGAGATCTCGGCGCTATCCGCTCCGTGAGGCCACACTTAAGAGTTTAGCAGAGTGCAACCCAAAGAGCAGGAGCGCTTCGAGTGAGCATTCCACGGACATCGAAGCAGATATCTTGGAGGCTGCTATAAGCAGCATATTGAACGATGAGGGTGAAAAGGAACCTGAAACAAtcaacagaagcagcagcaggagcgaAACGAGTGGCGCAGATTCCCAGACGGACAGTTTGGCGTTGCAGAACATCCCAGAGAATCCACTTTCACCTAAAGAGGGTTTGCTATTAGAGCTTAATACCAACAGCATCATCAATGGACTTGACAAAAGCTCATCGAATAACATGAAACCGGTCAATGAAGGAGACAAAGAACTCGAAACAATCAACAGCACCAGGAGCGCAACGATTGGCGCAGATTCAAAACGCATTCACAAGAAAAAGGAACACAATTGTGACCAGTGCCAAAAGGCCTTTGGAGACAGTTGGAAACTTCGGAGACACCTCAAATCCCACATTGTCGGTAAAAAAAATCACAGTCAGCAGAAGGAGCGCTCTGCGTTGCAGAACATCCCAGATAATCAGCTTTCACCTAATGACGGGCTGCAATTAGAGCTCAATACCAACAGCATCATCAATGGACTTGACAAAAGCTTATCGAATAGCGAGGTACAGGTCAGCAGCAAGTTGGTAAAAAGAAACGAAATCGACATGAATGTCAATAAGCTGGGAACAGACGTGATTAAGGAGATTgagcaaaaagaaaaccacTCATTGAATTTGCCTGCATCGACTGACTATGTTGAAGAACATGAATCCAGCTCAAAGGAGGGCAGCACTCGCAAATCTCAGCGCTATCCCATCCGTGGGGCCAACCGTAAGAGCTACGCGGAGCCCAACataagaagcagcagcgcatcGAGTGACGAGCATTCCAGGGACATCGAATCTGATTTCTTAGAGAGTgataaaagcagcagcaatagcacATCGAATGATGAGGGTGAAATGGACCCCGAAACAAttagcagaagcagcagcaagagtGCATCGAGTGACGCAGATTCAAAACGCTTTCACAAGAAAAAGGAACACAAGTGTGACCAGTGCCAAATGGCCTTTGGGGACATTTGGAAGCTTCGGAGGCACCTGCAAGCTCACGCTGGATTACGCCCATATAAATGTTCCCAGTGTCCAAAGTCCTTTGCGTCCAATTATTCTCTCCAACTGCACGAATCAAGACACCAAAACAATCCCAATATAGAAAAGCGATACAAGTGTGATCtgtgcccagcagcattcCACTGGAGCAATTCCCTTCGAGGACACATATTTGTCCACACAGGTGAACGTCCATACAAGTGCGAACAGTGCCCAAAGACCTTTACGACGACGCATCGCCTCAAGGATCACATAAACGAGCACACTGGTGAACGCCCATACAAGTGCGACCAATGCCCAAAGTCCTTTATGTTTTCTAATAGTTTTCGGTCGCATAAATCAATACACACCAATAAGGGAAAGCAATACAAGTGTGACCAGTGCCCAGCAGCATACCACTGGAGCAGTAGCCTTAGAGAACACAAATATGTCCATACAGGTGGATGCCCATACAAGTGCGACCAGTGCCCAAGGTCCTTTACGTCCAAAATTCATCTCAAGTATCACATGTACAGGCACACTGGTGAACGTCCATACAAATGTTTACAGTGCCCAAAGTCCTTTATGTCCAATTATAGTCTTCAAGGGCACAAATCAATCCACACCAGTAAGGGAAAGCAATACAAGTGTGACCAGTGCCCAGCAGTATACACCTTGAACAATTCCCTTACTTATCACAAGGTCGTCTCCCACGCTGGTGACCCCACAATCTACAAGTGTGACCAGTGCCCAAAGACCTTTAAGCAGAAGTTTAGTCTCAAAattcacacatacaaacatactgGTGAACGCCCATACAAGTGTGACCAATGCCCAGAGTCCTTTACGCACGGTGCAAGTCTCCGTCATCACAAATATACCCACCTTTCAAAGAAGGAAAAGCCCAGGTGTGACCAGTGCTCAAAGATCTTTGCGAACAGGGCGACTCTACAGCTGCATTTGCAAATCCACAATGGTGAACGCCCACACAAGTGCGACCAGTGCCCAAGGTCCTTTGCGTCGAAGTATCGCCTCAAGGATCACATTAACGAGCATACTGGTGAAAGCCCATATAAGTGTGACCAGTGCCAAAAGACTTTTAAGTGTGGTCAAAGTCTCAAGCAACACAAAATAACCCACACTAGCTTACAGGataggaaaaataaatacaagtgcGACCAGTGCCCAAAGTGCTTTATAACAAAGTATCTTCTCAAGGAGCACATAAACGAGCACACTGGTGAACGCCCACATAAGTGTGACCAGTGCCCAAAGTCTTTTATGGCGATGCGCCGCCTGAAGGATCATATGATCGAGCACACTGGTGAGCGCAAATACAAGTGTGACCAGTGCCCAAAGACTTTTACTCGGTCTCAAAATCTCCATCAACACAAAAGAACCCACATTAGCATTCAGGataggaaaaataaatgcaagtgTTCCCAATGCCCGAAGTCCTTTGTGGACAGTTGGAAACTGCAGAACCATCTCCTTACCCACACTGCTAAAAAGAAACGTGGCAAGCAACAAAAGAAGGTCTAG
Protein Sequence: MEICRVCLSGSPGLADMFTERPLPEYQCSLADMVNEFVDFIVKPDEKLTQKMCVMCSLNLQIAYRFKLSFEKNYQLLSEKPIKIECDNVAQNVQQNPSSTTKCPEPSLQTCQLSSNIERRGRSASRDQIEVSSKKMRTEDDLSMGMLERDLSDRMGRNASTLIDPSPSNDCNEPSLNRATTRRSRRYPLREATLKSLAECNPKSRSASSEHSTDIEADILEAAISSILNDEGEKEPETINRSSSRSETSGADSQTDSLALQNIPENPLSPKEGLLLELNTNSIINGLDKSSSNNMKPVNEGDKELETINSTRSATIGADSKRIHKKKEHNCDQCQKAFGDSWKLRRHLKSHIVGKKNHSQQKERSALQNIPDNQLSPNDGLQLELNTNSIINGLDKSLSNSEVQVSSKLVKRNEIDMNVNKLGTDVIKEIEQKENHSLNLPASTDYVEEHESSSKEGSTRKSQRYPIRGANRKSYAEPNIRSSSASSDEHSRDIESDFLESDKSSSNSTSNDEGEMDPETISRSSSKSASSDADSKRFHKKKEHKCDQCQMAFGDIWKLRRHLQAHAGLRPYKCSQCPKSFASNYSLQLHESRHQNNPNIEKRYKCDLCPAAFHWSNSLRGHIFVHTGERPYKCEQCPKTFTTTHRLKDHINEHTGERPYKCDQCPKSFMFSNSFRSHKSIHTNKGKQYKCDQCPAAYHWSSSLREHKYVHTGGCPYKCDQCPRSFTSKIHLKYHMYRHTGERPYKCLQCPKSFMSNYSLQGHKSIHTSKGKQYKCDQCPAVYTLNNSLTYHKVVSHAGDPTIYKCDQCPKTFKQKFSLKIHTYKHTGERPYKCDQCPESFTHGASLRHHKYTHLSKKEKPRCDQCSKIFANRATLQLHLQIHNGERPHKCDQCPRSFASKYRLKDHINEHTGESPYKCDQCQKTFKCGQSLKQHKITHTSLQDRKNKYKCDQCPKCFITKYLLKEHINEHTGERPHKCDQCPKSFMAMRRLKDHMIEHTGERKYKCDQCPKTFTRSQNLHQHKRTHISIQDRKNKCKCSQCPKSFVDSWKLQNHLLTHTAKKKRGKQQKKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -