Halb004416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hirtodrosophila alboralis
Gene Symbol
RREB1
Assembly
GCA_035043045.1
Location
JAWNNH010000155.1:284431-291767[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.037 2.6 8.8 0.8 1 21 246 266 246 268 0.93
2 13 0.00035 0.024 15.2 0.2 1 23 278 300 278 300 0.98
3 13 8.3e-05 0.0057 17.2 7.3 1 23 306 328 306 328 0.98
4 13 0.3 20 6.0 1.5 2 19 531 548 531 551 0.93
5 13 0.0091 0.63 10.7 0.1 1 23 700 722 700 722 0.97
6 13 1.3e-05 0.00088 19.7 0.7 1 23 732 754 732 754 0.99
7 13 0.00086 0.059 14.0 2.0 1 23 760 783 760 783 0.97
8 13 0.0031 0.21 12.2 2.0 1 23 1035 1058 1035 1058 0.95
9 13 8.9e-05 0.0061 17.1 0.3 2 23 1404 1425 1403 1425 0.97
10 13 0.15 10 6.9 6.3 1 23 1431 1454 1431 1454 0.97
11 13 5.6 3.9e+02 2.0 4.0 1 23 1575 1598 1575 1598 0.85
12 13 0.0087 0.6 10.8 0.5 3 23 1659 1679 1657 1679 0.96
13 13 0.0014 0.095 13.3 4.8 1 23 1685 1707 1685 1707 0.99

Sequence Information

Coding Sequence
atgctggcagcacagcaacaacacacaacaacagcaacagctgccgcagcagcagcaacaacagcggcaacagttGGCGTTGGCAGAGAAATGGAACGCCAGCGTCGTGATTCAAGCACCTCAGAGTCCTCGCTGGAGCATTTGGACTTGGGACGCACGCCAAAGAagctgagcagcagcagcggtgcGCCGCAGCCGACGTCAACGCCGCATGAGGCGACAACACTTACAGCAGCGACGTCGCGCAAGCGTAAGCTgcgtcagcagcaacagcagcagcatttgcTCTCCGACGAAGAtgaagagcagcagcagcagcagcaacaacaacaacaacagcagcagcagctggaacAGTCTACGCAGCGACCGCGTCACAAGCAGCGACGTAGCGCCGCTGCCAGCGCAAGCATCGTTGTCGATTATAGCGCCAGCGGCGACGCCAGTTCGCTGCGCAAAAAGTTTCGCTTGAATCGCAGCAGCGCCAGCGCCAGTGCCAGCGCTAACGGTGAACTCTCCGAGTCGGGCTTTGTCGATGGCAGCGCACACAGCGGCTACTTgctgagcagcagcaacagcagcagcgctgcCAACGCTGCGCagtcaacaacagcagcagcagcagccgcagcatcACAGCATGCCTCTAGCAGCAGCTCGGGCAGCTCCTCGCCCCAAGGCCTGTGCCTCTCCAGCGCCGAATCCGGCATCGTCGCCGGCGATGAGCACATGAAATATCTCTGCCCCATCTGTGAGGTCGTCTCGGCCACGCCCCACGAGTTTACCAATCACATACGCTGCCACAACTACGCCAATGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTCTCTTCTGCATCCTCGCTGGACAGGCACGTCCTCGTCCATACTGGGGAACGTCCTTTCAATTGTCGCTATTGTCATCTGACTTTTACCACAAATGGCAACATGCATCGTCATATGCGTACACACAAGCAACATCAGGCGgcggcacagcagcagcaacagtcgcagtcgcagcagcagcaacagagacgccagcaaacagcagcagctgcaactgttgctggcGGGGCAGcctcagcagcagcggcaacacaGGCCTCAAGCTATGAAAGCGATGCTAGCTGCTCCACAGATGTGTCCAGTGCGCATagccaaagcagcagcaatcaatccaacaacaacaacaataacaacaacaacaacaaaacgaacaacaacaacattgaggaggaggaggaggtggGCAAGCGGCGACATTTGAAGacaaacatcaacaacaacaacattatcaGAAATGAGCGTGAGGATGAGGAGCTGGAGGAGGATGAGCTCGACGACGAGGATGATGTTGAGGATGATGTTGAGGATGACATGGAGGATGTGAATGTGGCACAGGTCATAACCAGCACACCTGATGTTGCCACATTGCTTGCCTCCAGCGACAGCAGCTCCCCTTCGCATTCCCAATCGCCTGGTCTGCTGCTCAGCTGTCCCGCCTGCAATGCGGATGAATTTGAATCCTTGGCTACACTGTGTGGCCATATGGATGCCATGCATGCGGATATACCAGCCAAATGTCGCGAATGCGATGTCATCTATGCCACACATCGTCAGTTGCAGGCGCACAATTGCCGCAGCTTGCAATTGCCCATGTTGTTGGGCGCCAGCTCCTCGCCGCTGCACAAGCAAGAGGCGgaggatgaggaggaggaggagctgcAGCTAAAGCTGGAGCAGCCACGTGAACCGGAACCAGATAGCGAACGCGATGATTTCTTTCAGCAGCTGTATCTTAAGGGCAAAAACAatctgcaacagcagcagcaacaacaacagcagcagcagcaacagttgccctCGCCGATTAAGCATGAGCCGGCGGATCGTCAGGATCTGGCTGATATACAGAGCATATTGAATATGACCAGCTCCAGCTGTACCTCGAGTTTTCTGCGCAATTTCGAGCAATCCGTCAACACGCCCTGCTCCAGCCAATACAGTCTGGATGGCCGGGATGGCGAGGAGGAGGCACAGGATGCCTTCACCAGCGAATTCCGACGTATGAAATTGCGCGGCGAATTCCCCTGTAAATTGTGCAGCGCCGTGTTTCCCAATCTGCGCGCCTTGAAGGGCCACAATCGTGTCCATTTGGCCGCGGTGGGACCCGCCGGTCCCTTCCGCTGCAACATGTGTCCCTATGCCGTCTGCGACAAGGCGGCGCTGGTGCGGCACATGCGCACCCACAATGGCGATCGTCCCTATGAGTGTGCCGTCTGCAATTATGCCTTCACCACCAAGGCGAACTGTGAGCGACATTTGCGGAATCGTCATGGCAAGACGAGCAGGGAGGAGGTGAAGCGTGCCATTGTCTATCATCCGGCGGAGGATGCCAGCTGTGAGGATAGCAAACGTTTGCCGGAACAGGAGCTAAACGAGCTTAGCTATCGCTCAGTGACGCCACCGCCAGTCGTAGCAGAGCCCGCCAGCTCGCAGCTGAAGCACATGTTGCTGGCGGAACCAGCCAagacacagcagcaacaacagcagcagccacaacagcaacaaccgtTAAAGATTCAAGTCAAAAGCTTGGATCAGCTGGTGGATAAGCCGCTGGTGGCGCCACCGACGCCTGCCATGGATCTCAGCATGGATGTGCTGGATCTGAGCAAGAAGCCAACGACAGCAGCTGCTCAACAGCTGCTCGAACGCGAGCAACAGCGCGAGCGTGAGCATgagttgctgctgcaacaacagcaacaacaacagcagcagcagcaacagcagcagcaactgtttgGCGCGGGCGATGCAGCTGCTCAATATATGCAACAGCTGTTCCGCAATCTCATGTTCCAGCAATCGCCAGCATTTCCATTCTTTGGCTTTATGGCGCCGCcgccaacagcagctgctgcggAGAAGGCAACGCCGCCAACAGCCGCCGCAGCgccagcaacagttgccgcaTTGCCAATGCCGCTGCCCGTGCCCCTGCCTGCTGCCGGACCCGTCAAAATGGTCATCAAAAATGGCGTCCTAATGCCCAAACAGAAACAGCGTCGCTATCGCACCGAGCGTCCCTTTGCCTGCGAACATTGCTCCGCCCGCTTCACGCTGCGCTCCAACATGGAGCGTCATGTGAAGCAACAACATCCGCAATTCTATGCTCAGCGGCAGCGCAGTGGCCATCATGTGATGCGTGGACGTGCTGCCAGCTccagtgcagcagcagcagcggcagcagcagcagcagccgccgcagcagccgccgccgcaGCCATGAGCAATCATCATGGACATCATGCGCCCATCTCGGAGCAGGTGAAGTATGCAATATTGGCACAGCAGCTGAAGGCGCGCAAGGAGCCGGATTTGTTGCAACAGGCATTGGCACATGGCTCCAGCAGTGTGGTGGCCAATCCGCTGCTCCATTTCGGCGGCTACATCAGCAACAAGActcacagcaacagcaacagcaatggcaatggcaacaccAACAATGGTCATGCCATTGTTAGCATGGATGATGATGAGCCCAAGCTGATTATTGACGAGGATGATGAGGATGAgtttgatgatgatgtggaCGAGGAGGATGAGCTggatgaggaggaggaggagcaacagcaacagcaggctGAATTGGAGCAGCAGCTGGAACAGACGCAGCAGAAGGACAAGGAGGAGCCCATTGAGTTGGCCAAAAAGGTGGCCGAGACCATACTGGAGCAGGCCATCAAGGCGGGCAAGCCAAATGAGCAAGCGCCCGAGCAAGGACTCctggcgcccgagcagggactcttggcgcccgagcagggactcCTGGCGCCCGAACAGACACTGGCGCCCCAAAAGGCTCACACAATGAAAACGATGATAGCCCAAGTGGAATCCGTGGCCAAATCGCTCAAAGAGGTGGCCAGCTCGCCATTTAAGGACGAATCTCAAGATCTGGTGCCGGTATCCAAGCTCGTGGACAATGCCACCAGCAATCAGGTCTCGTTCAACAGTTACTTTCGTCCCAGCGATGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGCCTAGTTGCCTCCGGTTCGGCCAGTGAGAGCAACAATTCCGGCACCGAGGATgtcaccagcagcagcagcagctgcaatgaGCCCAAAAAGAAATCCGCCTACAGTTTGGCTCCAAATCGTGTCAGCTGCCCGTATTGCCAGCGCATGTTCCCCTGGAGCAGCTCACTGAGACGCCACATCTTGACGCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACCAAAAGCAATTGCGATCGTCATCTGTTGCGCAAGCATGGCAATGTCGAATCGGCCATGTCGGTTTATGTGCCCACCGAGGATGTCAATGAGCCCATACCGGTGCCCAAGTCTGTGGAGGAGATTGAGCTGGAGGAGCAGCGGCGACGCAAGGCCGCCGAGGCGGAGCAGGAGCGTGAACGTGAACGGGAACGGGAGCGCGAAAGGGAACGTGAGCGTGAAAGGGAAAAGGAGCGGGAGCGTCGTCTCTTGGAGCAGGAGCgtgagcaacagcagcagctgatacAGCAGTTGGCCCAACAAATggccgcagcagcaactgttgctgccgccaccgccaccgcggccagcagcagctcacccaacagcagcagcgaggcAAATGGCAGCGATCTGCCATACAAGTGTCATCTCTGTGAGTTTAGCTTTGCGGAGCGGCTGCAGTGCCTCGAGCATATCAAGCAGACGCATGCCCAGGAGTTTGCCCTGTTGCTGGCCAAAGGTGCCATTGAAACGGATGCACTGCACGAGCAACAATTGCCACCAAcatcggcagcagcagcagcagccaattCCGATGATGAGTCCACAGGCGTTGGCATCTCCCGTGCCGGTGGCAAATATCCGGATTATAGCAATCGCAAGGTAATTTGCGCCTTTTGTGTACGTCGCTTCTGGTCCACCGAGGATCTGCGTCGCCATATGCGCACCCATTCCGGCGAGCGTCCCTTCCAATGCGAGATTTGTCTCCGCAAGTTCACCCTGAAGCACAGCATGCTGCGGCACATGAAGAAGCACAGCGGACGCAGTCACAATGGTGAGCATGGACAGTCCGATTGCTCCGATGATGAGCAGCTGGGCACGCCACCAACAACGCCAacacccaacaacaacaacaacaatacttgccacaacaacaacaataacaacaacaataataataataacaacaataataataataataaaagtctgCGTCTGCCCAAGCTGCACGAGCTGCTGGACAAGGCCAATGAATGGCGCGTGAGTCGCCTGGGCGAGCACAAGGAAAACCTCGGTGAGGCAACACCctcagcggcagcagcagcagcagcggcagcagcagcagccgccgcagcAGCGGCCAGCGGTGATCTTATTGGCAATCTGTTGGGCATCAGCGATCAGGGCATACTCAACAAATTGCTCTCATCCGCGGATGAGGCGGCCAAGCTGCTCGGCGTGGACAAGTAA
