Halb015578.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000771.1:69207-74349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0036 0.25 12.0 0.3 1 23 146 168 146 168 0.98 2 14 0.00014 0.0093 16.5 1.9 1 23 396 418 396 418 0.98 3 14 0.42 29 5.5 0.4 1 23 424 447 424 447 0.94 4 14 0.74 51 4.7 0.2 1 20 476 495 476 499 0.90 5 14 0.0014 0.094 13.3 1.9 3 23 774 794 773 794 0.92 6 14 0.055 3.8 8.3 1.4 1 23 800 823 800 823 0.98 7 14 1.3 90 4.0 1.6 2 23 860 881 859 882 0.90 8 14 0.0048 0.33 11.6 0.8 1 23 903 926 903 926 0.97 9 14 0.018 1.2 9.8 0.4 1 23 1194 1217 1194 1217 0.91 10 14 0.0028 0.19 12.4 4.0 1 23 1230 1252 1230 1252 0.98 11 14 6.8e-05 0.0047 17.4 0.6 3 23 1259 1280 1257 1280 0.95 12 14 0.0011 0.079 13.6 4.5 2 23 1287 1311 1286 1311 0.90 13 14 0.057 4 8.2 0.3 1 23 1316 1338 1316 1338 0.96 14 14 0.0099 0.69 10.6 1.2 1 23 1344 1367 1344 1367 0.96
Sequence Information
- Coding Sequence
- ATGGCGCTCAAACGCATGAAAACGGAGGATTTGGAAATCAATTACAAATTTGCGTGTCGCTGTTGTCTGAAATCCGAGGCAGAATTTTTCAAGCTGGACTCACTAACAGAGAGTGTTATTGGCGACAGTGACGCGACCAGCACAAAAATACCCCTCATAcgtttactattattttgcatGCGCACTGAAAATCTACCCGAATTGCCGCAATATATTTGTATCGACTGCAGCAAGAGCCTTcaaattgcatacttttttatacaaaacgGCCTGCGTGCACACGAAATATTGTGTCGCAAGCTATGCCCGGGAAAGCTAAAGACCACGATGCGTTTGAACGGTCAACAGCAGACACATCACACCGAGCCAAGCGACCAAGATGGGGACCAAGCAACACTTGAACCTCAAGCGAAGCTCCGCAAAACTGCCGTACGTCATGAGTGCAAAGTATGCGGCGCCATCATCTACGATCGCCTGGAGCTTAAACAGCATATTCGCATGCACACAGAAGCGTCGAGGCATAAGTGCAAATTGTGTAACTTTATAACACTCAAGCATCGTCAGCTGCCTGAACATTATCGCAAAGCACATGGTTTAACTGCGTCCCAAATTGAACAGCAGCTTAAAATAAGAAGATCTATGGAGGCGACTGCAGCTGCCATTAATGCgtcaacatcagcagcaactgAAGATGATGGACAGGTAAAGGTGTGCACACTGGAAGACATGGAGCTGTTAATACCTACAGTGCTCACACCGGAGGATTTTTCGCATCCAAAGCTAGATGCTGAACAATTACGTTCTATTGAAGAACAATTGACAAACTCAATATCTGTTAAAAGCATCGGATCAAGAGAGGATTCCAATATACTACCAACTGAATCGACGATAGCTGCAGGGGCCAACGGAAATATGAGCATAGGTGCTGAGTTTTTGGTCATGCCCGATGGCACACTACAACAAGTAAATGATGCCGGAGTTGTTTTCGAATACATTGATGATTGCAAAAGCGCCAATACGACGACAAATATGAGTTTACAAAATCTCTTTGCTGATTCAAAATCGGACATATCTTATGATGCGATGGATATTGAAACTAACGCAAATGCTGTCCAGAATGCGCTGCCACAGATAACAGTAAAGCCAAAGGCCATGCCAGCACCAGCGTCAACTGCCGCCTTGAAACACAGATGCAAACTGTGCCCCAAATCATTTCCTACGGTCGCACGTCTGAAATCTCATCAGTTAACTCACAGTCatttgcCCAAATTCTTTTGCGATCAATGTGGCTATTACTCGCTGCGTAGCGCCGATCTCATTCAGCACTATACAACAGTACACAAGTCCATTTTGGGCgatagtaaaataaatctgCTTGAAAGGCCGCCACCGTCACTATCGATGTCCGTGGAGAAAAGTCGAACATTTTCCTGCGACATGTGTCTATTCGAGGCAACAAGTAGCGGTCAGCTGCGTGCACATTACGGCGATAGACATATGATGCAGCCGAATGAGATACAGTTACGTCCCAGCTGGAACAATGAGGTGCTGGATAAAGCCGTCAGCTCAGTACGCACCAGTGGCGATGCTAAAAATGATGATGCATTGGGTGTTAAATATCTAAACACAACGTCTGCAGGTGCCGTTATTGAAACAACACCGATTACAATGGAGCAGCAAATTCAACcgcaggcaacaacaaccgcTGTGGTAACGCCAACTGGTGAAATAAATGTGGTCGTGGATGCCACCTCATTATTCTATGCAGTGGGTACATCaaaagaagcaacaacaacagaaaccaCAGCAGCATCAttaccaacagcaacagattCGAACACATTTGGAATATATCCAGATCAATCTTTTACTAAAAActtaccaacaacaacaacatcgacaATTACGCCGGAGTCGAGCGGAGTATTGCCCGCTGCTTGTGTTGCTCCATCAGCGGTTCCAACAGTGAATGCAAACAATAGTATATTTGGTGATATGCAGGAATTTATTGATAACACTGATGTTGCTGCCATATGCACCATACCGGCGGACGATATGCCCGTGGTCGATGGCGATGATATTGttatagataataataatatgagccTAGATTTCGATGCCGAAAATCTGTTCGAAGATTTTGAAGAGGACGTCGAAGTGGGCGAagatgatgaggatgaggatgaggacgacgctgataatgatgatgagaatgataataatgatgcgGCTGCCgatcaaaatttattgctcACCAGCGATGATGACGATGTGGACGACTTTGATGACGAACAATCAAAGCATTTACAAAAACCATATTGCAtctattgtaataaaaagttTACCAGCCAGTACAAATTCGAGAATCACATGTTTGTGCATCGCGGATTGGCGCCTTATCGCTGCGAACTCTGTACTAACTTGTACAATATGAAACGCCTGCTCATAAGACACTACAAGACAGTGCACAAGCGCATGCCCTCAAGGGACATGGTACAGGCCAAGGGCGACAAGGTATCCGTGCAGCGTACAACTATCGAAAAGATAACattaaatgttgataaaaCTCCTATTCTGATGTGTGCTAAATGTCCCTTTGAATGCGAACAGGATGGCGATATGCGTAAGCATTTGAATGCGCATCATGGCATCAACGAAGGCGTATCTGTGCATGCCAACGAGGTGTTCATCATTCGCAAACTGCCTTTCGAGTGTCCACGCTGCATTCGGTCGTTTGCGGCTAAGCGCACGCTGACACGCCATCTGCAAAGAAGCCATTTAGTGGACACTATTATTGAGATGCAGGCGCCTCAATTGACAACTAGTTCAGCAGTCACGACAACCACATCGACGGCTACAACCACACTACCGAAGAATGCCAGCGGTGTCGATGGCACTGATGATATCAGCAATACAACAATTACATCACTGCAGGAGTCCAACATGATGGGAAACACAGAGCAACAcaacgctgacgctgacgctgatgTTGACACTGGctatggcgatggcgatgaaAAATGCGCGGAAATACCAATAGACGAGGGCACAGATGTTAAAACGGATAGTGAAGATATTGATATGAAAACAACACTGCAAGTAACAGAAAAAGCAACATCAACCGAATTGTTAAAGGATGATACAACTGAAACAGCAACTGAAACCACAGCTGCAACTGAAACATCATCAGCAGAAACCACGCCCGCAACTACTACAACAACGGCAGAAGCCATAactgcaactacaacaacaacggcagaAGTCACAGTTACAACTGCATTAAAAACGACAATGACAACTGCGACAACAACGGCAGCAATACCATTTCCATTAACAACATCTGCAgtatcagcagcaacatcagccaTGCTTTttccaacgccaacgccattTGATTTTGATCTTGATTTTATCGGCAATGGAACAGCACATGGCATGCCCATTAAGAGCAACAATGATAGTTTTAACATAACACGCAGTTCACGTCATCTATTAAACGGTAGCGATAAGCTATTGACAGCAGCGTTGGAGCCATCACCAATTAAGGACTTACGTTCACGTTTGCCGAGGACTCCGATTTTTGTTTGCAAGCAGTGCAACCAGACCTTTGATGAGCTGGGCAAGCTCTTGCAACACGAACTGGAACAACATTCCAGTGACACGGTATCGCCTCGCAGCAGTTACCAGCATCGATGCAAGATTTGTAATACCACATATCGAACAGTAACGTTGCTTGATTATCACATGAAACGTCATGTGGCGCGTAAAATCGATTGCAAACAATGTCCCAAACAGTTTACCCACAGCTCAGCTTTGGAGGAGCACGTTCAGTCGGAACATCGCGCTCGAATGCCACTAAAGTGTGGCATGGATGGTTGCAAGAAGACTTTCAATTACAAGCATCATCTTAAACGCCATCAGACTGCCTCGCATATGCCTGTACAGTACATATGTCCGGAGTGCGGGCGCGATATGCTGACTAGTCTGCATTTGAGAAATCACATGGCAAGCCATAAGGGCACACATTCTTACAGGTGCCCCAAGTGCGTTCGCACCTATATGAGACGCAATCCTTTTCGAAGACATGCGCTGCGTGAGCACAAATGGGAGCTGACTGAAGACGAAAtggataaaatatattgcttaaatgAGACTTTGAGCACCATCAATCGACCTGGACCCCTTGTTAAAAGCGGGCGCAAACCTAAGAAGGTTATGACTGAACAGTCACAGTAA
- Protein Sequence
- MALKRMKTEDLEINYKFACRCCLKSEAEFFKLDSLTESVIGDSDATSTKIPLIRLLLFCMRTENLPELPQYICIDCSKSLQIAYFFIQNGLRAHEILCRKLCPGKLKTTMRLNGQQQTHHTEPSDQDGDQATLEPQAKLRKTAVRHECKVCGAIIYDRLELKQHIRMHTEASRHKCKLCNFITLKHRQLPEHYRKAHGLTASQIEQQLKIRRSMEATAAAINASTSAATEDDGQVKVCTLEDMELLIPTVLTPEDFSHPKLDAEQLRSIEEQLTNSISVKSIGSREDSNILPTESTIAAGANGNMSIGAEFLVMPDGTLQQVNDAGVVFEYIDDCKSANTTTNMSLQNLFADSKSDISYDAMDIETNANAVQNALPQITVKPKAMPAPASTAALKHRCKLCPKSFPTVARLKSHQLTHSHLPKFFCDQCGYYSLRSADLIQHYTTVHKSILGDSKINLLERPPPSLSMSVEKSRTFSCDMCLFEATSSGQLRAHYGDRHMMQPNEIQLRPSWNNEVLDKAVSSVRTSGDAKNDDALGVKYLNTTSAGAVIETTPITMEQQIQPQATTTAVVTPTGEINVVVDATSLFYAVGTSKEATTTETTAASLPTATDSNTFGIYPDQSFTKNLPTTTTSTITPESSGVLPAACVAPSAVPTVNANNSIFGDMQEFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNMSLDFDAENLFEDFEEDVEVGEDDEDEDEDDADNDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPSRDMVQAKGDKVSVQRTTIEKITLNVDKTPILMCAKCPFECEQDGDMRKHLNAHHGINEGVSVHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQAPQLTTSSAVTTTTSTATTTLPKNASGVDGTDDISNTTITSLQESNMMGNTEQHNADADADVDTGYGDGDEKCAEIPIDEGTDVKTDSEDIDMKTTLQVTEKATSTELLKDDTTETATETTAATETSSAETTPATTTTTAEAITATTTTTAEVTVTTALKTTMTTATTTAAIPFPLTTSAVSAATSAMLFPTPTPFDFDLDFIGNGTAHGMPIKSNNDSFNITRSSRHLLNGSDKLLTAALEPSPIKDLRSRLPRTPIFVCKQCNQTFDELGKLLQHELEQHSSDTVSPRSSYQHRCKICNTTYRTVTLLDYHMKRHVARKIDCKQCPKQFTHSSALEEHVQSEHRARMPLKCGMDGCKKTFNYKHHLKRHQTASHMPVQYICPECGRDMLTSLHLRNHMASHKGTHSYRCPKCVRTYMRRNPFRRHALREHKWELTEDEMDKIYCLNETLSTINRPGPLVKSGRKPKKVMTEQSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -