Basic Information

Insect: Hirtodrosophila alboralis
Gene Symbol: -
Assembly: GCA_035043045.1
Location: JAWNNH010000078.1:199475-201452[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00022 0.015 15.8 0.1 1 23 255 278 255 278 0.97

2 8 1.5e-05 0.001 19.5 2.7 2 23 289 310 288 310 0.96

3 8 0.0012 0.082 13.5 1.4 1 23 319 342 319 342 0.94

4 8 0.039 2.7 8.7 0.1 3 23 352 372 350 372 0.96

5 8 0.00037 0.025 15.1 6.5 1 23 378 400 378 400 0.98

6 8 0.00013 0.0087 16.6 0.1 1 23 405 427 405 427 0.98

7 8 2.1e-06 0.00014 22.2 1.7 1 23 433 455 433 455 0.97

8 8 0.024 1.6 9.4 4.7 1 23 461 484 461 484 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00022	0.015	15.8	0.1	1	23	255	278	255	278	0.97
2	8	1.5e-05	0.001	19.5	2.7	2	23	289	310	288	310	0.96
3	8	0.0012	0.082	13.5	1.4	1	23	319	342	319	342	0.94
4	8	0.039	2.7	8.7	0.1	3	23	352	372	350	372	0.96
5	8	0.00037	0.025	15.1	6.5	1	23	378	400	378	400	0.98
6	8	0.00013	0.0087	16.6	0.1	1	23	405	427	405	427	0.98
7	8	2.1e-06	0.00014	22.2	1.7	1	23	433	455	433	455	0.97
8	8	0.024	1.6	9.4	4.7	1	23	461	484	461	484	0.97

Sequence Information

Coding Sequence: ATGGCTGAGTTTACGGAAATTGAAAATGGATCAGATAATAATGAGATTCCAAGTGTCAGCGATTGGCGTTTGTGGTGTCGTCTTTGTGCGAAGGACGATCTGCAAggaaatattaatgtttttctGAAAAACGAGCAGCCTGTGCCTGGCGACCGGGATGGAGATGGAATAACTGCCCCGGTTAGCGACTTGGCGCTGGCCACAGccattggcaaatatttttgggtGAATATAACTCGAGGTGAGGAGCTGCCGGAGATGATATGTAGCGAGTGTCTGACACTAGTCACCTCGCTGGTGAATTTCTCAGAGCGTATAACCCGCGTCCAGAAGCTCTATTGTATATTGCAGAGCACGCCCAAAAAGTCAATCAATATGCAGGAATTGCGCGTCAGATTTGGGCTGCTAGAAGAAGAGCCGGAGACGCTAACCGAAGTGCATTATGTGGAGGAAAAGCCTAAGCTAAACGAACTGGACGAAACGACGTTGGAGTTGGAAAATCCGCTCACGCCGTACCCAGCAAACGAAATACAGGAAGCTTGTAAAACAGCTAACAAAATCAAAGCAGCTACACAAACGGAGGACATTGAGGAAGAAAATCAGCAGCAGGAACATGAATACGATGATGCAAGCACTGATCTActgcataatttatgcaatgcATATAGTAATGATGACAGTAATGCTTCCACTGTCACCAGTCTCAAAGGGGATCAACAGAAGCAGAGCACGGTCAAGGAAGCTACAGTACGCCGTAAATCCTATCAATGCAGCGCGTGCCCTCGTGCCTATGCTTTGGCCCAAACGCTGCAGCGGCACATGCGTCAGGAGCATGACAAAACGGAACCAGAAACAAAGCTATTGTCCTGTGAGCAATGCGAGAAAAAGTTTCGTTCACGTTATCAACTGCAGCGTCATACACAACAGCATCTGCCTATGCCAAAGCGGAAGCTATACCCGTGTAGCAGCTGTGGCAAAAAGTTTACTACACATGCCTCCGCTCAGTCGCACGCACAATACATGCATCAAGAGGAGCGGCCACGTCCTGTCATCTGTGAGCAATGCGGCATTGCGGTTCACTCGCTGAACGCTCTCAAGGAGCACCTGCTCAGCCACACTGATTACGCGCCCTACGAGTGCGATGTGTGCAAAAAGTGCTTTAAGAGCGTGAGTCGCTTGAAGCATCATAAGGAAACACACGATCCACACAAGTACGTCTGTCCCGAATGCGGCATGCAGCTTAATTCACGGCCCACGCTCAATCGCCATCGACTAGTGCACACGGACCAAATGCAACACAAATGCGACTATTGCGGCAGGGAATTTAAGCGTGCAAAGGCACTTAAAAATCATCTTATTTTACATACAGGATTAAAACCGTACTCATGTGATTTTTGCGATCGTACCTTTGCCAATGGATCCAATTGTCGGACTCATAAGAAAAAATCACATCCGGAAGAGCTCGCTGCACAAGAAGCATCTGGTGGCGGCAAGACCTATAATCGTAATATACCAAAACTAGAGGCGCTCAAAGCATTtacAAAGAACAAGGACAATTTGTCACCTGTGGCCACTAAGCAGAGCGGTTGCTTTGCCTTTGGCAAAAAGGCGAGAGCTCAGTTAAAAACAGATGCTACACCTGCATCAATGCCCGCTGCTAATGCTGCAACCGGCGTGCCTACCATAGACAACATTTACAATCACCTTATGAATGAATCACAAGTGTCAAAGGCCACAACAGAAGCAAACTATGCACAACCTCAACAACAGTTGGTGCTGGCCGGCGATGGCAGTGCGACCATTTTAGGCAATAGAATAACAGAGGAGCTACCGGAACCAAACACCACTcagatattttcatattag
Protein Sequence: MAEFTEIENGSDNNEIPSVSDWRLWCRLCAKDDLQGNINVFLKNEQPVPGDRDGDGITAPVSDLALATAIGKYFWVNITRGEELPEMICSECLTLVTSLVNFSERITRVQKLYCILQSTPKKSINMQELRVRFGLLEEEPETLTEVHYVEEKPKLNELDETTLELENPLTPYPANEIQEACKTANKIKAATQTEDIEEENQQQEHEYDDASTDLLHNLCNAYSNDDSNASTVTSLKGDQQKQSTVKEATVRRKSYQCSACPRAYALAQTLQRHMRQEHDKTEPETKLLSCEQCEKKFRSRYQLQRHTQQHLPMPKRKLYPCSSCGKKFTTHASAQSHAQYMHQEERPRPVICEQCGIAVHSLNALKEHLLSHTDYAPYECDVCKKCFKSVSRLKHHKETHDPHKYVCPECGMQLNSRPTLNRHRLVHTDQMQHKCDYCGREFKRAKALKNHLILHTGLKPYSCDFCDRTFANGSNCRTHKKKSHPEELAAQEASGGGKTYNRNIPKLEALKAFTKNKDNLSPVATKQSGCFAFGKKARAQLKTDATPASMPAANAATGVPTIDNIYNHLMNESQVSKATTEANYAQPQQQLVLAGDGSATILGNRITEELPEPNTTQIFSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00805392;
90% Identity: -
80% Identity: -