Halb004844.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000191.1:263508-272420[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.054 3.7 8.3 0.2 1 23 1349 1372 1349 1372 0.94 2 13 8.7 6e+02 1.4 0.2 1 23 1538 1560 1538 1560 0.91 3 13 0.00019 0.013 16.0 2.7 2 23 1563 1584 1563 1584 0.97 4 13 7.5e-05 0.0051 17.3 0.2 3 23 1592 1612 1590 1612 0.98 5 13 6.2e-07 4.3e-05 23.9 4.1 2 23 1619 1640 1618 1640 0.97 6 13 5.9 4.1e+02 1.9 0.4 5 23 1653 1671 1651 1671 0.96 7 13 1.5 1e+02 3.8 5.4 3 23 1678 1699 1676 1699 0.93 8 13 0.16 11 6.9 0.2 2 23 1710 1730 1709 1730 0.96 9 13 5.9e-05 0.0041 17.6 0.4 1 19 1736 1754 1736 1758 0.95 10 13 1.7e-05 0.0012 19.3 0.5 1 23 1766 1788 1766 1788 0.98 11 13 0.00011 0.0077 16.8 7.6 1 23 1794 1816 1794 1817 0.96 12 13 0.00022 0.015 15.8 5.9 1 23 1822 1844 1822 1844 0.98 13 13 0.031 2.1 9.1 8.2 1 23 1850 1872 1850 1873 0.95
Sequence Information
- Coding Sequence
- ATGGTTGACAGTGTGCAGTGTCCCGTGTGCACTTTGTACCTGCATGCGGGTATGAATCTCTCCGATCATTTGGAGACGCATCCCAAGGAGCAAGTGATCAAGGCTCTGGTGCAAATGACAATCGCTGGCAACAATGGCATGGGCAGCGCCCTGGCGGTAGCTGCACTCTCGACTGCCGTCAGCGGTGCATCATCAATAGATGGTGCCAACTCCGCCACCACCTCATCAACCTccacctcctcctcctccttaACAAACCCTGCTGCTGATGTTAAACCCATTgtagctgcaacagcagcaacaacaacaacagcagcagcagcaacaacacaaccaacaccaacaataTCATCAAAATCAACAGCAACCAAAGCTGCAACATTGCTgggcaatagcaacagcagcagcagcaacaaattgagCAATCCACCGATTAAGGCAGTTAAAAGCGCGCCGCCACCCACGACTGAGGCGCCAGCCACCACATCCAATACACCCACCATAAGCAGCGTGGCCGCTGTGTTTCCGGCAGCGTTGGCAACCGACTATCGCTACGACCaccagcatcagcagcagcaacgggcCACGGCAACGGCgacaacagcaatagcagcaaGGCTTCATGGCTTTCCACGTGGTGCCACCACAACGCTGGTAATACCACAAgcgccacaacaacaacaacagcagcagcagcatcatttCCTGGCCACCACCCAACAGACTGCGCATTTTGcccatcagcaacagcagcagcagcaacagtcggCCATGAAATATACGTATACAACtgcgctgccgccgccgccgccaccactGCAGCTCTTTGCGCAGCAGGCGACAACATCGCAGTCGCATCAGAAGCCACCGCCCGCCTATGGCACCGCCATCAGTCAAATTCGATCTCAGCACAACCAaaataagcagcagcagcagcagcaacatcaacaacagcaacagcagcagcagcaacaaaatataaacaacgtACAACATAACGTTAACCTAGCACCACCGAGTGGCAAACACAACAAAGTTCATACGGAGATCTTTTTAAATCCACCGCCGCCTCCACCGTCACAGTCCTCGATgacatcatcgtcatcatcagcGGCGACGACAACCTCCTCCTCTTCAAGACTGCAACatctacaacaacagcaccaACAATCGCCTgcagccaacagcagcagcagcagcaactatgTTGCCAGCAATATTTACAGCTCCACATCCGCTCTGATGACATTGCCGTCATCTGGTCGCATTGGCAGTCGCCAGTCGAATAATTCGCCATTTGGTGCGCTCCTAAATGCCGCGGCTCAAGCTGCCTGCGCCTCGCCCGCCTCCTCGAGCGCTTCAGTGCTGCGCTATGCCGAATCTCCAGTGGCTCATTATTTGGAGCGGGATAATGGCGATTTTATAGTGCAGGAAACGCCCAAGCATATTGTGGAGTGTGTGGAGAAGGAGGATGGCGAATTTTCTGTCATAGAGCGCATCTATCAATCGCCTCCCAGCGTGTTGCACATTCATGATGACGATGAAGAGGAGGATGATGAAGAGGGTTGGGCAAACAGCGATGATGAGGATCATGTAAAGGTGACGCATGAACACGTGGATGATGGTGACGATGAGCGCGAGGATAGCCGCAGCAGAGTTGGCCCAAaaaccacaacagcaacaacagcagcaacaacaacaacgaaaaaatCACGCAAATCCAAAGGCAGCGGCAGAAATGTGCACAAGCGTGCAACATCCAAGCATCAGATGGCAACGACAGAAGATGAGGACGATTTCATGAGCATTGGCAGCAGTTGTGCTGAAAGTGAAGAGCAATCGTCGtcagagcagcaacagcctaCAAATGGGGCACAGATGAGCTTGCCACAGCTTAGCACGGCAGCATCAACAAGCAGtgccgcagctgctgctgctgccgccgccgccgttgTCTCTGGCAATGCGAGTGCCActtgcagcagcggcaacaagtCCAAGAAGAATCGCGTTACAGTGCTCAGTGATGTGCCGCTTAATATGAATGAATATTTGGATCTGGTGGGCAATATTGTGGCATCGAGTCGCATTGGTGCAACGCGTCCATTTGCTGCGATGGCGCCCATACCCTTGGTCAAGGTTGAGAAAGAGGAGCCGCTGGATGATTGTGACAGCGTGCTGCAGGCGGAGGCAAAGCCCAGCATAGAGCATGCCAgtggtagcagcagcagcagcagttgcaacagtagcagcagcaatagtTGCAGCAGTGGACACGGCACCACCAGCGTCATACGCATGGCCAGCGCTGTCAATAATGTTGCGCCCGAGGATCTCACACAGCCGCCACCTATGAAAGTGGAGGTGGAGGCAACAACGTTGCTGCCGCAACGCTTCACAACGCCGGCGCAACAGCGTGGACCTAAGAAATTAGTCATCAAACcaaaggcaacagcaacagctacaacagcaacaacaacgacgacgacgatgatgaaAAAGACTGACAACAGCGCCGAATCAATCCTCAGCATATCAAAGGCATCTAcggagttgcagttgcaaataaaaagcGAGAATATGgagacaacgacaacagcaacaaccacaacaacaagtggcaacagcagcagcattctAGAGAAGCATCTAACCACAAGCTTTGCGGCACGCAAACACTCCTCGgtgaatgatgatgatgcacgCGTCCTCTTAGAGTTTGCCAACTCGAAGCAGCTGCCATTGGCTGCAGGTAGCAGCAACCACACTACATTTGTGGTAAATGCGGCAAGTTTTGCCTCGGCTGGCTCTGTATTTGCCAGTGGCAGCAATCAGAAGGTTAACAAGGCGGGTGAAGAGTACATTTTGCCCGATGATAACAATCTGGAAGTGGATGAAATTGTGATATCCTCCTCGTCTTCCTTTACCTCCAactcgcagcagcagcaacagcagcagcaacaacagcaacagcagcaacaacaactggcaACAACTTCGGCGCATGCAGCGGCGTTGCAACACTCGGAGACGCCCGCCTTTaatgactttaattttttgtatcatcaaagtgcagcaacagcaacaacaacagcgacaacaacagctgccaaCTTTGCACCCTTCGgcttgcaacaacagcagcagcaacaacagttgcaacatcagcagcatgGCTCTAGCGAAGCCACCAATGCTGCAACGCTTGCCTCCTCCTCTAGTAATTCATCTGTCTTGGATCACGACTCCTCCATGAATGCCACATTTCGTGTCGCCAAGCCAGAGTCCATGCTGGCCGCCTGGTATCAGccacatcagcaacaacagcagcagccgcagtcaacaacaacaacatcaactcaaaatcaaaatgttgaaCAGTCTAGCAATTTTATTGCCGCATTGGCAGCTGTCGATTGTTCCAGCGTGGCTGTGGACAGTGATGCCAGCGATGCCAAGTATTTGGATTTGGATGCCTGCAAGCGGGAACAGCTAAGCAATAGCAGCAGTCATTTGCCCTCTGCCTCCGCTTCGACGACATCCTCATCATTTGCTGCCGCCGCAACCGAGAGTAGTCTCGTTGGTGGCCTGGGCTTGCACATACGCACCGATGAGAAGATGCCGGCCAAGGGTGAGATTTCGGAGCAGGAGAGCAACTGCGACATTGAGAACTCCTGGAGTCAATCGATGTACGGTGACATATCACAGCGTTACTTTAGAAATCAGTTTAGCGATGGCTACAATCAACAGCTGGCCGATTGGCGTCACGATTATTATCCAGCGCAGGATCTCAGTGgccagcatcagcagcagcaacataagcgCAGCTTTGATTTTAACTCAGTTGCCGCCGAATATGCGCAGCCAAGTGAGCTGGACGCTTCCTCGAGCTCTGCAAGAAATATGCTGGATGCACCTTCCTCGTCGTCATCGGCTTTGCTGGCTGGTCCACCAATAGCCTCGACATCTAGAGCTGCCGCTGAGGCGGAGGCTGTAGCAGCCGCAGCTATGGCGCAACAACGTAAGCCACCGCGTCGCAAGATCTACAAGTGTCCGCATTGTGTGGCCATATTTGAGAAGCTTAAGGAGCGCAATGCGCACATGATTGGCGAGCATAACTATGTGCGTCAGAATCGACGCCTAATATGCACGCAGGCGTTGGTTAACGAGACGCTGCTGGCGGCACAACCGCAAAttcagccacaacaacaacaacagcagcagcaacagttgttgttgcaggcaGGCGGCAGTAATGATATCATGCAAGAGGATTCCAAGGATGGCattgtaaaaatcaaacaagagAATTGTCAGGATAAGCACGATACATCAGAGCAGCTGCTTGGCCACTTGGAGTTGCCAGATGTCAAGGATGCGGGCTTGCTGGACGTGAACGGTGAGAGTGGACGCGATGCGGCGGATATGAAGCCACCAACTAGCGTAACTGAACTGGACGAAAAGCCTACAATAGCACCGTTGGCCATGACTACGCCCGCTGCCAAATTGGCGGCTCTATATCGCATGCTGATTGCCTACAATGAGTCAAAGCTTGGCCAGGAACGCAACAATCTCAGCGAACTGGAACAGAAGGCAATGgagaaatcaatatttttatgctatGTCTGTCGCACCGATTTTCCATCTGTTAAACTCTACGATGCACATTTGACTGAACATCCTGCCGAGTGTTTTACCTGTGGCAAGAAATTTTATCGCTGGAAAAACTTCTCATTGCATCTGAAACGTCATCTCGGCTGGAAGGAGTTTGGTTGTTATGTCTGCGACAAGAAATTTGTCGTGCGCAGCGCCCTTGTCGAGCACATGCGCATGCATACTGGCCAGACGCCCCTAAAGTGTAAGATTTGCGgtaaaaAATTCAAGCGATATTCCAATTTGACACAACATCGTAAACGTCATACTAAAATCCTGGTGCGTAAGAAGGAATACGTGTGCCATTGCGGCGAGGTGTTGCCATCCAAAGCACGCTTCCTGTGGCACAAGGAAACGCACGACTTGAAGCCCAAATGCTGTCCCTATTGCTGCGATCGTTTTGTGCACGCCAACTCATTGCGTCGTCATATTCGATTGGCCCATTCGGATAAATTCGATTATGCTGAGCCCATGGAGTGTCCGATGTGCAAACAGATTTTTGCCAAGACGTCGATTAAGGCGCACATGGCGACACATTCAACAGATCCGCAATATGATTGCGCTATCTGCAACAAAAGCTTCTCCACAAAATGGAATCTCAAGATACATTCATGGGTGCATGCCAATCGTACGGCCAAGCCCTTCAAGTGCGAATACTGCCCCAAGGCATTTGTGCGCGAGCTGGACTTTAAGAATCATATGAATGCCCATAAACAGATTAAGCCCTATACCTGCGAGTATTGCGGTTGCAAGTTCATACGCAAGTACAACTATATGCGGCATCGGCGGGAGCATCATGGCAAAAAGAAGTTCACCTGTGACCAGTGCGACAAGTCCTTCCATCGACACTACTATCTGATCGAGCATCGGCGTATACATACTGGAGAGCGTCCCTTCCATTGCACCATTTGTGGCAAGAGCTCCACAACGAAGACCAATCACAATAAGCATCTAAAGATTCATCATTCGCGTGATCCCTTCACCGTGGAGGTCTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIAGNNGMGSALAVAALSTAVSGASSIDGANSATTSSTSTSSSSLTNPAADVKPIVAATAATTTTAAAATTQPTPTISSKSTATKAATLLGNSNSSSSNKLSNPPIKAVKSAPPPTTEAPATTSNTPTISSVAAVFPAALATDYRYDHQHQQQQRATATATTAIAARLHGFPRGATTTLVIPQAPQQQQQQQQHHFLATTQQTAHFAHQQQQQQQQSAMKYTYTTALPPPPPPLQLFAQQATTSQSHQKPPPAYGTAISQIRSQHNQNKQQQQQQHQQQQQQQQQQNINNVQHNVNLAPPSGKHNKVHTEIFLNPPPPPPSQSSMTSSSSSAATTTSSSSRLQHLQQQHQQSPAANSSSSSNYVASNIYSSTSALMTLPSSGRIGSRQSNNSPFGALLNAAAQAACASPASSSASVLRYAESPVAHYLERDNGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEEEDDEEGWANSDDEDHVKVTHEHVDDGDDEREDSRSRVGPKTTTATTAATTTTKKSRKSKGSGRNVHKRATSKHQMATTEDEDDFMSIGSSCAESEEQSSSEQQQPTNGAQMSLPQLSTAASTSSAAAAAAAAAAVVSGNASATCSSGNKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGATRPFAAMAPIPLVKVEKEEPLDDCDSVLQAEAKPSIEHASGSSSSSSCNSSSSNSCSSGHGTTSVIRMASAVNNVAPEDLTQPPPMKVEVEATTLLPQRFTTPAQQRGPKKLVIKPKATATATTATTTTTTMMKKTDNSAESILSISKASTELQLQIKSENMETTTTATTTTTSGNSSSILEKHLTTSFAARKHSSVNDDDARVLLEFANSKQLPLAAGSSNHTTFVVNAASFASAGSVFASGSNQKVNKAGEEYILPDDNNLEVDEIVISSSSSFTSNSQQQQQQQQQQQQQQQQLATTSAHAAALQHSETPAFNDFNFLYHQSAATATTTATTTAANFAPFGLQQQQQQQQLQHQQHGSSEATNAATLASSSSNSSVLDHDSSMNATFRVAKPESMLAAWYQPHQQQQQQPQSTTTTSTQNQNVEQSSNFIAALAAVDCSSVAVDSDASDAKYLDLDACKREQLSNSSSHLPSASASTTSSSFAAAATESSLVGGLGLHIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISQRYFRNQFSDGYNQQLADWRHDYYPAQDLSGQHQQQQHKRSFDFNSVAAEYAQPSELDASSSSARNMLDAPSSSSSALLAGPPIASTSRAAAEAEAVAAAAMAQQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALVNETLLAAQPQIQPQQQQQQQQQLLLQAGGSNDIMQEDSKDGIVKIKQENCQDKHDTSEQLLGHLELPDVKDAGLLDVNGESGRDAADMKPPTSVTELDEKPTIAPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKILVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGKKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -