Hsem004956.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000024.1:5753772-5763295[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.049 2.6 9.0 0.6 1 23 413 435 413 435 0.97 2 9 0.00051 0.027 15.3 2.2 1 23 442 465 442 465 0.95 3 9 0.00079 0.042 14.6 0.3 1 23 496 519 496 519 0.98 4 9 0.0038 0.2 12.5 0.2 1 23 523 546 523 546 0.97 5 9 0.23 12 6.9 0.1 3 23 623 644 622 644 0.96 6 9 0.00025 0.013 16.2 0.1 3 20 659 676 658 679 0.93 7 9 0.0016 0.086 13.7 0.5 1 23 685 707 685 707 0.95 8 9 3.7e-06 0.00019 22.0 1.2 1 23 714 736 714 736 0.97 9 9 0.0015 0.078 13.8 0.5 1 23 741 764 741 764 0.92
Sequence Information
- Coding Sequence
- ATGAGGTGTTGCCTCTCTTTCTGCAATAATTCAAGAGATAATCATTCCTCGACAACATCCACTGGACCGCAGAAAATTACTTTTCATAATTTCCCAACTACACCGTATCTAAGGTCATGCTGGCTGGCAGCACTGGATGTAGAAGAGAGCCAATTGCCAGATGTGCCACTTGTCTGCTCCCAACATTTTCAACAAGATGACTTTTACGTGAATAAAGATGGGTTTATTCACCTGAGAAGTAATGCAGTTCCTTCTACAGTGCAGGTGTGCAGGATATGCTTAGATACTGCCAGTGAACTGTATCCACTGGGCAAGTTTAATTTGGAAGAGGCTTATTTTAACGTTACTGGGATATCTgtGTGCAATGATTTGAACATTGCACTGAAACTGTGTGCAGAATGTGCTCAAAGATTGATAAACTGCCACACATTCAAGGACAAGAGTTTACGAGCCCATGCTCTGCTACTGGAGTTGGTCTATAAGCATGGTTTTttaacAACACAAAAGGTGAAGTCGATAAACCGAGAGAGCCATCAACTAATGTCTAACATAGTTAAGAAGGTATTCCAGCCGGACCACTGTGACCTCTACTTACTAGATGACAAAGAGGAGAATGTGTACCATGTACCAGTGGTCAAGGATGAAGAGGAAATTAGAACTGATGATATCTTTAACTCATCGAAACATATTAATAGTGCCAATAATAGAGATTTAgAGCCAAAACAAGAGAATTTAAATTGTGAAATTAAAAACGACGatgatttttcaaatgtcaatGATGCGAAATTCCTAAACAGTAGTGACTTCAACTATGTAGGAGTTATAAGCAATGACTTTGACGGTGGCGTAGACATCTCTAACAGTGATGCAGACAGCAAACCTGATATACCGAAGGTTGATGTGGGAGCTGTAAGAAAAAGAAAGGTTGATAAAGGCTCTAGGAAAAGGATCAGTAGTAAAAAATCTGTAAAAAGGGTTAAagGTACCCTAAAAAGGATTAATAATAGAACTAAAGTTAAATCAAGTAAAGAGCGTTCAGCGgccaaagtaaaattaaaaaatggtaTACTCAAACTGAAGAAGGAAAGGAAAAAGTCCGCTAAGCCGAAAGTAGAGAGTAAGCCGAAACCTGTCCCAGATGAAAAGAAGTTATTTAAGAAAACTGTACTAACATATGAGGAACAATTAGCAGATGTTCAACAAAGGAAGGAAACTGCCAACTATTTGAACGCACGCTATAAATGTACCAAGTGTTATAAAGGGTTTTTAGACGTAGATGCCTATAATGGTCACATGATTAAACACACTAATaaatatGGACCTTTTGAATGCGACATATGCGGTCTCCACAGCAAAAGCCGTAACAATCTGTGTCGACATATAGTTGTTAATCACAGTATTAGATACAGCTGTACTCTCTGTCTGTTTGTCACCATGCACGTaGGAACGGCAAAGTCTCACGAGCGTTGGCACAATGGAAGCAAATTTAAATGTCCCGAATGCGATCTAGAATTTGGCATAAGGTCGTCGTATTTGTCACATCTTCGCATAAAGCACCCTTCAGACTACGCGTGCACGATCTGCGGGTTCTCCTTCATCGGGGAGAGGGGCATCAAGCTCCACATGAACAAGAAACATCGCTTCGATGTCGAGAACCCCGAGGGCCCGCTGTGCAAGCCGTGCAACATCCGCTTCGCGTCCGACACGGCGTACAACCAGCACGTGAAGGTGTCGCCCCGGCACAACATCGGCGGGAAGCGCGTGCGCAACGACCCGCTGATCAACACCATCTGCTGGCGCAAGCGGCCCTGGAGCGGCAAGTCCAAGAAGGAGGACCCCGACGCCGCCGACGGCGAGCCCGTCGACTGCGAGCAGTGCGGCATCCCGCTGAAGGACTACTGGGCGTACACGCAGCACTTCAAGAAGGCGCACCCCGACAAGAACCGCACCAAGTACCACCGCCCCAAGCTGCTGTGCGAGCTGTGCGGGAAGGTGTTCAACAACGAGGCGCAGCTCCGCTACCACATGCCGGTGCACTCGGAGCACAAGCAGTTCAAGTGCGAGGTGTGCAGCAAGAGCTTCGGCTCCATCCTCAACCTCAAGAGCCACGCCACCCTGCACAGCGCGACGCGCCCCTCCTACGCCTGCGACTACTGCGGCAAGACCTTCGCCTACCAGTCCAACAAGTACCGCCACATGACGATACACAAAGGCATCAAATTCAGTTGCGAGATTTGCGACAAAAGCTTCAACACGGCCCCCGAGAGGTCCATCCACGTTCAGCACGTTCACATGAAGGTGCCGTGGCCCAAGCGTAACCGCGGGCCCAGAAACAAGACGCGGCACCTTCTGCCACAGGAAGACCTCATGTGA
- Protein Sequence
- MRCCLSFCNNSRDNHSSTTSTGPQKITFHNFPTTPYLRSCWLAALDVEESQLPDVPLVCSQHFQQDDFYVNKDGFIHLRSNAVPSTVQVCRICLDTASELYPLGKFNLEEAYFNVTGISVCNDLNIALKLCAECAQRLINCHTFKDKSLRAHALLLELVYKHGFLTTQKVKSINRESHQLMSNIVKKVFQPDHCDLYLLDDKEENVYHVPVVKDEEEIRTDDIFNSSKHINSANNRDLEPKQENLNCEIKNDDDFSNVNDAKFLNSSDFNYVGVISNDFDGGVDISNSDADSKPDIPKVDVGAVRKRKVDKGSRKRISSKKSVKRVKGTLKRINNRTKVKSSKERSAAKVKLKNGILKLKKERKKSAKPKVESKPKPVPDEKKLFKKTVLTYEEQLADVQQRKETANYLNARYKCTKCYKGFLDVDAYNGHMIKHTNKYGPFECDICGLHSKSRNNLCRHIVVNHSIRYSCTLCLFVTMHVGTAKSHERWHNGSKFKCPECDLEFGIRSSYLSHLRIKHPSDYACTICGFSFIGERGIKLHMNKKHRFDVENPEGPLCKPCNIRFASDTAYNQHVKVSPRHNIGGKRVRNDPLINTICWRKRPWSGKSKKEDPDAADGEPVDCEQCGIPLKDYWAYTQHFKKAHPDKNRTKYHRPKLLCELCGKVFNNEAQLRYHMPVHSEHKQFKCEVCSKSFGSILNLKSHATLHSATRPSYACDYCGKTFAYQSNKYRHMTIHKGIKFSCEICDKSFNTAPERSIHVQHVHMKVPWPKRNRGPRNKTRHLLPQEDLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953609;
- 90% Identity
- iTF_00801976;
- 80% Identity
- iTF_00801976;