Hsem011872.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000168.1:680571-688116[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.51 27 5.8 0.0 2 23 206 227 205 227 0.96 2 12 1.2e-05 0.00065 20.3 2.7 1 23 233 256 233 256 0.95 3 12 7.4 3.9e+02 2.2 0.5 1 7 271 277 271 293 0.74 4 12 0.00023 0.012 16.3 4.2 1 23 523 545 523 545 0.98 5 12 0.043 2.3 9.2 1.9 2 23 551 573 550 573 0.96 6 12 0.0031 0.17 12.8 0.8 2 23 582 603 581 603 0.97 7 12 0.0074 0.39 11.6 2.8 2 23 607 628 606 628 0.97 8 12 0.027 1.4 9.8 2.0 2 23 642 664 641 664 0.96 9 12 0.00075 0.04 14.7 0.9 3 23 672 692 670 692 0.97 10 12 0.14 7.4 7.6 4.0 3 23 700 720 699 720 0.96 11 12 0.003 0.16 12.8 4.2 1 23 726 749 726 749 0.97 12 12 0.37 20 6.2 0.2 1 23 753 776 753 776 0.96
Sequence Information
- Coding Sequence
- ATGAACCACAAAcccgaaaaaataaaagagtctAAAACATTCTCGAGGCTTGTTAACACAACGAATAAAGTTAGTGATCACGAAAAGAAGCAAGACGATTTAAAAGTGCCTTTAAGTACCAAGAACGCTGTTGAATATCTTCTACAAGGGACTCTGAGCCTAAGAGTTTGTAGGTACTGCTTGAACGTCACGAATAAATTGTCTGAATTTGACGAGATTCTAACATTGGCGGTTAGCGGCGCCTTGCACGAGGTTACTATACGTGATATAGTTGCAAGCTTTCACCCTTATAAGATTGCAGACGACCCAAACTTTCCGAATAAAATATGTAACGAATGTGTAAACAGAGCAATAAGTTGCTATTTATTCACTCAACAATGTGATAGAGCAGAAAGAGCTTTACGAAACTGTTTTGATGATATATATGAAAAACATGCAAAACTAGATCCTGTAGAACCGGTTAAGAAAAGAGGAAAACGAAAACTTTGTCCAAATCATAACTTTATTTATGTCGAACACGACAATGTTATTGATTATGCTGAACCTGTCATAAATATTGTTAATGTAACAAATAATTGTTCAGTTGAGTGCAGCAACAATAAAATGAGTGAACTTGAATGCCAAAAATGCTGGCAGATCCTACCTAACGTAGAATCATTAGTTAATCACGAGAATTCCCATCCAAAAAGCATGTGGTTTAATTGTAGATTATGTGGCAAATCGTTTGTTAAACGTTCCCAATTACGAAAACATACCAAAGAAACACACATGTACATGCAAGAGGATTCGGGAGAAATTAAAATAGATGATTTCAGATGCAACGAATGTGGCTCAACCAATAAAACTCTGGGAGAACATTTGCAGCATAACGAAAAGCATAAATTCAAGTCATTGTTGGAATGCTTGGTTGAACGGAAAGTTGGTTCGTTGTGTACGGTTTGCTTGGATAAAAGTTCCCGTTTGATAAGTTTGGATGATGTTGTTCATCTTCATGGAGGTTATTCTGGATTGACTGGGACTAAGAGAGTGAACAATATTTTAACTGCTACTATGCCAGGCATTCAATTTGATACGTACACGGGAACAAAAATATGCGATAAATGTTACAACCACGCTATATCTTCTTACATATTCATAGCCAAAATACACCACGTTCGTAATCGGTTAAATTCTTGTGTTAGTGGTATGCTAGACAGACTCAGTACTGTAGatgttactaataataatttaatggtaGAAATATCGCAGGATACCATACTGCCGATGATTCAACTAgatgaaattaatgaaataaaacatgacGACGATGATGATTTAAAAGTTGAGATTTTAGAAGATGAATTTAGAATATCTGACTCTGATGGTGCTGAAAGTGATATTACAAATGATTTCGATGATAAACCTTTATATAACCTGGCTAAAAATACAACGAAAACTTATAGTAAGAAGAAGTTATTTAACGGTTATCAAAAGGACAGTGAGGACAGCATATTTAGAGACGTTTGTAGCGAATTCTTAACATTTAGAAAAAAGGTCCATAGACCAACATGCACACCCAAATGTAGATATACATGCCCGTTTTGCAATAAACATTTCATTTCGGATTACTTCCttaaaaaacacattttaaaacacGTTCAAAGAAAAGTACAATGCAATATATGTCTAAGTAATTTTAAATCGAAATTCTATCTTTTTGAACATAAGAAAATGAACCATGTACTGAAACTAAACAAATTTATTACCTGCAAAGTTTGTGGTAGAACATTTGTCGGTATGAAAAAGATTAAATCGCATCTGAAAAGTCACACAATAAAAGAATGTCAACTGTGTGACAAATTGTTCATGTCCCAAAAACATTATGACGTCCATATGCAGCGACATGCTGTTAAATTCAAGTCTTACAAGAACAGACATGTTCAAACTTGTAGTTTCTGCGAGAAGGCGTGTTCGAACGAAAACGAGCTCTCCTTACATGTAAATAAGACGCATCTTCAAATAAAGCCTTACGGATGTGACATGTGCGACAAGCAATTTTACACTGAAACCAATCTGTTAAGTCATAAAAAGTTACACAGTTTGTTTTCAAAAGAATCCTGCGCATTTTGTAGTAAATCTTTCAAATGCCGTAAGAGTCTTGTCGTCCACGTCAGAAAGCATATAGGTATAAAACCTCATGTTTGTCCTGTTTGCAAACAATCATTTTATTCTGACTTGCATATGAAGAAACATATGAAGGTTTTCCATGGTGGAATATATTCTTGCAGGCTCTGTAGATCGGTGCTGCCTAGTCAACTTGAACTCAAATCACATATTAATCTAATGCACAGCTCTATGTAG
- Protein Sequence
- MNHKPEKIKESKTFSRLVNTTNKVSDHEKKQDDLKVPLSTKNAVEYLLQGTLSLRVCRYCLNVTNKLSEFDEILTLAVSGALHEVTIRDIVASFHPYKIADDPNFPNKICNECVNRAISCYLFTQQCDRAERALRNCFDDIYEKHAKLDPVEPVKKRGKRKLCPNHNFIYVEHDNVIDYAEPVINIVNVTNNCSVECSNNKMSELECQKCWQILPNVESLVNHENSHPKSMWFNCRLCGKSFVKRSQLRKHTKETHMYMQEDSGEIKIDDFRCNECGSTNKTLGEHLQHNEKHKFKSLLECLVERKVGSLCTVCLDKSSRLISLDDVVHLHGGYSGLTGTKRVNNILTATMPGIQFDTYTGTKICDKCYNHAISSYIFIAKIHHVRNRLNSCVSGMLDRLSTVDVTNNNLMVEISQDTILPMIQLDEINEIKHDDDDDLKVEILEDEFRISDSDGAESDITNDFDDKPLYNLAKNTTKTYSKKKLFNGYQKDSEDSIFRDVCSEFLTFRKKVHRPTCTPKCRYTCPFCNKHFISDYFLKKHILKHVQRKVQCNICLSNFKSKFYLFEHKKMNHVLKLNKFITCKVCGRTFVGMKKIKSHLKSHTIKECQLCDKLFMSQKHYDVHMQRHAVKFKSYKNRHVQTCSFCEKACSNENELSLHVNKTHLQIKPYGCDMCDKQFYTETNLLSHKKLHSLFSKESCAFCSKSFKCRKSLVVHVRKHIGIKPHVCPVCKQSFYSDLHMKKHMKVFHGGIYSCRLCRSVLPSQLELKSHINLMHSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092433;
- 90% Identity
- -
- 80% Identity
- -