Basic Information

Insect: Hirtodrosophila alboralis
Gene Symbol: -
Assembly: GCA_035043045.1
Location: JAWNNH010000195.1:1766522-1768433[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 9.1 7.1 0.1 2 23 234 256 233 256 0.95

2 10 4.3 3e+02 2.3 0.9 6 23 265 282 265 282 0.94

3 10 0.0004 0.028 15.0 4.0 1 23 288 310 288 310 0.99

4 10 0.066 4.5 8.0 2.5 1 23 319 341 319 341 0.85

5 10 0.00048 0.033 14.8 0.4 3 23 351 372 350 372 0.96

6 10 0.00027 0.019 15.6 0.1 3 23 380 400 379 400 0.96

7 10 0.00086 0.06 14.0 1.3 2 23 409 431 408 431 0.97

8 10 4.1 2.8e+02 2.4 2.3 2 23 440 462 439 462 0.88

9 10 1.9e-07 1.3e-05 25.4 1.5 1 23 468 490 468 490 0.98

10 10 5e-06 0.00035 21.0 4.1 1 23 496 519 496 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	9.1	7.1	0.1	2	23	234	256	233	256	0.95
2	10	4.3	3e+02	2.3	0.9	6	23	265	282	265	282	0.94
3	10	0.0004	0.028	15.0	4.0	1	23	288	310	288	310	0.99
4	10	0.066	4.5	8.0	2.5	1	23	319	341	319	341	0.85
5	10	0.00048	0.033	14.8	0.4	3	23	351	372	350	372	0.96
6	10	0.00027	0.019	15.6	0.1	3	23	380	400	379	400	0.96
7	10	0.00086	0.06	14.0	1.3	2	23	409	431	408	431	0.97
8	10	4.1	2.8e+02	2.4	2.3	2	23	440	462	439	462	0.88
9	10	1.9e-07	1.3e-05	25.4	1.5	1	23	468	490	468	490	0.98
10	10	5e-06	0.00035	21.0	4.1	1	23	496	519	496	519	0.98

Sequence Information

Coding Sequence: atgtgttttttgtgcATGCAATGCACAGATGACGCCCTggacaatattaaatttggttcCAGAGAAGCGACAATACTTGACATGAATGTCATCATAGAAAAGCACTTTTGGTTTCAGaCTAAACATGCCAGTGGTCACGTTTGTGGTGTTTGCTGGAACCAATTGTTTGCATTCCACAATTTCTATACTAGTGTAGAGCAGGCGCACAAAATACTTCTAGCCGAAACGAGCGCCGTTGTGGAGGAAAATACAATTGCCATGGAGCCGGATGTGGGTGTGGTGAAGAAGGAGAGCTTGCTAGATGAAAGCGTCGCGGCTTCAGTTAAACGTAGACGTGGACGTCCACGCAAACAGTTTCCAGGCGACGAAGCAACAGGTATTGACAGCAACGAGTTTAAAACCGTGCTAGAGCAGATCAAtctaaatgaaatcaaaatcgAGTTTCCCGATGCGGATTTAAGCATAGCTGATGTGCTGGAGGATCAGGAGGAACAAAATATGTCCGATTATCTACAGCAAAGCGCCGGCGAAAGCGAAGCGGATGAAATTGTCGTCAAACCGAAGACGAAaccgaaaaaaacaaaaaaacgtcACGGGGCTGCCAAGTTAAAAATTGTCAGCAAGATCAAAGGCAGCGGCatacataattttaagaaatcacaagaatttaatgaatacATTAGGGAACATTACAAAATCCAGTGTCCAGTATGCAATATACCCATGGATGATTTCTCTGATATGCTTAAACATACACGCCAAGAGCACAATCAGCGTGGCTATGCCATGTGCTGTAATCGCAAATTCTTAAAGCGTGGCTTCCTCGTTGATCATCTGCGCCGTCATCAGAATCCTGAACTCTTCAAATGTCACATTTGCCATCGCGTCATGGGTCAACGTCGCAGTCTGGAGCTGCATATGCGCATGCATGATATAAAACAAGTCGGGCGCCTCTATAAATGCGATCAATGCCCGAAGAGCTTCTACGCCTCCGTCGTTTGTGAGCGCCACAAGCTAACACACATTCCCAAGGAGCAATGGCATGTGGCCTGCACCAATTGCAGCAAAACCTTCCCCAATGAATATCTTATGCAGCAGCACTTAAAGCTGGTGCATTTGAGAAAGTTCGACAAGATTTGCGATGTGTGCGGTAAGTCAATACGTGGTCGTGAAGGCTTGAAACGGCACATGGAGGAGCATACAGGCGTGCCgcaaaagataattaaatgcCACTTATGCGAATCAACATTGACCACCAAATATGGTCTGGCACGTCACATTAAAATGATGCACACGGCTGAAAATCTGCAACCCATGCAGTGTGACATTTGCCGTAAAATATCACCCAGTCTGCAGGCCCATCAACATCAcattaaatatacacacaatacGGCACGTACGCACCAATGTCCAATGTGCGAGAAGGCCTTTAAGCGTCCCAAAGAATTGCGCGAGCACATGACAACGCATACTGGCGAGGTTCTGTATACCTGCCCGCATTGTCcgaaaacatttaattcaaatgcaaatatgcatGCACATCGCAAGAAAATGCACTTCAAAGAGTGGCAGGAGTATCGTTATCATCATCAGCGTCAACGCAACTCAGATACAATAATTGCCGTTAGTGTACGCAAGACAATGGAAAAAACAGCGACAGAAGCAGAAGCCGGCACCACGTTGGAGGTGACCAGCGATGTATTGATGGAGTGTTGA
Protein Sequence: MCFLCMQCTDDALDNIKFGSREATILDMNVIIEKHFWFQTKHASGHVCGVCWNQLFAFHNFYTSVEQAHKILLAETSAVVEENTIAMEPDVGVVKKESLLDESVAASVKRRRGRPRKQFPGDEATGIDSNEFKTVLEQINLNEIKIEFPDADLSIADVLEDQEEQNMSDYLQQSAGESEADEIVVKPKTKPKKTKKRHGAAKLKIVSKIKGSGIHNFKKSQEFNEYIREHYKIQCPVCNIPMDDFSDMLKHTRQEHNQRGYAMCCNRKFLKRGFLVDHLRRHQNPELFKCHICHRVMGQRRSLELHMRMHDIKQVGRLYKCDQCPKSFYASVVCERHKLTHIPKEQWHVACTNCSKTFPNEYLMQQHLKLVHLRKFDKICDVCGKSIRGREGLKRHMEEHTGVPQKIIKCHLCESTLTTKYGLARHIKMMHTAENLQPMQCDICRKISPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPKELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKMHFKEWQEYRYHHQRQRNSDTIIAVSVRKTMEKTATEAEAGTTLEVTSDVLMEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -