Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000178.1:2773683-2783215[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.065 3.4 8.6 2.0 1 23 379 401 379 401 0.97

2 10 0.011 0.59 11.0 0.4 2 23 409 431 408 431 0.95

3 10 0.5 26 5.8 0.3 1 23 435 457 435 457 0.96

4 10 0.00031 0.016 15.9 0.2 1 23 462 485 462 485 0.98

5 10 0.059 3.1 8.8 2.4 2 23 490 512 489 512 0.95

6 10 0.12 6.5 7.8 2.0 2 23 577 599 576 599 0.96

7 10 1.5e-05 0.00081 20.0 1.9 3 23 614 634 613 634 0.99

8 10 9.7e-06 0.00052 20.7 0.6 1 23 640 662 640 662 0.99

9 10 0.0011 0.056 14.3 1.7 1 20 669 688 669 691 0.89

10 10 0.00044 0.023 15.4 0.5 1 23 697 720 697 720 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.065	3.4	8.6	2.0	1	23	379	401	379	401	0.97
2	10	0.011	0.59	11.0	0.4	2	23	409	431	408	431	0.95
3	10	0.5	26	5.8	0.3	1	23	435	457	435	457	0.96
4	10	0.00031	0.016	15.9	0.2	1	23	462	485	462	485	0.98
5	10	0.059	3.1	8.8	2.4	2	23	490	512	489	512	0.95
6	10	0.12	6.5	7.8	2.0	2	23	577	599	576	599	0.96
7	10	1.5e-05	0.00081	20.0	1.9	3	23	614	634	613	634	0.99
8	10	9.7e-06	0.00052	20.7	0.6	1	23	640	662	640	662	0.99
9	10	0.0011	0.056	14.3	1.7	1	20	669	688	669	691	0.89
10	10	0.00044	0.023	15.4	0.5	1	23	697	720	697	720	0.95

