Halb002446.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000101.1:508581-510794[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.026 1.8 9.3 0.5 2 23 327 349 326 349 0.96 2 10 2.6 1.8e+02 3.0 0.2 6 23 359 376 359 376 0.97 3 10 1.5e-05 0.001 19.5 0.9 1 23 382 404 382 404 0.98 4 10 0.00023 0.016 15.7 0.5 1 21 417 437 417 440 0.87 5 10 0.00095 0.066 13.8 0.8 1 23 448 471 448 471 0.97 6 10 2.8e-05 0.0019 18.6 1.0 3 23 479 500 477 500 0.92 7 10 0.003 0.21 12.3 0.4 2 23 512 534 511 534 0.97 8 10 0.0009 0.062 13.9 7.0 1 23 541 564 541 564 0.93 9 10 2.6e-06 0.00018 21.9 1.2 1 23 570 592 570 592 0.98 10 10 6.2e-05 0.0043 17.5 1.4 1 23 598 621 598 621 0.97
Sequence Information
- Coding Sequence
- ATGGCCAGGTGTGTGCTTTGTTTTGGCAACTGCAAGCTGGGAGAggcctataaaatattttccgaaGATGGTTTGCGGCTCAACATTtgcacaacaataaacaaacatttttggcTTGAGTTGAGCAGCGCTAAGGACGGACGTCAGGAAGTTTGCCGCGAGTGCTGGAATTGCGTGAGCAGTTTTCATGAATTTTACCAGCGCATCTACAATGTACACCACTCCATCGAGTTTTGTGGTGAGACCGAGTCAGCTAATCCTCTGGCGTTTAGTGCTGAAATGGATGCACTGGCCGAGGATTTCTTTGCAACTGGCGACGTCAAGGTGGAGGTTAACGAACTGGAGCCGCTGCCAAAGTTGGAAATGATCGAAGAACCAGAGCTTCAAGAAACGAGCACAATCACGCCTACAAAGCGCGCTTGTGACGATTATCCAACCAGTACTAAGCGTCGCATTAAAAACGAGAAGGTAACGGTGGCCAGTGACTCGGATGGGGACATACCGTTGGCTGAGTTCCTCGACCTGAAAAACTCTGTAGTAaaaccagcagcagcaccagatGTTAAGCAAACGTCAGTCAAGGGACGACAATTGCGTAGAAGCACTCGACGTGGCCGTAGAGCGAAAACGCCACCATCCTCTCCGCTGGGCAGCTTGAAAAAGGAGTTGGAAACTGATGACGAGCATGATATTGATAATGACATTGACTTTGTGGCAGCAGAAGCAGTTCTGGGCACTGATGATAGCGACAGTTCTAGTAACAGCAGCGATACCGATTCTGGCGGCAGTTTGCCAGACATTGAGCCAGAAGAGCGTTACGCCGAGATACCCAAACGGGTTATAGTCAAGCCCAAAAAGTACCGCAAGCGTCCAAAGCCGCTGGTGCCGCCTGTTCGCATGAGTCGCGAGGAAATTGAAAAACGTAAAGCCCAACAAAACGAATTCGATGAGattatatttgactttttcAAGAAATTGCCATGTCACGTGTGCAATCTGCTGGTGCCCAATTTCGGCGATATGCGACGTCATCAGCGAATGTCCCACAATATGGAAAGTGGTTTTATATCTTGCTGTGGTCGCAAGTTTCACATACGAAAGGGCCTAGCCGAGCATGTGCTCGTGCACAAGAATCCTGAGCACTTTATGTGCACGCAATGCGGTCGCGTATTTCAGGATTCAAAAACGCTCGAGACCCATGAGCAAACGCACACAAATCCTCAAGGGGATTCGAAGGATAAGCGCACTTATCAGTGCGACAAGTGTCCTAAAGTTTTCACAACAAAAGCGGCTGTCGAGTATCACAATGTATCCAAGCATGTACCCAAGTCCGAGTTTAAGTATAGCTGTCCCGAGTGTAACAAAAAGATGCCCACAGAGCGCAAGTTGAAGGAACATTTGCGCTACATGCACGATCCAGAGACTGCCATAATTTGCGATAAGTGCGGCAAAACGTTGCGCTCTCAGGCAAATCTCAAGAAACATCACGAACTAGAGCATTCCGATACCCCACGTCCAAAGCCGGATCCAGTGCAATGCGAAATTTGTGGCACTTGGCTGCGACATTTGTCCGGGCTCAAACAGCATATGAGTACCGTTCATGAGCCACCCGGCGGCGAGCATCGCTGCCACATCTGCGACAAAAAGTCGACAAACTCACGCGCACTCAAGCGACACATTTATCATAATCATCAATGCGAAAGAAAGTTCCGCTGCACCATGTGTGAGAAGGCCTTCAAGAGGCCACAAGATTTGAGAGAACACACATCTACACACACGGGCGAAGTGCTCTACACTTGTCCCAACTGCCCACAGACGTTCTTTTCCAATGCCAACATGTACAAGCATCGCCAGCGACTGCATCGCGCCGAATGGGAGGCGGATCGCAAGAAACCGCTGCCGCCAAACATAATGCAACAAGCGGTTGGCGCCACGACGGCAATGAAAAAGCGTCAGGTTGGAAATAGTGGCACATCGCTATTTTCGCAACCACAACCTGATCTTGCAGCGGATGTCCAGAAACAGGAGCCGCAAATGcgatag
- Protein Sequence
- MARCVLCFGNCKLGEAYKIFSEDGLRLNICTTINKHFWLELSSAKDGRQEVCRECWNCVSSFHEFYQRIYNVHHSIEFCGETESANPLAFSAEMDALAEDFFATGDVKVEVNELEPLPKLEMIEEPELQETSTITPTKRACDDYPTSTKRRIKNEKVTVASDSDGDIPLAEFLDLKNSVVKPAAAPDVKQTSVKGRQLRRSTRRGRRAKTPPSSPLGSLKKELETDDEHDIDNDIDFVAAEAVLGTDDSDSSSNSSDTDSGGSLPDIEPEERYAEIPKRVIVKPKKYRKRPKPLVPPVRMSREEIEKRKAQQNEFDEIIFDFFKKLPCHVCNLLVPNFGDMRRHQRMSHNMESGFISCCGRKFHIRKGLAEHVLVHKNPEHFMCTQCGRVFQDSKTLETHEQTHTNPQGDSKDKRTYQCDKCPKVFTTKAAVEYHNVSKHVPKSEFKYSCPECNKKMPTERKLKEHLRYMHDPETAIICDKCGKTLRSQANLKKHHELEHSDTPRPKPDPVQCEICGTWLRHLSGLKQHMSTVHEPPGGEHRCHICDKKSTNSRALKRHIYHNHQCERKFRCTMCEKAFKRPQDLREHTSTHTGEVLYTCPNCPQTFFSNANMYKHRQRLHRAEWEADRKKPLPPNIMQQAVGATTAMKKRQVGNSGTSLFSQPQPDLAADVQKQEPQMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00508523;
- 90% Identity
- -
- 80% Identity
- -