Hsem016498.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:983532-985250[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 1.2 10.0 1.7 3 23 70 91 68 91 0.95 2 10 0.012 0.62 11.0 0.2 2 23 117 138 116 138 0.96 3 10 0.011 0.58 11.1 1.2 2 23 161 182 160 182 0.97 4 10 0.012 0.65 10.9 0.1 2 23 187 209 187 209 0.89 5 10 0.17 9.2 7.3 1.0 1 23 214 237 214 237 0.89 6 10 0.0009 0.047 14.5 4.4 2 23 245 267 244 267 0.96 7 10 0.0053 0.28 12.1 2.0 1 23 274 297 274 297 0.98 8 10 0.0038 0.2 12.5 5.5 1 23 303 325 303 325 0.99 9 10 8.9e-06 0.00047 20.8 1.4 1 23 331 353 331 353 0.99 10 10 4.9e-06 0.00026 21.6 2.7 1 23 359 382 359 382 0.98
Sequence Information
- Coding Sequence
- ATGTCCAAAAGGGATTTTATTCAAGTCACTTGCCTTAATTTAGGCTCATTTCTGACAAATCCCGGGAAGTCAAAAACGAtgcagaagaagaagatatcGAACAACCCCAAGAAACGCGAAAGAAGCAAACATATGGATAACATAACCACCCTGTTCAATCACACAAACGCCACACCCTTACGCTGTCAGAAAGACATCGGATATGGATGTTGCTTTTGCGaaaagttttatgaaaaacCGGCCGAATTAAAAGAGCATACCAGACAAAGTCATCAATCAGATATAAAAAACATAATGAGGAAGAAATCACTAAACGATTATCATGTCAAACTTGATATAACTGACTTACAATGCAACGAATGCAATACCAAAATAGATAATTTAGAGGACATGATGCGTCACCTGCAGGAACACAACAAAAGTATCCATTGGGACATAAATAATCATATAATGCCTTTTAGTTTTGAAGATGACGAACTACGGTGCGTCATCTGTAAAGCGGAATTCAACAAATTTAAGAAACTGAATGAACACTTGAACAAGCATTACAGAAATCGAGTTTGCGACGTCTGCGGCGCAGGTTTCATCAACGAGAGAACCTTTCGGAAACATTCGATTCAAGTTCACAAAAAAGGCGTTTTTGCTTGCAAATTCTGTCAAAAAATATTCGATACGATCGGGAAGAAGAGATCCCACGAATCATCCGTACATATACACTCGCAGATGTTGAACAAATGCGGATATTGCAACAAGAAGTTTAAATCCCATAGGAATAAAGAGAAACATATTTCGAGCGTGCACGGGGTACGTCTTAAGGAGTACAAATGCAAACTGTGCAGCAAGGCCTGTTTGACTGCGAACGCTTTGCGGGTACACACGCGGCGTGACCATTTGAAAGAACGGAATTACCAATGCCACTTGTGCGATTTTTCGTCTTACGGGAATAGTTGTTTGAGGAGTCACATGCTGAAACATACGGGGATCAGGGATTACCAGTGCGATATTTGCCTGAAGACGTACGGGAAGAAGAAGACGTTAAAGGAACATATGCGTATACATGCGGACGACAGGCGGTTCAAATGCGAGTACTGCGGACTGGCGTTTATACAGAAATGTAGCTTGAAGGGACATATGCGGTCCAAACACAGAGATTTGGTGCCCTCAGTGTAG
- Protein Sequence
- MSKRDFIQVTCLNLGSFLTNPGKSKTMQKKKISNNPKKRERSKHMDNITTLFNHTNATPLRCQKDIGYGCCFCEKFYEKPAELKEHTRQSHQSDIKNIMRKKSLNDYHVKLDITDLQCNECNTKIDNLEDMMRHLQEHNKSIHWDINNHIMPFSFEDDELRCVICKAEFNKFKKLNEHLNKHYRNRVCDVCGAGFINERTFRKHSIQVHKKGVFACKFCQKIFDTIGKKRSHESSVHIHSQMLNKCGYCNKKFKSHRNKEKHISSVHGVRLKEYKCKLCSKACLTANALRVHTRRDHLKERNYQCHLCDFSSYGNSCLRSHMLKHTGIRDYQCDICLKTYGKKKTLKEHMRIHADDRRFKCEYCGLAFIQKCSLKGHMRSKHRDLVPSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151507;
- 90% Identity
- iTF_01092423;
- 80% Identity
- -