Sequence Information

Coding Sequence: ATGCGCCCACGACGCAGATACCGACGAAGAACACCGAAGTCAACAATGATGTTATCATCATTGGACACATCAAGATCATCATCACGCACAAGTTCCGCTTCAGAATTCCGGTCGCCGTCGCCAGAGGCAATTATACACACTGAGTTCTGCATGGTGTGTCTGAACACGAGCGAGGACTGCAGGCTGTATGCCTCCAACACATACAACCTGGACAAGGAGTTCGAATATTTGACTGGAATATCACTGGAAGGCCCAACCCACTTTGAGGCTCAGTTCTGTGAGGAGTGTGCTCAAAGGCTGAGAAAATGCAGCAAGTTCCGCTACAAGAGTCTCACAGCCTACCAGAGAATGATGGAATTGGTTGAACTGGACAAACCGCTAACAATACAGAATATTAAAAGTATGTGCAGATCTAACAATCTTACGCCAAGTATGTCCAAGAAATCATTCCAACCAGACTACTGCGACCTAAATCTGATTCATGAAGAACTACAAGAGCAAGAAAAATTACAGCAAGAATTAGCAACGAATAAAGTACTACAAGATGTACCAAACAAGGAACTAGTACATAAACAAGAAGACTTACTTCACGTTGAaccaataaaaattgaaattaaattatttaatggtGAACTTATACTGATTCCTATACCAGAAAAAGAGAATAAAGTTGAAtctaaaagtttggatgttatACTCAATCCTATACCAGAAGTTGAAAATAAAGATGCACCTAAAAGTTTGGATGATTCCCATGATGATTTTGATATAAACATAGATTATATAGACGATGACAACTACAGCGATATTGATACACAGTGTGACAAAAGAACCAAAAACACGGTCGACAAGTTTATGAATGATGTAATGAACACGGACAACGACTGTGTCGTTTTGAAGGATAGCGACTGTGATAATGATTCGGTATCTGCTATAAAAactgaaattaaaattgaaaaagaacATATCAGTGAACCAAAACCTACAGCTCGAAAACGaaaaaaggtaaataaaaagATGAAAAAAGGTACATTGGAGTGCTTAGAATATTTTGATGTGACTACGTTGACTCGTGAGGAGCAATTGGAGGATATACAAAAGAGAAAAGAGAAACCAAGTTATATAAATGGAAAATTCAAATGCAACATATGTTTCAAAGGCTTCTTGAATGTCTTCACGTACAAAGAACACATGGATCGACACACTGATaaatatGGAACAAGTGTATGCCCAATATGCGGCCTGCATTCCCGCTCAGAGTTGGCCTTGCGTGACCACATGACCAAAAGCCACAGATCGCGCTACAGCTGCCGGCGCTGCTCGTTCGTCACCAGAAACCCGGGCACGGTGGTCAATCACGCAAAGTGGCACGCGGGCACCGTGTACCAGTGCCCACATTGCCCCGAGGTGTCTATCACCAAGACCGCGTGGTTGTCCCACATACGGATATTCCACCCCACGGACGTGGTGTGCGCGCTGTGCGGCTTCTGCTTCCTGAGCAAGCACGGGCTTCGAAAGCACGTGCTCATGAAGCACCGATTGGAGAACGCGCAGAACCCCTCGGGCCCGCTGTGCGAGGCGTGCGACGTGCGCTTCGCGTCCGAGGCGGCGCACCAGCAGCACCTGAAGGTCTCGCCCAAGCACGCCGCGGGACGGAAATTGGCGCGCAACGTCCCGCTCCCCAAGGGCTACAAAAAACGGATATCCAAAACTACCAATGAGCCCATTACGTGCGAACAGTGTGGCTTACGGCTGAAGAACTACAGGTCGTACTACCACCACTTCCGGATCGAACACCCAGAACAGGCGCGCACGCAGCTCCCGCATACGGCGTTGTTGTGCGAGCTGTGCGGGCGCGCTTTCGGGACACGGGCTCACCTACAGAAGCACAAGCGGACGCACACGGGCTCCCGACCGTACCAGTGCGACACGTGCAGCCGCGCCTTCTACACCAAGGAAAACCTCGCGCTGCACGTGCAGACGCACGACGCCAGCCGCCACACGCACGCGTGCCCCGTATGCGGGAAGCATTTCACCAACAAAGCGAACCGCGACCGGCACGTCTGGACACACAAGAAGCACAAGCCGTACCCGTGCGACGAGTGCAACAGGACGTTCGCGGACAACTCGGCGCGGCGCGAGCACGTGCAGCACGTGCACCGCCGCCGCCCCTACCCGCGCAGGGCCCGCGGCCCGCCGCAGCGCAACAGCCGCCCGCGCGGCGCGCTGCTTGCCGTGTTCGGCGCCGCCCGGGTGGAACAACCTGCTCCAGTCGTCGAGATGCTTgaagattaa
Protein Sequence: MRPRRRYRRRTPKSTMMLSSLDTSRSSSRTSSASEFRSPSPEAIIHTEFCMVCLNTSEDCRLYASNTYNLDKEFEYLTGISLEGPTHFEAQFCEECAQRLRKCSKFRYKSLTAYQRMMELVELDKPLTIQNIKSMCRSNNLTPSMSKKSFQPDYCDLNLIHEELQEQEKLQQELATNKVLQDVPNKELVHKQEDLLHVEPIKIEIKLFNGELILIPIPEKENKVESKSLDVILNPIPEVENKDAPKSLDDSHDDFDINIDYIDDDNYSDIDTQCDKRTKNTVDKFMNDVMNTDNDCVVLKDSDCDNDSVSAIKTEIKIEKEHISEPKPTARKRKKVNKKMKKGTLECLEYFDVTTLTREEQLEDIQKRKEKPSYINGKFKCNICFKGFLNVFTYKEHMDRHTDKYGTSVCPICGLHSRSELALRDHMTKSHRSRYSCRRCSFVTRNPGTVVNHAKWHAGTVYQCPHCPEVSITKTAWLSHIRIFHPTDVVCALCGFCFLSKHGLRKHVLMKHRLENAQNPSGPLCEACDVRFASEAAHQQHLKVSPKHAAGRKLARNVPLPKGYKKRISKTTNEPITCEQCGLRLKNYRSYYHHFRIEHPEQARTQLPHTALLCELCGRAFGTRAHLQKHKRTHTGSRPYQCDTCSRAFYTKENLALHVQTHDASRHTHACPVCGKHFTNKANRDRHVWTHKKHKPYPCDECNRTFADNSARREHVQHVHRRRPYPRRARGPPQRNSRPRGALLAVFGAARVEQPAPVVEMLED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -