Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000182.1:923470-930591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0045 0.24 12.3 0.8 1 23 231 253 231 253 0.98

2 10 0.22 11 7.0 0.2 3 23 278 299 276 299 0.95

3 10 0.00073 0.039 14.8 0.2 2 23 321 342 320 342 0.94

4 10 0.00069 0.036 14.8 1.2 1 23 346 368 346 368 0.98

5 10 0.0019 0.1 13.4 0.1 1 23 375 398 375 398 0.96

6 10 8.1 4.3e+02 2.0 0.1 3 23 406 427 404 427 0.82

7 10 4.5e-05 0.0024 18.6 3.1 1 23 433 456 433 456 0.97

8 10 0.00017 0.0087 16.8 1.4 1 23 462 484 462 484 0.98

9 10 1.9e-05 0.001 19.7 0.8 1 23 490 512 490 512 0.98

10 10 0.00011 0.006 17.3 4.1 1 23 517 539 517 540 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0045	0.24	12.3	0.8	1	23	231	253	231	253	0.98
2	10	0.22	11	7.0	0.2	3	23	278	299	276	299	0.95
3	10	0.00073	0.039	14.8	0.2	2	23	321	342	320	342	0.94
4	10	0.00069	0.036	14.8	1.2	1	23	346	368	346	368	0.98
5	10	0.0019	0.1	13.4	0.1	1	23	375	398	375	398	0.96
6	10	8.1	4.3e+02	2.0	0.1	3	23	406	427	404	427	0.82
7	10	4.5e-05	0.0024	18.6	3.1	1	23	433	456	433	456	0.97
8	10	0.00017	0.0087	16.8	1.4	1	23	462	484	462	484	0.98
9	10	1.9e-05	0.001	19.7	0.8	1	23	490	512	490	512	0.98
10	10	0.00011	0.006	17.3	4.1	1	23	517	539	517	540	0.96

Sequence Information

Coding Sequence: ATGGCCAATACTACTGCAAAGAAAAGCAAGGGACCTATAATCGACCCGGCTTTGTGCCGCTGTTGCCACTCCATCAAGAAATGTCGCCTCCTCACCTCCGAATACGAGTTCATGGGATCCAAGGAGGTTTATTCTGATATGTTCATGGATGTTTTTGGTCTTTTGTTGTCACACCTGGATGGGGACGGCACCGACTGCTGTATCTGCGCCACATGCGTGTCGCGGCTGAGGGAGGCTGCCGAGTTCAGGAGGCAGGTGCTGCAATCGGAGCAGGTGTTTCTGGAGGCTCGCCTCAGAGACAGCGACAAGCATGTGAAGCTGGAGGTCAAGCGCGAGCCGCCCTGCGATGACGGCGATGGCGACGATCATCATGCTGATCACAATGGTGAATCGGAAATGGACATCGGAAATGATGTTCCAACTATAGAGCCAGATCTGAACGTCTCGAAGGAGAAATCGTCGAGGCGTACCAGAAACGGCCGCAAAGTGAGAGTGAAGGAACTGAGGGCGGGCAAGATGCCGAAGCTACGTACGAAACTGGACAAACTACTGAAACCAGAACTACCCGCAGAAAAATCTCACGCGAAGAAGCAAGCGGAAGAGATGGACCAACACCGCATGGCGCTCAGCAACACCGTCACTATAGTGAACGCGTCCTACGTCTGTCCGTTCCACAACCGGATAAGCTTCTACTACTGCTACTATTGCCGGGATCAATTCACCAACCCGGCCGAATTGCGGGACCACACTCTATCCCATGACCCAGTAGAACTCTTCGAGAACTCCATAGAAAACAAGAAGATCCCGAAAATCGACATCACAAGAATCGACTGTCGCTTGTGTCCCGAAAAAATCGACGATCTCGACACCTTCAAGAATCACATCACCACTCGACACCAGAAGCCCTTGTACCCTGTTGCGAACGAATTCCTCAAATTTAAACTGACATTAAACAACCTAACTTGCACTGAGTGCAGTGCTGTGTTCCCTTATTTTGATTCCCTAAAAAAGCATATGGTCGATCACTTCGGCACCCACACGTGCGACGTCTGCGGCGCTTGTTTCCTAGAGCCCGCGTCGTTGCGTACGCATATAAAGACTCACAACAAAGTCGCCGCTAACTATCCTTGTGAGATTTGCGGGAAAAATCTCAAGTCTAAATACAGTATGGGTCTCCACGTGGCGACGGTACACGAAAAAAAACCGACGATCAACTGCTATAAATGCGACGCCGCGTTCCTTTCCTACGCATTGCGCAACCGGCACTTGATCGAGGCGCACGGCGACAAGCGGACGTTCCCGTGCAAGCTCTGCGACAAGGTCTATAATAGGCGGAAAACGTTGATAGAGCACCACAGACGGAATCACTTGAAGATTTTCAACCACCAGTGCGATCTTTGCGATCAGCGTTTCTACCTTCCCTCTCGGTTAAAGGAGCACATGGCGACACATACCGGCGAGAGGAACTTTCGATGCGAGTTCTGCGACAAGAGTTACCCGCGACTGCAGTCGCTGCAGGAACACGCTAGGTCGCACACCGACAGGAGATTTAAATGTGATGTCTGTAGCGCGACGTTCACGCAGTGCGCCAGTTTAAAGGGCCACATGAAAAGCCATCATGGCGTCTTTGATATGGACGCTAATTTCAATAATTGA
Protein Sequence: MANTTAKKSKGPIIDPALCRCCHSIKKCRLLTSEYEFMGSKEVYSDMFMDVFGLLLSHLDGDGTDCCICATCVSRLREAAEFRRQVLQSEQVFLEARLRDSDKHVKLEVKREPPCDDGDGDDHHADHNGESEMDIGNDVPTIEPDLNVSKEKSSRRTRNGRKVRVKELRAGKMPKLRTKLDKLLKPELPAEKSHAKKQAEEMDQHRMALSNTVTIVNASYVCPFHNRISFYYCYYCRDQFTNPAELRDHTLSHDPVELFENSIENKKIPKIDITRIDCRLCPEKIDDLDTFKNHITTRHQKPLYPVANEFLKFKLTLNNLTCTECSAVFPYFDSLKKHMVDHFGTHTCDVCGACFLEPASLRTHIKTHNKVAANYPCEICGKNLKSKYSMGLHVATVHEKKPTINCYKCDAAFLSYALRNRHLIEAHGDKRTFPCKLCDKVYNRRKTLIEHHRRNHLKIFNHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHARSHTDRRFKCDVCSATFTQCASLKGHMKSHHGVFDMDANFNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01021643;
90% Identity: iTF_01092417;
80% Identity: -