Halb013687.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000630.1:191925-194964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 10 6.9 0.1 2 23 114 136 113 136 0.94 2 13 0.0019 0.13 12.9 3.2 2 23 143 165 142 165 0.93 3 13 3.9e-06 0.00027 21.3 2.9 2 23 180 202 179 202 0.96 4 13 0.012 0.81 10.4 9.1 2 23 485 506 485 506 0.97 5 13 2e-06 0.00014 22.2 2.9 1 23 512 535 512 535 0.95 6 13 3.2e-05 0.0022 18.5 0.5 1 23 540 563 540 563 0.96 7 13 6.7e-05 0.0046 17.5 5.5 1 23 581 603 581 603 0.96 8 13 0.00026 0.018 15.6 1.3 1 23 608 630 608 630 0.98 9 13 3.5e-05 0.0024 18.3 1.7 1 23 636 658 636 658 0.95 10 13 2.5e-05 0.0017 18.8 0.7 1 23 664 686 664 686 0.98 11 13 3.7e-07 2.5e-05 24.6 2.7 3 23 694 714 693 714 0.99 12 13 2.5e-08 1.7e-06 28.3 1.0 1 23 720 742 720 742 0.99 13 13 2 1.4e+02 3.4 5.8 1 19 747 765 747 770 0.89
Sequence Information
- Coding Sequence
- ATGCCGGACAACTATAACCAATTCGATGCAGAGCGCGTCTGTCGCGTTTGCTTGCGCGATGTGGGCGATTTCTACTTCATCTACGATGAGGCGCCCGTCGAACAGGGTGCTAACATCGTCCAGATACTTAACGAATGCACACGCTACACCTGTGAGCGATACGACAAGATGCCTCACCATATGTGCGATACGTGCATTAAGGCCGCCTGCCAGGCATTCCGCTTCAAGCGGGACGCTGAGAAATCCTATCGCTCGCTGGTGGCCATGCTGGGTCGTACACCCATAGCCAAACCAAATAGCAGCGATGTGTGCACCCAGACCGAGCAACTACCGATGCTGCCATGCGGCATCTGTGATGAAAAATTTCTCAATGTAATTGAGCTTCGCATGCATCGCAATCGACAGCACAAGCAACTGGAGCAGCTCAAGTGCAAGCTGTGCCATAAACAGTTCCAGCAATTGCGACAGTTGCGCAATCATCTCATAGAGCAGCACGATCAAAAATCTGGCTCACCCGTTGTGCTGCGTCCACGTTTGGAGTGTCGCGTTTGCCAACGCACCTTCTCCCGACGTGATCACATGCTGCGTCATATGCGCACCGTCCATAAATTGAATGCATGGGAGTCCCGGCGCCGGGCGCTGGCACAAGCAGGGGCGCCTGAAGAGGAGACAATGCATGACGGCGACGAACTGGAGTCAGCTGCCGTTTTACTCAATTCCAATGCCAGCTCGGACGACAACAACGAGCATAACGAGAGTGGCTATCAATATCATACCAATCCCATATCAAgcaacgatgatgatgatgaagaggCTGATGCTGAGGCTAAAAAATCACTATGGCTGCACATTAAACCCGAACCTGAATTGGAACTGGAGCCGGACCCAGATCAAAGCCCAAAGGCAGAAACAGCTGTTGCCCAAGTGAAGCGTGAGAAGCGCGAGAAGCGCAAAAGAAAGACTAAGCTAGAAGCTggaacacacacagacactgAGGATGAGAATGAAAGCGAAGATAATGTGAAAAGTGCGGCCAGTGCGCTGGCGACAGCAGAGGTCAAAGAGGAACCAATGACCGTTGGCGGGGAACATCCAATGGCCATAAAGCAGGAACGACAGCGCAGTGATAGCGTCAATGAGGATGAGGAGGATGAGTTTGAGCTAGAGCCCAGAGGAGCGAATATGTTGCAAAGCTCCGATGAGGAGGAAGATGATGATTTTGGCATTGAGGAAACTGACgttgatgacgatgacgatgatgaggatgaACCTGATGCAGATGGAGATGCCGATTCAGAGCTAGAATCTAAAGGCAAGCGCAAGCACAAGCAAACACAGGCCGCCCAAGTGGAAATTGTGCGCGAATATTTGCAGAAACCAAAGGCTGGGGGCAAGCagcgacgtcgtcgtcgtaaCAAAGATAACACTGATATGCTAAATAATCCGGAGAATCGTTGTGATGTTTGCCAGCGTACCTTCTCTCGCCACTGCCATTTATTGCGTCATAAATTGTCGCATTTGGAGAAGAAGCCGCATAATTGTCCGCATTGCCCCAAGGCGTTTGCGCGCAGCGACCATTTAAAGGCGCACGTGCAGAGTTTGCATGGCAACAAGGAGCACAAGTGCACACTGTGCGATGCGGCATTTGCCCGTCCCGACGCCCTTGAGCGGCACAAGATGAGCAAACACAATGGCGAAGGACTGGACGCCTGTAGCGAGCTTAAACTACAAATGAACGAGCATACATGCGAATATTGCTCAAAGCGTTTCTCTAGCAAGACATATCTACGCAAGCACACGCTCCTTCACACCGAATTCCTCTATGCATGCAAGAGCTGCGATGAGACCTTCAAGGAGCGCCAATTGCTGCGCAGCCATGAAAAGACGCACACTGGCCAGCGGAATTTCCTTTGTTGCATTTGCGGTGACAGTTTTGCACGCAATGATTATTTGCGCGTTCACATGCGGCGTCACAATGGCGAGAAGCCATACAAGTGTCGTTACTGCGTCAAAGCATTTCCACGCGCCACAGATTTGAAGGTGCATGAACGTTATCACACCGGCACTAAGCCCAATCTGTGCAATACCTGTGGTAAGAGCTTTCATCGTGCCTACAATCTGACCATACACATGCGCACCCATACGGGCGAGCGTCCTTATAAGTGTGATCAGTGCCCCAAGAGCTTCAGCCAGAGCAACGACCTAAAGGCACACATACGACGCCATACCGGCGAGCGGTATAAGTGTCCACATTGTGATTCTCATTTTctgcagctatataatatgcGCAATCATTGCCTGAGTGTTCATAATACGCACATTGAAACCAAAACAGGACGACTGCAACGCACGGGCCTGTTAGATGAGTCGAATCAATCCCATCTGACCACTGTGGTGATACCGCCGCCTGGACGTTTTCAACAGTCAACGCCAGATCACATAATGGCGGCACCAGTGGCTTACAATACAACATCGCCAGCATCAGTTGCAGTGCCAGTGCCAGTGCCCGTGCCGGATGCAACCGGATTTGCAAGCTCGACAACAGCTACAACGGCAACGGCGCCCTTTGGTGCATTTAATATACCGCAGGTTGTAATGGCACAACTTATGTATAGTGGCAACAGTCAGCAAAGCAATGCTAGCGGTGGTGAGGCAGGAAAATAA
- Protein Sequence
- MPDNYNQFDAERVCRVCLRDVGDFYFIYDEAPVEQGANIVQILNECTRYTCERYDKMPHHMCDTCIKAACQAFRFKRDAEKSYRSLVAMLGRTPIAKPNSSDVCTQTEQLPMLPCGICDEKFLNVIELRMHRNRQHKQLEQLKCKLCHKQFQQLRQLRNHLIEQHDQKSGSPVVLRPRLECRVCQRTFSRRDHMLRHMRTVHKLNAWESRRRALAQAGAPEEETMHDGDELESAAVLLNSNASSDDNNEHNESGYQYHTNPISSNDDDDEEADAEAKKSLWLHIKPEPELELEPDPDQSPKAETAVAQVKREKREKRKRKTKLEAGTHTDTEDENESEDNVKSAASALATAEVKEEPMTVGGEHPMAIKQERQRSDSVNEDEEDEFELEPRGANMLQSSDEEEDDDFGIEETDVDDDDDDEDEPDADGDADSELESKGKRKHKQTQAAQVEIVREYLQKPKAGGKQRRRRRNKDNTDMLNNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHNCPHCPKAFARSDHLKAHVQSLHGNKEHKCTLCDAAFARPDALERHKMSKHNGEGLDACSELKLQMNEHTCEYCSKRFSSKTYLRKHTLLHTEFLYACKSCDETFKERQLLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCPKSFSQSNDLKAHIRRHTGERYKCPHCDSHFLQLYNMRNHCLSVHNTHIETKTGRLQRTGLLDESNQSHLTTVVIPPPGRFQQSTPDHIMAAPVAYNTTSPASVAVPVPVPVPDATGFASSTTATTATAPFGAFNIPQVVMAQLMYSGNSQQSNASGGEAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -