Halb014954.1
Basic Information
- Insect
- Hirtodrosophila alboralis
- Gene Symbol
- -
- Assembly
- GCA_035043045.1
- Location
- JAWNNH010000730.1:134869-136470[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9 8e+03 -3.2 0.3 1 8 294 301 294 301 0.92 2 4 1.5e-16 2.5e-13 49.6 0.0 2 45 364 407 363 407 0.95 3 4 0.016 26 4.7 0.0 27 37 436 446 427 451 0.86 4 4 1.7e-20 2.7e-17 62.3 0.0 2 42 473 513 472 515 0.96
Sequence Information
- Coding Sequence
- ATGGGTCATTCGTCCACAATAATGGATATCCAACGCATTCTGCTCAGCCAGCAGAGCACCAACCAAAGCTGCGAAGTCCTGCTGGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTATTTGTACTGAGCACATGCAGCGATCTGATGCGCAATCTATTGGTCGATTTACCCATTGGCCAGGAGGCAACTATTATCTTGCCTGACATACGGGGCGAGTTAATGGAGAGCttgttatcatttatttacatgGGAGAAACAAGCTTACCCTCGGCACTGCTTACCGAATTTCTGGAGGCCATCAATCTTTTAGGCATAAAATCGGCCATTAGCTTTGAGACCAATCACACAACAATGACAGCCTCCAATGTGGGTAGCGGTGCCATGGCTGTTGAGGCAGCAAAGTCAATTAGTGGTCTGCATATTGCAAATTCTGCGCTCTTAGAGGAGGAAGAGGAAGAAGATGCCAACGCTGTGGCAGGCAAAATGGAGGTGGGAAATTCAGTGCTCGCTGACCCACAACACCCACAACAAGTGCAGGAAGGACGCTCATTGGAATATCTCGATGTATACAGCAGCGATCAGCCAAAAATATCGTATTCCATTGAACATATGGACGGCACAACTGGCGAaagtcaatatatattaactgaGAACACGGGAACATTTACCATAACACAATCAACAGGAACCCTGACTAAACTGGGAGAAACTGCAGGCTCCGCTGTGGTCAGTGCTGAGCTAGCAGAGGATGATGCTGACGGTGAGGATGATCACGACGAATCCGAATCACAGTTAATCGAAGAAGAGTTTGTCGCATCAAGTGGTCCCTTGATAGAGTTAAACACGGATGCAGATGCGGATGTCGATGCTGACATGACTGAAGATGCAATGAACGAGGCTGATGGCGGAGAGGAGGAGGAAGAAGATGATATGCTTGATGTGAAACATCGCAAAATGCAACTAACtatgaaaatgttgaatacaAGAGAACGCCATCGAGCGACGCCCTCGAAGTTttctaagaaattaataacGAAACAGCATCAACAATATGTAGCATTTAAAAAGGAAATCAAGGAAGACATTAATGATGCCCTGGATTTGGCAGCAGATGCCGTGCTCCATGAGGGGCTCAGCCTGCAAAAAGCCGCCGATCGTTATGACATTTCCAAAACCGTATTGTGGCGACGTGTTCGCTCTAATCCAGCCTATATGAGAATTAAACGAGAGAAGCCATCGCTTTCAGAGGCGTACGAGCGTTTAAAAAACGGAGATTCGTTGAAAAGCATTAGCCAAGAACTGAATATACCCATGTCGACACTACATCGGCACAAGGTGCGGCTTGCCGCACAGGGACGTTTACCAGATTTTGTTGCCTGTCGAAAGCGGGACAACACTCCAAAGGACGAGCTGCGGGACAAGCTGGCCAAGGCGGTACATGCCTGTATTAACGGTGGCATGTCACAAAATCATGCAGCTAATCTCTTTGAAATACCCAAGAGCACGCTGTGGCGACATTTGCAGCGCCGTGTAACAGAGGCAgagaaaaaagtcaaagagGAGCAGGAGGAAgacgaagaagaagaaatcCTTAACtag
- Protein Sequence
- MGHSSTIMDIQRILLSQQSTNQSCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPIGQEATIILPDIRGELMESLLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNHTTMTASNVGSGAMAVEAAKSISGLHIANSALLEEEEEEDANAVAGKMEVGNSVLADPQHPQQVQEGRSLEYLDVYSSDQPKISYSIEHMDGTTGESQYILTENTGTFTITQSTGTLTKLGETAGSAVVSAELAEDDADGEDDHDESESQLIEEEFVASSGPLIELNTDADADVDADMTEDAMNEADGGEEEEEDDMLDVKHRKMQLTMKMLNTRERHRATPSKFSKKLITKQHQQYVAFKKEIKEDINDALDLAADAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQELNIPMSTLHRHKVRLAAQGRLPDFVACRKRDNTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAEKKVKEEQEEDEEEEILN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00802960;
- 90% Identity
- iTF_00802960;
- 80% Identity
- iTF_00802960;