Halb009837.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000397.1:38899-44728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.3 91 3.9 6.1 2 23 373 395 372 395 0.94 2 15 0.021 1.4 9.6 1.8 2 23 438 459 438 459 0.93 3 15 0.0078 0.54 11.0 0.2 3 23 529 549 527 549 0.95 4 15 0.00025 0.017 15.7 1.2 1 23 557 580 557 580 0.97 5 15 0.00061 0.042 14.4 0.3 2 23 585 606 584 606 0.97 6 15 0.0028 0.19 12.3 0.2 1 22 654 675 654 678 0.90 7 15 1.4 1e+02 3.8 0.9 3 21 685 703 683 704 0.89 8 15 0.034 2.4 8.9 0.4 1 23 723 748 723 748 0.96 9 15 0.086 6 7.7 1.6 2 23 766 788 765 788 0.93 10 15 0.019 1.3 9.7 0.5 2 23 794 816 793 816 0.92 11 15 0.01 0.71 10.6 0.3 2 23 820 842 819 842 0.96 12 15 3.9e-05 0.0027 18.2 4.0 1 23 848 870 848 870 0.98 13 15 0.11 7.8 7.3 0.3 1 23 874 897 874 897 0.94 14 15 5.2e-05 0.0036 17.8 1.3 1 23 903 926 903 926 0.97 15 15 0.00015 0.01 16.3 0.3 5 23 939 958 931 958 0.89
Sequence Information
- Coding Sequence
- atgtcggaaaatgcgaaaaataataatgaaattaatccTAGCTGCCTGCATTGCAGCGTGCACGATTCAAAGCTAAAATATCAAGAGATATTTGATGAAGTGGGCTTAGAAATTGAATTACCCGAACTGCTTGCCaagtattttcaattaaaagtcaaaCCCGATGCACAAAAATCGCAATTGCTATGCAAAGAGTGTGTTAATACGCTAATACGTTTCTTTGACATCGATGAGCTGCAAAGGCAACAGGATGCGGCGAATGCGGCCAAGAAAAAGGATGTCAAAAAGGTTAAAAGTGTGCCCTTGCCCGTGTCCGTCGCtgatgcggctgctgctgccgctgccgtcAAAAAGGGCGCAATAAAGACGTCATCACcagccgtcgccgtcgccgccgctgccgccaaAGTGCCAACAGCTGCCAAAAGTGCGCCAAAAAAATTGACGCTGCCCATAAAGCCGCCAATAAAAAAGACGactactgctgttgctgctgctctacCAAAACTCGAGGAATCCGTTGCCATACGTTTTGTCAAATCTGAGCCTGCAGCCGCACCGGTTAAACGCTTGCAgcaaaaaactaaagataCACCCAAAGCAACAATTAACACACGCGCTGCCAAGGTCAAACTTAATAGACAGAGCTCCAAAGAAACCAATGCTGGTGAACAGGAACAAATAAGCGCATTAATACTTGATATACTCAATGATGGGGAAGCATCCCCAGATGACAAGTTGGCCAAAGCGGCTGCCACATTGCGTCAATTGGAAACAAAGGCAGCTGAAGAGCAGCAAAACGTTGAGCTggagcagcaacaggagcagcagcagcagcaaccggaAGATCAGGCAGATAATGAAGCTATGGAGTTTTTACTCGAGCGTGAAGATAACTCCTCCGAGTCGGATGTGCGTCACTTTAAAGTGGCCAAAATACCTTCAGGCGCTGCATCGCAATCGCAAAATGAGAGCCAAAGCGACGATGATTCACTCAAAGTGGagccatttaattttgtgctaATCAAAGAATCCGATGACATTGGtgatttatatgaatatttggCTACGGTGGTCAAGACTTGCTTTGAAACATTGCTCTTTGAATGGCCCACTGTGTGTCGACATTGTTCattgaaatgtaaaaaatatgagaGTTTATTTACGCACATGGTGCGACGGCATCAGTTGCCCGATGAGCTATACCAATGTCCCATTGAGGGCTGCTCGGCAGAGTTGCAGGGACGTAAATCCTTGGCCATGCATTTGGTTGTGCTACATGCGCCTGTGGCAGAAATACCCATTTATGGCAGTTGCCCGGAGTGTAATATGACTTTTTCgaatatattgcaatataataaacattctTGCGCTCATGTGATCAAGAAACGTCGTGGCGTGCGTTTGTACTGTGAAATGTGCAATTTGGAGTTTCCCTCGTGGAAACGTTACAATTTTCATAATCAATTTCATTTGGAGCGACACAGGCCACGTGCCTGCTTTGTGTGCAGCTATGCAGATACAAATATTGATGATCTATTTCAACATTTGCATTATGCACACGAACCCGAAGGCACACTCTTCTGTGATATTTGTGATCGCAATTTTCGTGATGCTGCCGTTTTTATGGAGCACAATAAAATGCATACCAATGTCAGCAGCACAACTTTTAGTTGCAAGGAATGCAGCGCCAATTTCGATACACGCGGTCGTCTTAATAGTCACAtgCGTTCTACGCATGGCACTGTCATCAGTTGTGAGCTGTGCAGTCGTGAATTTGCCACAGAGGGCACTTACAACATTCACATGAAGAAACATTTGATTATTGAGCGTGAGGTGCATGTTTGCACCAATTGCGGTTTGCTCAGCGAAAGTAATGAGAAAATTATGTCTCATGTGGAAAATGAGGATATAGCTTGCTTTGGTGTTGATATTGCTGTGGAATTGGTGCGTGATGCCTATATTTGTGAATATTGCTCAgcttactataaaaataaagctgatTTACGTGCACATCGTGATTCGGGCATACATAAAGATGGTATATTCTTGTGTCAGCCATGTAATAAGCAATTTCCCGAGATGAAACTTTATCGCCATCATATACGCAACTTTCAGCAAGTGCGTGTAGATGTTGCACATCGCAAACTAGagatatgtgtgtattttatgtgCGATTATgagGATTGCTTGGAAGCGTACATAAATTGGAATTctctatatacacacaaacgtCGCACGCATGATGCAGTTGAAAAACTAGAGTCCAGTCCCAAGCCCAAAGAGGACGAATGGATTTGTCAATTTTGTCGTAAAATTTGCCGCTCTAAAATGTCACTCTCGGTGCATGTGGCACGGAGTCATAACAACAatCATgtcgtttgttttttgtgcaaGGCATCCTATAAAGATCTAGAGGCATTGAAAAAACATCATGCCTATTGGCATGAGCCTATGGAGTGTTCATTATGCTTAAAAGTAGTTAAAAATCGTCGCAATTATGATACACATATGAATGTGGtgcattcaaataataaacgtTATTCATGCAGCGTTTGCCATAAAGGATTCTATCATAAAAGTGAAATGGAGGCACATCAGCGGCTGCATACATTTCATTATAGCTGCGATCAATGCAGTTTCACCACACGGAATGGCAAATCCTTAGCCGTACATGTGCAAGGACAACATTACAAGcgttttgaatttgaatgtAAAATCTGCAATAAACGCTTTGGACGTCGTCAAGGATTATCGAATCATACGAATCGTGTGCATGGCACTAAGATAATGTGTCAGGATTATTTTGATGGAGGCtgtaataaaacatttagtCAAGCGagacaattaaatattcatgtgCGCAAAGTGCACAAAGGCAATTTATTGCTAACCGATAATATAGTCAAGGCGAATAATGCCAAGGATGATTATCTAGTAAGCGATGAGGACaatgaagatgaagatgatCATGATGATGAACCATCTACATCGACAAAGAAACGAATTATACGCATACGCAAAGAAGCACAAACTGATGAACAAagtgttgatgatgatgatgatgatgatcctGATGCCTTGGTAATGGATGCGGAAATCTTTGAAGAATTTCaagagattaaaattaaaacaacatcACCGCGTGCAAAAAGACAAAGGAAAAGTTAA
- Protein Sequence
- MSENAKNNNEINPSCLHCSVHDSKLKYQEIFDEVGLEIELPELLAKYFQLKVKPDAQKSQLLCKECVNTLIRFFDIDELQRQQDAANAAKKKDVKKVKSVPLPVSVADAAAAAAAVKKGAIKTSSPAVAVAAAAAKVPTAAKSAPKKLTLPIKPPIKKTTTAVAAALPKLEESVAIRFVKSEPAAAPVKRLQQKTKDTPKATINTRAAKVKLNRQSSKETNAGEQEQISALILDILNDGEASPDDKLAKAAATLRQLETKAAEEQQNVELEQQQEQQQQQPEDQADNEAMEFLLEREDNSSESDVRHFKVAKIPSGAASQSQNESQSDDDSLKVEPFNFVLIKESDDIGDLYEYLATVVKTCFETLLFEWPTVCRHCSLKCKKYESLFTHMVRRHQLPDELYQCPIEGCSAELQGRKSLAMHLVVLHAPVAEIPIYGSCPECNMTFSNILQYNKHSCAHVIKKRRGVRLYCEMCNLEFPSWKRYNFHNQFHLERHRPRACFVCSYADTNIDDLFQHLHYAHEPEGTLFCDICDRNFRDAAVFMEHNKMHTNVSSTTFSCKECSANFDTRGRLNSHMRSTHGTVISCELCSREFATEGTYNIHMKKHLIIEREVHVCTNCGLLSESNEKIMSHVENEDIACFGVDIAVELVRDAYICEYCSAYYKNKADLRAHRDSGIHKDGIFLCQPCNKQFPEMKLYRHHIRNFQQVRVDVAHRKLEICVYFMCDYEDCLEAYINWNSLYTHKRRTHDAVEKLESSPKPKEDEWICQFCRKICRSKMSLSVHVARSHNNNHVVCFLCKASYKDLEALKKHHAYWHEPMECSLCLKVVKNRRNYDTHMNVVHSNNKRYSCSVCHKGFYHKSEMEAHQRLHTFHYSCDQCSFTTRNGKSLAVHVQGQHYKRFEFECKICNKRFGRRQGLSNHTNRVHGTKIMCQDYFDGGCNKTFSQARQLNIHVRKVHKGNLLLTDNIVKANNAKDDYLVSDEDNEDEDDHDDEPSTSTKKRIIRIRKEAQTDEQSVDDDDDDDPDALVMDAEIFEEFQEIKIKTTSPRAKRQRKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -