Hsem005958.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000029.1:2656413-2672582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.1 2.7e+02 2.7 3.6 1 23 184 207 184 207 0.92 2 14 6 3.2e+02 2.4 1.0 1 19 268 286 268 289 0.91 3 14 0.14 7.5 7.6 0.4 1 23 307 330 307 330 0.96 4 14 0.8 42 5.2 0.4 1 23 393 415 393 415 0.86 5 14 0.045 2.4 9.1 0.6 3 23 1180 1201 1178 1201 0.96 6 14 0.0031 0.17 12.8 1.3 3 23 1208 1228 1207 1228 0.98 7 14 5.3 2.8e+02 2.6 2.1 1 23 1252 1273 1252 1273 0.85 8 14 5.4 2.8e+02 2.6 5.6 2 23 1326 1347 1325 1347 0.94 9 14 0.0032 0.17 12.8 1.1 2 23 1363 1384 1362 1384 0.97 10 14 4.9e-07 2.6e-05 24.7 1.9 1 23 1390 1412 1390 1412 0.99 11 14 0.00013 0.0066 17.2 0.8 2 23 1418 1439 1417 1439 0.96 12 14 0.00031 0.016 16.0 0.6 2 21 1446 1465 1445 1466 0.93 13 14 0.19 9.8 7.2 1.1 1 20 1471 1490 1471 1491 0.95 14 14 0.0041 0.22 12.4 4.3 3 23 1503 1524 1502 1524 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAAATGGCAAGAAAAGGAACCGAAAATCGAAGTTGGTGCCGCGGGATTGCATGGATTCCGACGATGAAAATATCGCAGATATGCAGAAAGAAATTGAAGAGTATTTGGTGCAAATGAAAAATAAGAACATATTGAAGAAATTGAGTAAGCCAACAGAACCAAAACCATTGCAGTTCTCCGTCAAAGTGGAAGTGGAGGAATTCAATGAACAACGCGATgctgaaaaaaatttaagtataaGAATTGATTCTGTATCAAGTCTTTCGGAAACAACAGCTCAGCCTGTCCCTAGCACTAGCAACTCTGAAGTCCCCTATCTAAGGATATCTGATGAAATTCTAAGAATGCAATTTGAGAACCTATCTCGTGTTACAACAAGCCAGGCTGACAAACGGATAGAGATGAATATGAGAAATTTATTAGGAAGAAAAAGGAAAACTCTTCAATGGAACGATGTAGACGAAAAGATACAGAATTTATTACGAAGGAAATGGACAAATTGGCGTAACACATTCCCGCATATTCGCGAGTCACCACTATTGTACAAATGTGACAAATGTAACAAAGCCTGGTGGCATCTGCATGACTTCAGAGAACATCTCCTGACCAAGCATAAAGTCTCCAAAAAAATGACGATTCAATTGCAAACTTCCAGTCACGAATGTTATTTCGTAGCGTACCATGGCCACAAACCGGAAGCGAGAGAAGAAAAGCATCGCGTAAAATCTAACTGTTGGAGATGCGGAAAAGATATTGCATCACATGTGGTATCAGTATGTGAGAAAAGTGCACGATACAGGTGTGTCGGTTGTTTGGAGAAGTTTTATACGTGTACTTTAATGTTTGACCATGAGAGTGTTTGTCCTTTGTACAAACAATTCAAATTACAATCAGCATTATTTAAAGAAATCTATGCATGCACTCTGTGCCCTGCAAAACTTTGCTCTGATACTGATTTGGTGGATCATATGAGATTACGCCACAGCGTGAGGTCCGATCTTCCAACAGATTGGGTGCTCAGGCCGTGCAATGACTGTAACTATCCCATCCATATGCAAGTCTTGCATGAGTGTCCTTTCAAGCCAACTGTGACATCGTGCCAGTTTTGTTTACAAAAATTCACCAGCCCCGTATTATGTATGATGCATATGGATTTAACAAAGGAAAATTACCCGTGTAAGGAATGCGGCTTGGTACTCAGGAGCCAGTGTATGGAACTACTACATATGATGGAGCACACAAAGAACTACATCTTTGCATTCAAATGTTTGCTTTGTACAGACTCATTATATTTCCCCAATTTGAAAACGATTAACAAACATAAATTCACTGCTCACCGAGGACATAATGACAGCAGGAATCATATGAACTCGTACGATACAGTAGTTATTCCTAAAATAATGGCTGCAATTCTACCAGGTTTCGAGCAAGCACAGGGACAAAAGGAATCTGCAACACCTAATAAAAGTTCACCTGGAAAATGTTTCGACAGTGCCTTTGATGGACTTTTAGGTTTCTTGACAaagaataaaatgaaaagaTATCATAAAGTGGGTCGCCCTCctaaaaaacctaaatatcaACACGAAGAAGCTATTGTTGAGATAACTCTGCGTGATAGCTCACAGGATGAAGAAGTTGAAGTGGAAATAGTAGAAAATCCAGAAAAAAATGTTGTCATTGACATTAGTTCTCAAGAAGACGATGAAATCGACTTACAAACATCTGAGggtcaacaaaaaattgacattattGACATAAGAACACCTGATAGTCTGCAAGGAAATGATATAAATATGTATGCTAATTTACAACAACATGACGAAAATAATGTGATTGAAGATAAAAGTCAAAACGAGTACAATGATAACTCAATAGATCATACACAAGAAAATGATAGCGATAATGTTCACATGACTGAACAGCTACAAGGTAGTGAAAACACAAAAGAAATATCAACAGGTAATATCAATAATATTCCACTAACAGAGATCAATCAATTTGATccctatttaattattaaggaAGAAATAACAGATTATAATGACACCATAGATTATACTCAACAAGAAACAGACGCAATCGGTGAAATAAAAATCgaaaatgttatgaaaattaaagAAGAAGCTTTAGACATCGTCcaagaagaagataatattattagcgTAAATAGTAACAAGGATACGAAAAGTTTTAGTAtcaatgaaacattaatagcACCAACGGACAATAGGCAATTGAAAACTGATGCTAAAAATGATAAATTGGCAAATGATATTcaggaattaaaaattaataagaatgATACTTTTAGAGCTAAAATTGATAAAGAGGCAGTAACTGCATGTATAAAACCAGTAAAAACTTATTCTATAATGATAACTACTAATGATAGCGGCAATTTGAAAGATAACTTTGATGTTACTATATCGAGCTCTAATAttgatgataatgataaattaaaaactaaaattgttaCTTTGGGAAATGACGAAAATGACGTCGATAAATCAAAAActaataatgataaatcaaaacTAAGTATTGCTACATTGAAAAATGATGAAAATGCTGTTGATAAATTGAAAACTAATAACGACAAATTAAAAGCAAATACTGTTACATTGAGAAATGATGAAAATGCTGTTGATAAATTGAAAACTAATAACGACAAATTAAAAGCAAATACTGTTACATTGAGAAATGATGAAAATTATGTTGTTCAATTGAAAACTAATAACGACAAATTAAGAGCAAATACTGTTACATTGAGaaatgatgaaaatgatgttGTTCAATTGAAAACTAATAACGACCAATTAAGAGCAAATACTGTTACATTGAGAAATGATGTTGTTCAATTGAAAACTAATAACGACAAATTAAAAGCAAATACTGTTACATTGAGaaatgatgaaaatgatgttGTTCAATTGAAAACTAATAACGACAAATTAAGAGCAAATACTGTTACATTGAGAAATGATGTTGATAAGTTAAAAACGATTAACGCGGGATTAAGAGCTACTCTTTCCGAATTGAGAAACTATTATAAATTAGATGATAATAACGAGAACGAGACTGACAATAAGACCCAACAATTGGACATACAAATTAAAGAAGAAATAGATACTCAAGATTTTTACGATAATTTTGAAGTCGCCGAAGAgataataaatttcaaaatcaaAGAAGAGAATATCGATGAGTTAATTGAACATGATATGATAATATTGGACCCTAGCAACTGCGTCAATGTGAAATATGAAATGGTCCCTAGTTCTACCACATCGATGACGTCAGAGGTTGTGGACCCAAAGACACAGCAGTCAGAAGTTATTGTATGCCATTCATatggtaaaaaATTGTACAGTTGTACCAAATGCAACTTCAAAGGGTTTCACTATCAGTACAAGCAGCACCTTCAGGACGAAGGCCACTTCGCCTCCAAGCGGAAGCACGCGTGCTTGCACCGCACCAAGCCCGTCCACCTCGTCCAGCCCACTGATACCGAGGGCTCGAGCTATGGGTGCACCAGCTGCGGCGTCGTGTATTCGTCCTTCTACAAGTACACCAAGCACTTGAGCAAGGTGCACAATTATCAAAAGCGGGCATGCCCCAAATGTTTGCGGACTTTCCCGAGCATGCAATCACTACAAAGCCACATACACACCCACGTCAAAGAAATCTTTGTCAACATTTATCTCATAAAGAACAAGGAAGAGGACGACAATGAGCTCGTCACTCACCAGTGCAAGACCTGTTCGAAGAAGGTCACAGTTGCAGACTTCTTCACGCATTGGGAGAGTCATTTGGATATTTTGGACAACACAGCGAAGGCACACGCGAGCAAAGGGTTCTCACCATCGGTGGAACACAAGCACGAGTTGAAAAAAATGCTGTTGCTGATTCAAGGCATTCATCCACCAGCGGAAAGCGAGGACGAGTCAAAGTACACCAGATTGAAGTCTTGCCTCAAATGCAAACGAAAATTTGAGCGAAGGAATGAGTGTAAACGACACTACATAGAGCATCTCCTGAGTGACGCGTACCAGGAGCGAGAACAGTACGGGTTCCTGAGATGCCAGATATGCTCTGCCGACTTCTACACCAGCGAGAGATACAAGCGGCACATGCGCGAGCACGCCAGCCTGCCGATCTACAAGTGCGAGCTGTGCGACAAGGCGTTCAGCGACTCCAGCAACTTCACCAAGCACAAGAAGGTGCACAACCTGTCCGTGCTCATCTGCGATATCTGCAAGAAGAAGTTCACCGGGAAGCAGTTCCTCGAAAAGCATATTATGATGCATCAAAAGATCAAGCCGCTCGAGTGTCAGGAGTGCAAAAAGGTCTTCTACACAGAATCCAGCTACCGGAAGCACATCAGCCGCGGGCGCACGCGCTTCAAGTGCCCCTTCTGTCACGTCTTCTTCACCAGCCTTCGGGATAAGTGGGACCATATGTGGGAGATCCACAAAGAGAGGAAGTTCAACGCGGACTGTCCGCTGTGTAAGAAGTCATTCCGCAAACACCAGGATGTGCGGCACCACATCCGCTACGAACATAGAAACCGCGACTTCAAGTACATACCGGACAGAACGATTCTTCCAAACAAGGAAGGCCCCAGGCCGAGACTCAAAGCTGTCGGCAAAAAGCTTGTCGTGCAACCGGAGTGCGAGTGA
- Protein Sequence
- MDENGKKRNRKSKLVPRDCMDSDDENIADMQKEIEEYLVQMKNKNILKKLSKPTEPKPLQFSVKVEVEEFNEQRDAEKNLSIRIDSVSSLSETTAQPVPSTSNSEVPYLRISDEILRMQFENLSRVTTSQADKRIEMNMRNLLGRKRKTLQWNDVDEKIQNLLRRKWTNWRNTFPHIRESPLLYKCDKCNKAWWHLHDFREHLLTKHKVSKKMTIQLQTSSHECYFVAYHGHKPEAREEKHRVKSNCWRCGKDIASHVVSVCEKSARYRCVGCLEKFYTCTLMFDHESVCPLYKQFKLQSALFKEIYACTLCPAKLCSDTDLVDHMRLRHSVRSDLPTDWVLRPCNDCNYPIHMQVLHECPFKPTVTSCQFCLQKFTSPVLCMMHMDLTKENYPCKECGLVLRSQCMELLHMMEHTKNYIFAFKCLLCTDSLYFPNLKTINKHKFTAHRGHNDSRNHMNSYDTVVIPKIMAAILPGFEQAQGQKESATPNKSSPGKCFDSAFDGLLGFLTKNKMKRYHKVGRPPKKPKYQHEEAIVEITLRDSSQDEEVEVEIVENPEKNVVIDISSQEDDEIDLQTSEGQQKIDIIDIRTPDSLQGNDINMYANLQQHDENNVIEDKSQNEYNDNSIDHTQENDSDNVHMTEQLQGSENTKEISTGNINNIPLTEINQFDPYLIIKEEITDYNDTIDYTQQETDAIGEIKIENVMKIKEEALDIVQEEDNIISVNSNKDTKSFSINETLIAPTDNRQLKTDAKNDKLANDIQELKINKNDTFRAKIDKEAVTACIKPVKTYSIMITTNDSGNLKDNFDVTISSSNIDDNDKLKTKIVTLGNDENDVDKSKTNNDKSKLSIATLKNDENAVDKLKTNNDKLKANTVTLRNDENAVDKLKTNNDKLKANTVTLRNDENYVVQLKTNNDKLRANTVTLRNDENDVVQLKTNNDQLRANTVTLRNDVVQLKTNNDKLKANTVTLRNDENDVVQLKTNNDKLRANTVTLRNDVDKLKTINAGLRATLSELRNYYKLDDNNENETDNKTQQLDIQIKEEIDTQDFYDNFEVAEEIINFKIKEENIDELIEHDMIILDPSNCVNVKYEMVPSSTTSMTSEVVDPKTQQSEVIVCHSYGKKLYSCTKCNFKGFHYQYKQHLQDEGHFASKRKHACLHRTKPVHLVQPTDTEGSSYGCTSCGVVYSSFYKYTKHLSKVHNYQKRACPKCLRTFPSMQSLQSHIHTHVKEIFVNIYLIKNKEEDDNELVTHQCKTCSKKVTVADFFTHWESHLDILDNTAKAHASKGFSPSVEHKHELKKMLLLIQGIHPPAESEDESKYTRLKSCLKCKRKFERRNECKRHYIEHLLSDAYQEREQYGFLRCQICSADFYTSERYKRHMREHASLPIYKCELCDKAFSDSSNFTKHKKVHNLSVLICDICKKKFTGKQFLEKHIMMHQKIKPLECQECKKVFYTESSYRKHISRGRTRFKCPFCHVFFTSLRDKWDHMWEIHKERKFNADCPLCKKSFRKHQDVRHHIRYEHRNRDFKYIPDRTILPNKEGPRPRLKAVGKKLVVQPECE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -