Halb011901.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000502.1:673260-677894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0013 0.087 13.4 0.2 1 23 176 199 176 199 0.96 2 14 0.0016 0.11 13.1 2.9 2 23 248 270 244 270 0.89 3 14 0.014 0.98 10.1 0.9 1 23 378 401 378 401 0.93 4 14 3.3 2.3e+02 2.7 5.3 2 23 450 472 449 473 0.95 5 14 0.0037 0.26 12.0 0.5 1 23 549 572 549 572 0.88 6 14 2.3 1.6e+02 3.2 0.1 2 14 591 603 590 615 0.85 7 14 0.00079 0.055 14.1 3.3 2 23 623 645 623 645 0.96 8 14 0.0014 0.097 13.3 0.1 1 23 738 761 738 761 0.95 9 14 0.00019 0.013 16.0 0.2 1 23 813 836 813 836 0.93 10 14 0.0013 0.092 13.4 2.2 2 23 886 908 885 908 0.97 11 14 0.0021 0.15 12.7 2.0 1 23 997 1020 997 1020 0.92 12 14 0.041 2.8 8.7 2.2 1 21 1072 1092 1072 1093 0.95 13 14 0.57 39 5.1 0.1 2 23 1149 1173 1148 1173 0.77 14 14 5.2 3.6e+02 2.1 0.2 1 8 1191 1198 1191 1215 0.81
Sequence Information
- Coding Sequence
- ATGGAAGGTATGGACTTATGGACGTCCATGTTTTCGGCTGACTTTGAGGAGGAGAATGACGGCGAGTTAGAGTGCCACAGAGATCtaaataattgcaacaattttcacCCAGACGAGTTTATGGCCGAGGAAGAAGAAGATGAGCAGGAGGCGGATATGGACGAggctgatgatgatggtgataGGGAGGGGGATGGTGAGGGGAATTTCGACAAGAGacgcaaaaaacaaaaaggaccCGAACCCGATGACGATgccatatttgattttgaactAGAGCCCATTGTTAGCATTGCTGAAGCAAAATCTGGGACGACCAGAGCAACTGCCCCATTGGCGCCACCAATGCCAAGTGTACCTGCAACTGTACGCCCCACACAGCGTCAATCTTTGCCATCATCCTTTGGATCATCACTGCAGGGTCGCGTTGCTGGGTCAGCAGGTGTAGGAGCTCGACCAACCACTTCCCAGATCAATGCCACCGATGAAAATGGTGTACCCATTAATTATGAATTgggagttatatatatatgtccaGCATGCGGCTCCGAATATCGGCAACAGGACATGTGGAAGCGTCACATGAACCAAATGCATCAGTATAATACACGACGAGGACTCAATTTTGTGGCCATTGATAAGCTATATCATCGTTGTCTAGAGTGCAACAAGCGCATCGCCATGCACAGTCGCGAAAATCTgctaaaacacaaatttaccCATTTGCCATATCGTTGCACCAAGTGCTACATATGCAAGCGTGAGTACAAATACAGGCAGGACCTGATGGTGCATTTGCGCATGGTTCACTGTGACGAAGTGGTGGCCATGATGCGTGCCGGAGATTCCAGTGCCGGCCGCAAGACACGCGTCCGTGAACCGCGCATCGAACAACAACATCACAGTCACTACGCTCGTCTAGTGAATGACAAAGACGATGCCAAGAATGACTTAATACCACAGGAAGTTGAGGCTATTGATGAGTCCAACTGTGGCTTGGATGATAAACAAAATCAGAGCTCAATTCAAGCAGGAACTGGCAAAAAGAAGCGCATCAACAATCCTACAGCCGAAGGCAATGATAATGGTGATGCTGGTAATTCGACAGACATTTGCGAGGATTATATACACTACATGTGCCCGGATTGTGGCACTGACTGTGACACCCACGCCCAGTGGAGTCAGCATATTGAGTTTGTTCACGATTATGTCAGCCGGCGTGGTCTTAACTTTCGTTGTGTGGACATGCAGATGCAGTGCCTCGAGTGCATGAagTTTGTGATCCCTAATACGATCAAGACGCTGCGTGCACATAAGTTCAGTCATTTGGCACAGCCAGAATGGATGCGCTGCAAGTTGTGCTACATGGGCTATACGGAGCATCATGAGCTGGTTACTCATCTGCTCAAGAAACATCATCTAGAGTCTTTGATGCCTGATTTCGAAGAGGAGCCAACAGCAGTTAACGATGATGTTGATGAGAACACCATTGGCAATAATACTGACAATGCCGACAATGCCGACAATGGGGAAGGCGATGGCGATGGTGGATTCGATGATGATGAATCAATGTTACATTTGGATGATACCCCACGTCGTGGTGGTCGTATTAGCAGTGATGATATGTATGAACCCCACATTGACTATTTGTGTCCGCAGTGTGGCAGAGAGTTCATCGAGAAAAAACATTGGCGAACTCATGTTGTCCAAGTGCATGGCATGAACGATCTGGCCCAGCTGAACTTTGAGGTGATCAACGATCGTCAGTTGAAATGCACGGAGTGCGATAAGATTATAACGAATGCTTATGGCATACAGAATGCCCAACAGCATCGGATTACACATTTGCCATACAAGGCTTATGCACGCTGCCGAAAATGCCACAAATCATACACGGATCGCAAGGGTTTGGTTAAGCATTTGGCCACCTATCATCGTGTGGGCTACGAGCCGCGTAAATTTAGTGCTGGAGGCAAGACGCAACCGTCGTCGCAACGCAAACAAATTGTGACAGTGGCAAATGAAACGTAtgagattatttatttagatgagGAGCAATCACCGCCTTCTAgccataacaataacaacgaaGAGAATGATTTTGGAGAGCTAATGCAAGcggataatgatgatgattatgccATAACCAGCGCTGTCAACAGCAGTCGCCAATTGCCAGCCGCATCCAATGATACACCCAATCCAAATCGTTTTAAATGTGTAGACTGTGGGTCCTTGTTCCCTACACAGGCGGCGCTAAAGACGCATATTAGCGAGGAACATGATTTTATTGACGCGGAACCGACTGATGATGTTGAATCAGTTCCATTGGTAGCTGCCAGAGCAACATCGTCGCCGCCAGTGGCGAGCAGTAGCAGCAAGAAAGCgacattaattaataactgtGGCGCTTCCACCATTGAacagaattatatatttttgtgcccATCGTGCGGCGAGTCGTACAAGACGCAATTTGAGTGGCGTCGACATATCAATGAGGCGCACAATTTTGATAAGCgacaatatttgaatatgcGTCAGTTGGACAAGTATCGTTATCAGTGTACACAGTGCAAGGATATTGTGTGCAACTCAAAGCTAAAGGGACTGCAGGATCATCACTTTCGTCATTTGCCGTATCGACTGTATTTGAAGTGTTTGGTCTGCGGCACTTGCTACAATCACAAACCCAATATTGCTGCACATTTGCGCACGCGTCACAATATCTATGAGCGTGAGACATCGTGGCGTGAGGTGCAGCCAAAGCCACAGTATGGTTATATGTCGAATAAGGACAAGGATAAGGAAATGCGTGCAGTGTCTTCCTCATCGCCGTCATCGCCCACGCAGCATGCCACTAGCAGCGCTGCATTGGGACGTTCATTGAAACCGCAGCCAGGCGTATTACCCAATCGACCCGCTGGATTAAATACATTAGAGGATAGTATTTCGTATCATAATGCTGTGGATCTTGACTTTATCACATACTATTGTCCCAAGTGCAACAAGAACTTTGATTCGCACGCCTTTTGGCGCAAGCACATCGTGGAAcagcacaattttaattgtcgACAGGGTCTTAATTTTCGTCAGATCGACAACCATCACTATTTGTGCCTGGAGTGCTATAAGCGTGTAACTGTTACACACACCAAGGGCGCCATCGGTCAGCTGCAGTCGCACAAGTTCCGGCATTTACCGTATCGCTCCTTCAAGTGTTTGACTTGCAACAATGAGTTTGTGCGAAAGCAAATGTTCTTCAAGCATTTGAATCGCGACACAAATCGCTGTGACAACAAGCCGCTAAGCGTACACGATAATGACGATGAAGTTGTGGAGCAGCAGCCAGAGAATATCGGTACTGCAGCCGGTGGCAGCGTTCAAAGTGCACCTGCAGTGGCAACTGTCGAAGAAGAAGTTGATCCCGCAGCGTATCGCCTAATGTGTCCGCAATGTGGCGACAACTTTACCACTAGCAGCAAAGCGCTGTGGCGGGAgcatattaacatttatcaTGGCCTCGGGAAGCGTGAACTCCTGCATATGCGCAAAGTGGGCGATGATCTATATCGCTGCACAGACTGTGACGAGCAGTTGCTGACAAAGAAGCTGCGTGTGTTGCAGCAGCATCGTTTCAGGCATTTACCCTATGCTGCCTACATACGCTGTCAGCTGTGCGAAAATCAGCCGGATGAGCTGGGTCAtggtgctgctgcagctggtCTGCACAGTATGCGCGAACTGCAGCAACACATATGCGACCAACATCCTGATGTGGCCGAGAATGGTCAGcaattgcaactgctgctggaTGATGAGGATAGTCAGCCAGCTAGCAATGAGACCGGAAATAGTAGATATATGCCATTGCCGCCGCACTTAATGGGCGACGATGTGGAGGATGTGGAATTTGAGGAACAGTATCTGCTGGGCTAA
- Protein Sequence
- MEGMDLWTSMFSADFEEENDGELECHRDLNNCNNFHPDEFMAEEEEDEQEADMDEADDDGDREGDGEGNFDKRRKKQKGPEPDDDAIFDFELEPIVSIAEAKSGTTRATAPLAPPMPSVPATVRPTQRQSLPSSFGSSLQGRVAGSAGVGARPTTSQINATDENGVPINYELGVIYICPACGSEYRQQDMWKRHMNQMHQYNTRRGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVVAMMRAGDSSAGRKTRVREPRIEQQHHSHYARLVNDKDDAKNDLIPQEVEAIDESNCGLDDKQNQSSIQAGTGKKKRINNPTAEGNDNGDAGNSTDICEDYIHYMCPDCGTDCDTHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECMKFVIPNTIKTLRAHKFSHLAQPEWMRCKLCYMGYTEHHELVTHLLKKHHLESLMPDFEEEPTAVNDDVDENTIGNNTDNADNADNGEGDGDGGFDDDESMLHLDDTPRRGGRISSDDMYEPHIDYLCPQCGREFIEKKHWRTHVVQVHGMNDLAQLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPYKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKFSAGGKTQPSSQRKQIVTVANETYEIIYLDEEQSPPSSHNNNNEENDFGELMQADNDDDYAITSAVNSSRQLPAASNDTPNPNRFKCVDCGSLFPTQAALKTHISEEHDFIDAEPTDDVESVPLVAARATSSPPVASSSSKKATLINNCGASTIEQNYIFLCPSCGESYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIYERETSWREVQPKPQYGYMSNKDKDKEMRAVSSSSPSSPTQHATSSAALGRSLKPQPGVLPNRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEQHNFNCRQGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNNEFVRKQMFFKHLNRDTNRCDNKPLSVHDNDDEVVEQQPENIGTAAGGSVQSAPAVATVEEEVDPAAYRLMCPQCGDNFTTSSKALWREHINIYHGLGKRELLHMRKVGDDLYRCTDCDEQLLTKKLRVLQQHRFRHLPYAAYIRCQLCENQPDELGHGAAAAGLHSMRELQQHICDQHPDVAENGQQLQLLLDDEDSQPASNETGNSRYMPLPPHLMGDDVEDVEFEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -