Hsem014046.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hipparchia semele
Gene Symbol
-
Assembly
GCA_933228835.1
Location
CAKOGE010000175.1:1865943-1884005[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.005 0.27 12.1 0.3 1 20 452 471 452 472 0.94
2 11 5.4 2.9e+02 2.6 0.7 10 23 484 496 476 496 0.81
3 11 0.00011 0.006 17.3 0.5 1 23 502 524 502 524 0.98
4 11 5.1e-05 0.0027 18.4 0.8 1 23 530 552 530 552 0.98
5 11 5.1e-05 0.0027 18.4 0.8 1 23 558 580 558 580 0.98
6 11 3.1 1.7e+02 3.3 4.4 1 23 586 608 586 608 0.97
7 11 0.0015 0.081 13.8 1.2 1 23 614 636 614 636 0.99
8 11 0.0021 0.11 13.3 1.5 1 23 642 664 642 664 0.97
9 11 9.8e-06 0.00052 20.7 4.3 1 23 670 692 670 692 0.99
10 11 0.44 23 6.0 0.1 12 23 837 848 836 848 0.92
11 11 0.0028 0.15 12.9 3.4 1 23 854 876 854 876 0.97

Sequence Information

Coding Sequence
ATGAAACGTACagaaacgctaagcaaagtgaaGATGCGGTGCTGTGTACCTTTCTGCGAAAGTAATAGAGAAGAAGTCTCTCCGCCTGCGTCCACAACAGAGCAGATCGGCTTCTACGCATTCCCGCGCTCGCGGCCGGAGCTGGCGGCGTGGCGCCGCGCGCTGGGCGAGCAAGGCAGCGTGCCGGCCGGCGCCGCGGTCTGCTCGCGGCACTTCCTGCGCGAGGACATGTGCGGCGACGGGCAGCTGCGCGCCGGCGCCGTGCCCACCACAGCGCAGGTTTGCATGATATGCCTTCACACGGGCCGCAAAATGTTTTCAATGAGCAAGTACAACTTGAAAGAAGCGTATGAACACTTGACTGGTCATCCGTTGTTCGATGTGGGCAACCTAAAGCATACACTCTGCGTGGAATGCGCTCAGAGATTGACAAACTTTGAAAAGTTCAGAGACAAGAGCTTGAGAGCTCGTGACGTGATGATGGACTTAGTTCAACAACACAAAGTGATAACAATACGAGATATTGCTGCACTGCACCCGCTGAAGTCTGACCTAGCCCAGACTTCGCTAGGAGCTGACCACTATAACCTGCACATACTAGACGGCAGTGTACAAGTGCTTGTAGAGAACGACACAGAGTCCAAGTCGGACCTCGGGCTTCTTATGACATGGGACAGCGCAGACGTGCAGGCAGAGGACTGTGCAGGCGTGCAAGCAGGGAGCAGCACAGACATGCAAGCAGAGGACAGTGCAGACATGCAGGCAGAGGACTGCATAAAGGTGAAGACGGAGCCCATCGAGGACTTGGCATGGACAAGCTCAGAGGACAGTGTCCTGCAGGACGCCAAGCTGCTGGACGTGGCCATGTGCAGGGTGCTGTTGACGAGGATGGCTTGCGTGGAAGAGCGCGCGCTCGCAATGCGGGATCCGCTCAAGTACGAAGATGTGACCGATGAGACTCTCGCAGGGGAAGGCTGCTCGACTGCCGCCCCACCTTTACCCGGGAGACTAGATACAGATACTGAAACCGATACAACCCCGACATCCGAACAAGCGTTTGAGATTGCTGATGGCGAAGAAGTCAACAAATCAAGCCACGAATACAATGACGGAAGAGAAGTATACTTTATTGATATTGATGTCAAGGAAGAAAGAGATCCTGACTCTGAAGGTTCGGATTATCAGACAAACAGCCAAGATGGACTTCCTACGTCAGAGACCACCGCAGCAGACACTGCACATACTACTGTAGAGACAGCGTGTTCAAATGTTGATGTCAATGTCGGGAATATTGAAACGATAAATGATGATAttgtacacacacatacagggAAACATATTGggggaaaaatatttatttgcgaCTTTTGCCAAACTGTTTTTAAACGGAAAAATATGTTAGTGTCACACACTGGTAataaaccttttgcttgtaagtTTTGTCGAAGTTATAGTAAATACAGCTTATTGGACCATGTGAGGACCCACACTGGTGAGAAGCCCTATGcctgtgaggtgtgcaaacGTAAATATGCTGTTAAACAGAGTTTAGTGCGACACATGAGCACCCACACTGGTGAGAAGCCCTATGcctgtgaggtgtgcaaacGTAAATATTCTGTTAAACAGAGTTTAGTGCGACACATGAGCACCCACACTGGTGAGAAGCCCTATGcctgtgaggtgtgcaaacGTAAATATTCTGTTAAACAGAGTTTAGTGCGACACATGAGCACCCACACTGGTGataaaccttttgcttgtaaatTTTGTGAATTTCGAAGTCATATTAAACGTAACTTAGTCCACCACGTGAGGatccacactggtgaaaagccctatGTCTGTGAGGTGTGCAAACATATATTCGCTACTCGGAAAATTTTAGTGaatcacatgaaaactcacactggtgttAAACCTTTTGCTTGTGAGTTTTGTAAATATCGAAGTAGTAGGAATCGAGACGTAGTGACCCACATGAGGACCCACACTGGTGAGAAGCCCTATacctgtgaggtgtgcaaacATAAATTCGCTTTTAAACGGAATTTGGTGCGCCACATGAGAACCCACACTGGTGataaaccttttgcttACCTGTTATTCACTACCGACCCAGaccggcaggTGTCGGTTGCCGCCCCTCTGGGGTCTTCTGACCACTGTGTGGTAAAGTCGGTATCGAACTATCACCCCCTAGATTCCGGTCCTTCCGCCCCACCTTTACCCAGGAGACTAGATACAGATACTGAAACCGATACAACCCCGACATCCGAACAAGCGTTTGAGATTGCTGATGGCGAAGAAGTCAACAAATCAAGCCACGAATACAATGACGGAAGAGAGGTATACTTTATTGATATTGATGTCAAGGAAGAAAGAGATCCTGACTCTGAAGGTTCGGATTATCAGACAAACAGCCAAGATGGACTTCCTACGTCAGAGATCACCGCAGCAGACACTGCACATACTACTGTAGAAACAGCGTGTTCAAATGTTGATGTCAATAGTGGTAATTTGGTgcagcacatgagaactcatactggtgaaaaaccttttgcttgtaatgAATGTCAATATAAATGTAATAGAAAGACGCGTTTAGTGCAGCACATGAGAGCTCACACAGGTGATGAACCTGTTGTTTGTTAG
Protein Sequence
MKRTETLSKVKMRCCVPFCESNREEVSPPASTTEQIGFYAFPRSRPELAAWRRALGEQGSVPAGAAVCSRHFLREDMCGDGQLRAGAVPTTAQVCMICLHTGRKMFSMSKYNLKEAYEHLTGHPLFDVGNLKHTLCVECAQRLTNFEKFRDKSLRARDVMMDLVQQHKVITIRDIAALHPLKSDLAQTSLGADHYNLHILDGSVQVLVENDTESKSDLGLLMTWDSADVQAEDCAGVQAGSSTDMQAEDSADMQAEDCIKVKTEPIEDLAWTSSEDSVLQDAKLLDVAMCRVLLTRMACVEERALAMRDPLKYEDVTDETLAGEGCSTAAPPLPGRLDTDTETDTTPTSEQAFEIADGEEVNKSSHEYNDGREVYFIDIDVKEERDPDSEGSDYQTNSQDGLPTSETTAADTAHTTVETACSNVDVNVGNIETINDDIVHTHTGKHIGGKIFICDFCQTVFKRKNMLVSHTGNKPFACKFCRSYSKYSLLDHVRTHTGEKPYACEVCKRKYAVKQSLVRHMSTHTGEKPYACEVCKRKYSVKQSLVRHMSTHTGEKPYACEVCKRKYSVKQSLVRHMSTHTGDKPFACKFCEFRSHIKRNLVHHVRIHTGEKPYVCEVCKHIFATRKILVNHMKTHTGVKPFACEFCKYRSSRNRDVVTHMRTHTGEKPYTCEVCKHKFAFKRNLVRHMRTHTGDKPFAYLLFTTDPDRQVSVAAPLGSSDHCVVKSVSNYHPLDSGPSAPPLPRRLDTDTETDTTPTSEQAFEIADGEEVNKSSHEYNDGREVYFIDIDVKEERDPDSEGSDYQTNSQDGLPTSEITAADTAHTTVETACSNVDVNSGNLVQHMRTHTGEKPFACNECQYKCNRKTRLVQHMRAHTGDEPVVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-