Hsem014813.2
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000178.1:3103197-3113482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0012 0.066 14.0 3.8 1 23 313 335 313 335 0.98 2 11 0.042 2.2 9.2 0.6 1 20 342 361 342 364 0.94 3 11 0.48 25 5.9 5.2 1 23 368 390 368 390 0.98 4 11 0.0015 0.079 13.8 4.5 1 23 395 418 395 418 0.98 5 11 0.0075 0.39 11.6 0.1 2 23 423 445 422 445 0.95 6 11 0.0098 0.52 11.2 0.5 2 22 458 478 458 482 0.92 7 11 0.034 1.8 9.5 1.2 2 23 508 530 507 530 0.96 8 11 2.5e-05 0.0013 19.4 0.1 3 23 545 565 544 565 0.97 9 11 3.8e-05 0.002 18.8 0.7 1 23 571 593 571 593 0.98 10 11 4.5e-05 0.0024 18.6 0.2 3 23 599 619 597 619 0.96 11 11 0.067 3.5 8.6 0.3 1 14 626 639 626 649 0.77
Sequence Information
- Coding Sequence
- ATGATGGAGTGTTACACCAACAGTGAGCAGAAGAGCGCTGTGCCCTCACCTGCACAGttcTGCATGGTatgtctaaatataaataaggaGTGCAAACTGTACCCAGTAAATAGATATAACTTGGATTTGGAATATGAAAAACTGACTGGAATATCTCTGCAAGGCAAGATGCCCTTTGAGCCACACATCTGTGCAGAGTGCACCCAGAGGCTGAGCAACTGCAGCAAGTTCCGGGACAAGTGCCTCAGAGCGTACCAGCTGTTGATAGGAATGGCCGACAACCCTGACATGaggatagacagacagacaaaccaACTAGCATCTGATATACACAAGAAAGTTTTCCAACCGGACCACTGCGACCTCTATTTGATACATGTTGAAGATAATTCTGAAGCAGAGAAAAATTGTGCAAAagtgaagaaagaaaaaaacgtTTTTGAAGATACAGATACAGTTTTGGATGTTAAATACGAAATTGAAGTCTTCAACACTGACGTTTCAAAGGTTAAAACTGATAATGAACATTGTACTGTCAATGATGTGGATGGATTTGATTATGACATTGATATTGATGTAGATCATTGCGATGACACTAGTCATTTTAATCACGATAAAGCCCCCTTACCTGTTGAACGTAAAAATGTTAAGAAAGAGGGTAAAAATAATACCAAGCAAATCATAAAAGACGATAGAAGAAATAAAGTTAAACAAAAGGGGAAGATTAAATTAGAAACTCaggttaaaaataatgttacCAATAAAGTTCATACGAGaggtttagttaaaaaaaatgttgcgaAGAAAGCAGTTCGTCTGAAGAGAGGAGAAAGAAAGATAGATCTGAAGCTGTTCCAAGAAATCGAGCTGACTCAAGAACAGCAAGTGGCTGAGATATTAAATAGGAAGAAGTCTCACAACTATCTGAACGCACCACACAAATGTGATGTTTGTTACAAAGGCTTCCGGCATTTGGAGGCTTACAACTCGCATATGGATAGACATACCGATAAATTCGGGCTATTCGAATGCGACATATGCCGCATGCGTTTCAAAAGCATTTTCGGCATGCGGAAGCATCTGCCAAACCACAAGTTTGTGTACAAGTGCACAAAATGTCAGTTTGAGTCCAACCATCGAACAGCTGTCGAACACCACACGCGCTGGCATGACGGCAAGACGTACGAGTGCGCGCACTGCGGCGAACAGTTCACTAAATGCACTTCATACATGTCGCACTTGCGTATAAAGCACCCTTCGGACTCGGTGTGCGCGCAGTGCGGTCTGTCGTTCATCGGGGAAAGGGGGTTGCGGATGCATATGGCCAAGAAACACTACCTCGTTGACCGCACGCAGAATTTAAGCGGCCCCTCGTGTGAGACATGCAAGATCCGCTTCGCGTCCCAGGAAGCTTACAAGCAGCATGTGAAAACGTCTCCCAAACATGCGCCTGTCGACCAGCTCAAACCAAACAATCCCATGCAGAAGAAATTCTCCAGAAACACGTCAGTTGTAATATCGACTTGCGAACTGTGCGGGATAGAAGTGAGAAGTGCCCATCAGTACACTATGCATTTCAAAACACAGCATCCGGACCAAAAGCCAGCACAGTTTTTGCATCCCCCTGAAATGTGTGAAATGTGCGGGAAAATTTTCAAGGCGCCCGTACTTCTCCGCCAGCACATGCAAATGCACACGGGGAAGAAGCTGTACAAGTGTGACATCTGTAGCAAGGACTTCATGACCAAGGGCGCTCTGAAGTACCACATAGACCGCCACAGCGACAACCTGGCCTGCAGCGTGTGCCACAAGCCGGCAACGAACCCCGCGAACCTGGCGCGACACATGACGACACACCTGCTCGTAAAGCCGTCCTACGAATGCGAGTACTGCGGCAAGTCCCTCACCAGCGTGCGCGGGCGCGACCAGCACGTGGCGCACGTGCACCACCACGTGCCCTGGCCCAGGAAGGTCAACGGCAGGCGCCTTAAGACCGACGCGCGCAGATTCAGTGTTACCAGcgattaa
- Protein Sequence
- MMECYTNSEQKSAVPSPAQFCMVCLNINKECKLYPVNRYNLDLEYEKLTGISLQGKMPFEPHICAECTQRLSNCSKFRDKCLRAYQLLIGMADNPDMRIDRQTNQLASDIHKKVFQPDHCDLYLIHVEDNSEAEKNCAKVKKEKNVFEDTDTVLDVKYEIEVFNTDVSKVKTDNEHCTVNDVDGFDYDIDIDVDHCDDTSHFNHDKAPLPVERKNVKKEGKNNTKQIIKDDRRNKVKQKGKIKLETQVKNNVTNKVHTRGLVKKNVAKKAVRLKRGERKIDLKLFQEIELTQEQQVAEILNRKKSHNYLNAPHKCDVCYKGFRHLEAYNSHMDRHTDKFGLFECDICRMRFKSIFGMRKHLPNHKFVYKCTKCQFESNHRTAVEHHTRWHDGKTYECAHCGEQFTKCTSYMSHLRIKHPSDSVCAQCGLSFIGERGLRMHMAKKHYLVDRTQNLSGPSCETCKIRFASQEAYKQHVKTSPKHAPVDQLKPNNPMQKKFSRNTSVVISTCELCGIEVRSAHQYTMHFKTQHPDQKPAQFLHPPEMCEMCGKIFKAPVLLRQHMQMHTGKKLYKCDICSKDFMTKGALKYHIDRHSDNLACSVCHKPATNPANLARHMTTHLLVKPSYECEYCGKSLTSVRGRDQHVAHVHHHVPWPRKVNGRRLKTDARRFSVTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -