Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000172.1:7630503-7643139[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-05 0.00086 20.0 0.9 1 23 253 275 253 275 0.99

2 12 0.03 1.6 9.7 2.2 1 23 283 306 283 306 0.91

3 12 0.12 6.4 7.8 9.0 1 23 407 429 407 429 0.99

4 12 0.27 14 6.7 1.4 2 23 438 460 437 460 0.95

5 12 1.6 87 4.2 5.8 1 23 464 486 464 486 0.97

6 12 0.0056 0.3 12.0 1.2 1 23 491 514 491 514 0.97

7 12 0.22 12 7.0 2.4 1 23 518 541 518 541 0.88

8 12 0.21 11 7.0 0.1 2 19 560 577 559 580 0.91

9 12 1.6 87 4.2 0.1 3 23 623 644 621 644 0.90

10 12 2.1e-06 0.00011 22.8 1.3 1 23 653 675 653 675 0.98

11 12 0.00047 0.025 15.4 0.7 1 23 681 703 681 703 0.96

12 12 6.1e-06 0.00032 21.3 2.6 1 23 709 732 709 732 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-05	0.00086	20.0	0.9	1	23	253	275	253	275	0.99
2	12	0.03	1.6	9.7	2.2	1	23	283	306	283	306	0.91
3	12	0.12	6.4	7.8	9.0	1	23	407	429	407	429	0.99
4	12	0.27	14	6.7	1.4	2	23	438	460	437	460	0.95
5	12	1.6	87	4.2	5.8	1	23	464	486	464	486	0.97
6	12	0.0056	0.3	12.0	1.2	1	23	491	514	491	514	0.97
7	12	0.22	12	7.0	2.4	1	23	518	541	518	541	0.88
8	12	0.21	11	7.0	0.1	2	19	560	577	559	580	0.91
9	12	1.6	87	4.2	0.1	3	23	623	644	621	644	0.90
10	12	2.1e-06	0.00011	22.8	1.3	1	23	653	675	653	675	0.98
11	12	0.00047	0.025	15.4	0.7	1	23	681	703	681	703	0.96
12	12	6.1e-06	0.00032	21.3	2.6	1	23	709	732	709	732	0.98

Sequence Information

Coding Sequence: ATGTTTGACCTCAAAATGTGTACGGTATGCTTGCAAATGGATGTAAAATGTTATAGCATGAATGCGAACAGCGGACAACTGAGAAAGGATTTCAATACGATATCTGGTTTACAGAGTCGCAATGGCAATGGCTTGCCCGAGTACTTGTGTTATCAGTGTACGGCGTACGTGCAGAGCTGCAAAAGGTTTCGTGACAAATGTCAAAGGGCATACTTTGTCTTACAAGAAATACTGCAAAGAAATAAAGAGATAACAAAGTCTATAATCGAAGAATTAGACTGTCACACATTAAGAATAGGTCCAAATCTATCATTTCTCGACAAAGACAGTGTGAAAACAAAATATGATAACGTAAAATTCAAATGGATTAAACCAGCTCGAATGAGTCTTGAACCTCAGAAAGACATACCGGTGATTCAATACGGACCTCAGTCGGATCAAACCATCTTTGAACAAGCAACACAGAAACTTGAAACAAGCATTAAAGATGAAGACGACTGTGTAGATAAAACCAAAGAATCTGATACGGAATTAAATGAAACAGTTAATATGAATGTATTCGATGAAAACTTTGAGTGTCACGACGATCAGGATTATGAcgttgatattgatattgatgtTAATGCAACCGAACCGAAACTTGACACCGATGTTGACGGTTCGACGTTGAATGAGGAGTATGCAAAAATGGTCCCTATTAGTACGAATGAAGCGAGTGCGGCGGTTGAGATTTGTAGAATGGCTACACAAGGCAAATATGTGTGCAGTGTTTGTCAGAGGTCGTACACTTCGACAGGACGGCTTAAAGTACATATGAGGATGCATGATAAGCATACAAGTGGAATGTTTTTGTGTACGTTGTGCAATTACTACTATAAGACTGAGTTCCTGCTAAAAACTCATATGACTGACAAACATATGTACAAGTATCTATGCAGAAAGTGTCCGCACGTCTCCTTTGCCAGAACAGCTGCGAAACGCCATTACATGTGGAACCACATACAGAAGAAGAGGCCAGCCTCCCATCTGAAATCCAGGCCGAAGTGGTTACGCACCAAAACGGTCAAAAAGGTTcaaacacacacacccacatcAAAAAAACCGACCAAAATAACCAGATTACCCGTAGATTGTCTAACTTACACCCCCGTAAGCCAAGAAGAACAGTACGCATTGGTCAGAGAAAGGAAGTTCACTAAAAATTATGCGGAATCCGTTTACAAATGCGAACACTGTTTCAAAGGGTTCCGGTGTTCTATGACCTACACCAAGCATATGCAGAAACATGACCCTGAAATTTCGGGTAATCTACAGTGTGACATGTGCAAGATATACTGTCCGGACGCGCGCAAGATGTACAAGCACATGAGCATCACGCACCTGTACAAGTACACCTGCAAGATGTGCTCCTATATCTGCTTCAACAAgGGTCAAGCAAAAATGCATCATAAATGGCACCAGAATATCACATACCCGTGTCCACACTGCGACCTAGAATTCTAtaaaatCTCCACGAAGCTGACCCACATCCGCATCAAGCACCCGTCGATGTTCATCTGCAACTTGTGCGGACACAGCTTCGTCAGCGAGAACGGGCTCTACTGCCACCGGAAGCTGGCGCACAGCAAGCAGGAGGTGGAGGACGGCAGCGGCGCAGTGGACCCGAACGACCCGCTGTACTGCTCAGAGTGCGGGATTCAGTTCCGCGACGATGCCGCCTTCGCGACCCACTTCGGCTCGTCCAACAAGCATGCCGACACCAACCTGTCGATAAAGCCGGTGCGGGCGCGGAGCGAGCGCACGCGCGGGCGGCCGCGGCGCGACAACACCGACATCGTGAACAACGGTGTACCCACTTCCTCCAACTGCGAGATCTGTCAGAAGCTCCTGACGTCGGACTCGGCAGCACGGCGCCACTACGAGGCGGAGCATCCTGGCGTGGACTTCCTCAAGCGGTACATGTGCGACATCTGTGGCCACACCACCAAGCAATACGCGAACCTGATGGtgcacatgcgcacgcacacgcaGGAGAAGCCGTACGCGTGCCCGCACTGCGAGCGGCGCTTCAGCATGCCCAGCAACCGGGACCGCCATCTGGTGGTGCACACAGGGGAAAAGCGCTACCAGTGTCAGCACTGCAACCGACGCTTCACGCAAAGCAGTGCGGTCAAGTTACACATACAAACTGTCCACTTGAAGATTCCATACGCGCCCTGGGATAAGAAGAACCGCAAGCGGCGCCGGGACGCGACCGAGGTAGCGCCGCTGCCGCCGGCACCGCCCACGCAGAAGATCATCATTGACTCTGGAAACTATCTCAGTGCTTACATCACTTATAACGAGTGA
Protein Sequence: MFDLKMCTVCLQMDVKCYSMNANSGQLRKDFNTISGLQSRNGNGLPEYLCYQCTAYVQSCKRFRDKCQRAYFVLQEILQRNKEITKSIIEELDCHTLRIGPNLSFLDKDSVKTKYDNVKFKWIKPARMSLEPQKDIPVIQYGPQSDQTIFEQATQKLETSIKDEDDCVDKTKESDTELNETVNMNVFDENFECHDDQDYDVDIDIDVNATEPKLDTDVDGSTLNEEYAKMVPISTNEASAAVEICRMATQGKYVCSVCQRSYTSTGRLKVHMRMHDKHTSGMFLCTLCNYYYKTEFLLKTHMTDKHMYKYLCRKCPHVSFARTAAKRHYMWNHIQKKRPASHLKSRPKWLRTKTVKKVQTHTPTSKKPTKITRLPVDCLTYTPVSQEEQYALVRERKFTKNYAESVYKCEHCFKGFRCSMTYTKHMQKHDPEISGNLQCDMCKIYCPDARKMYKHMSITHLYKYTCKMCSYICFNKGQAKMHHKWHQNITYPCPHCDLEFYKISTKLTHIRIKHPSMFICNLCGHSFVSENGLYCHRKLAHSKQEVEDGSGAVDPNDPLYCSECGIQFRDDAAFATHFGSSNKHADTNLSIKPVRARSERTRGRPRRDNTDIVNNGVPTSSNCEICQKLLTSDSAARRHYEAEHPGVDFLKRYMCDICGHTTKQYANLMVHMRTHTQEKPYACPHCERRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRRDATEVAPLPPAPPTQKIIIDSGNYLSAYITYNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092486;
90% Identity: -
80% Identity: -