Protein Sequence
MLAAQQQHTTTATAAAAAATTAATVGVGREMERQRRDSSTSESSLEHLDLGRTPKKLSSSSGAPQPTSTPHEATTLTAATSRKRKLRQQQQQQHLLSDEDEEQQQQQQQQQQQQQQLEQSTQRPRHKQRRSAAASASIVVDYSASGDASSLRKKFRLNRSSASASASANGELSESGFVDGSAHSGYLLSSSNSSSAANAAQSTTAAAAAAASQHASSSSSGSSSPQGLCLSSAESGIVAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQAAAQQQQQSQSQQQQQRRQQTAAAATVAGGAASAAAATQASSYESDASCSTDVSSAHSQSSSNQSNNNNNNNNNNKTNNNNIEEEEEVGKRRHLKTNINNNNIIRNEREDEELEEDELDDEDDVEDDVEDDMEDVNVAQVITSTPDVATLLASSDSSSPSHSQSPGLLLSCPACNADEFESLATLCGHMDAMHADIPAKCRECDVIYATHRQLQAHNCRSLQLPMLLGASSSPLHKQEAEDEEEEELQLKLEQPREPEPDSERDDFFQQLYLKGKNNLQQQQQQQQQQQQQLPSPIKHEPADRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSLDGRDGEEEAQDAFTSEFRRMKLRGEFPCKLCSAVFPNLRALKGHNRVHLAAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASCEDSKRLPEQELNELSYRSVTPPPVVAEPASSQLKHMLLAEPAKTQQQQQQQPQQQQPLKIQVKSLDQLVDKPLVAPPTPAMDLSMDVLDLSKKPTTAAAQQLLEREQQREREHELLLQQQQQQQQQQQQQQQLFGAGDAAAQYMQQLFRNLMFQQSPAFPFFGFMAPPPTAAAAEKATPPTAAAAPATVAALPMPLPVPLPAAGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAASSSAAAAAAAAAAAAAAAAAAAMSNHHGHHAPISEQVKYAILAQQLKARKEPDLLQQALAHGSSSVVANPLLHFGGYISNKTHSNSNSNGNGNTNNGHAIVSMDDDEPKLIIDEDDEDEFDDDVDEEDELDEEEEEQQQQQAELEQQLEQTQQKDKEEPIELAKKVAETILEQAIKAGKPNEQAPEQGLLAPEQGLLAPEQGLLAPEQTLAPQKAHTMKTMIAQVESVAKSLKEVASSPFKDESQDLVPVSKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVNEPIPVPKSVEEIELEEQRRRKAAEAEQEREREREREREREREREREKERERRLLEQEREQQQQLIQQLAQQMAAAATVAAATATAASSSSPNSSSEANGSDLPYKCHLCEFSFAERLQCLEHIKQTHAQEFALLLAKGAIETDALHEQQLPPTSAAAAAANSDDESTGVGISRAGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRSHNGEHGQSDCSDDEQLGTPPTTPTPNNNNNNTCHNNNNNNNNNNNNNNNNNNKSLRLPKLHELLDKANEWRVSRLGEHKENLGEATPSAAAAAAAAAAAAAAAAASGDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00803822;
90% Identity
-
80% Identity
-