Hsem014797.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000178.1:2865728-2880484[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.3 16 6.5 3.5 1 23 173 196 173 196 0.95 2 12 6.5e-05 0.0034 18.1 1.4 2 23 201 223 200 224 0.94 3 12 0.027 1.4 9.8 0.4 6 23 230 248 228 249 0.94 4 12 0.00022 0.012 16.4 0.7 2 23 320 342 319 343 0.94 5 12 0.00022 0.012 16.4 0.7 2 23 414 436 413 437 0.94 6 12 0.0056 0.29 12.0 0.7 6 23 443 461 441 462 0.94 7 12 0.013 0.66 10.9 0.1 3 21 514 532 513 537 0.93 8 12 0.7 37 5.4 0.5 2 23 561 583 560 583 0.95 9 12 0.00011 0.0057 17.4 1.3 3 23 597 617 596 617 0.99 10 12 0.001 0.053 14.3 2.2 1 23 623 645 623 645 0.98 11 12 3.9 2.1e+02 3.0 1.1 1 10 652 661 652 674 0.76 12 12 0.00028 0.015 16.1 2.9 1 23 680 703 680 703 0.92
Sequence Information
- Coding Sequence
- ATGAGATACCGGTACGAGAACCAAACGAACACTGTACGTTGGGGCGACACAGCTTCTAGTGAGTTTAGACTAGAATGTGGTGTACGTCAGGGAGGGCTAACCTCTCCGGACCTGTTCAATCTTTATGTCAATGACCTTATTGAGGAGCTAAGTGGCACGGGCATTGGTTGCCACATTGACGGAATTTCTTTTAATAACCCAAGTTATGCCGACGATATGGTGCTACTTAGCCCCTCAATAAATGGTATGCGTAAATTAGTATCGATTTGTGAAAATTATGCTTTGAGACACGGATTGAAATACAATGCGCGCAAATCAGAAATGTTAATCTTTAGAGCGGGTAAAGGTCCGGAGAGGATTCCATCAGTATTGTTAGATGGAGCGCCAGTTCAGGTTGTGCAGCAGTTTAGGTATCTTGGACACATGTTGACGGGATCCCTGAGCGACGACTTTGATATAGAACGGGAGCGAAGCCACGTTGCCATCAACCACGTGAAGCGGCACCGAGGCGTCAAGTTCGAGTGCCCGCACTGCCCGAAGGTGCACAGTTCAAAGTCGGGGCACATGTTGCACCTGCGCGTATCTCATCCCACCGACTCGGTGTGCACCCAGTGCGGGTACTCCTTCATCAACCAGCGGGGGCTCCGGACACACATCAACCTGAAGCACCACGACGAGGACATGCGGTGCGGGTACTCCTTCATCAACGAGCGGGGGCTCCGGATACACATCAACCTGAAGCACCACAACGAGGACGTGCGGGTGAGTCCACAGTCATCTTGTTACGGCGCTGGTCGACTCGGTGTGTACCCAGTGCGGGTACTCCTTCATCAACGAGCGGGGGCTCCGGATACACATCAACCTGAAGCACCACAACGAGGACGTGCGGGTGAGTCCACAGTCATCTTGTTACGGCGCTGGTCGACTCGTCATCTTGTTACGGCGCTGGTCGACTCGGTGTGTACCCAGTGCGGGTACTCCTTCATCAACGAGCGGGGGCTCCGGATACACATCAACCTGAAGCACCACAACGAGGACGTGCGGGTGAGTCCACAGTCATCTTGTTACGGCGCTGGTCGACTCGGTGTGTACCCAGTGCGGGTACTCCTTCATCAACGAGCGGGGGCTCCGGATACACATCAACCTGAAGCACCACAACGAGGACGTGCGGGTGAGTCCACAGTCATCTTGTTACGGCGCTGGTCGACTCGTCATCTTGTTACGGCGCTGGTCGACTCGGTGTGTACCCAGTGCGGGTACTCCTTCATCAACGAGCGGGGGCTCCGGATACACATCAACCTGAAGCACCACAACGAGGACGTGCGGTGCGGGTACTCCTTCATCAACCAGCGGGGGCTCCGGACACACATCAACCTGAAGCACCACAACGAGGACGTGCGGGTGAGTCCACAGTCAACTTGTTACGGCGCTGGTCGACTCGGCGTGTACCCAGTGCGGGTACTGCTTCGTCAACCAGCGGGGGCTCCGGACACACATCAGCCTGAAGCACCACAACGAGGACGTGCGGACGGTCCGCTGTGCGAGGAGTGCGACATCCGCTTCGCGTCCAGCGCGGCTTACCAGCAGCACCTGGAGGTGTCGCCCAAACACGCCGCTGACGGAATAAGACATCGGAACGCTCCGAAAAAAATCACTAGGGAACAGAGCTTCCTAAAATCCAAGTGCGAAGAGTGCGGCGAGCAAATCAGAGGTTTCGCGAAATACCAAGACCACTTCCGACGGATGCACCCCGACAAAACAGTGTCCAAGTACAAGAAACAGGCTCTGTGCGACCAGTGCGGGAAGTATTGCTCGAACGAGTACTGGTTGAAAGTCCACATGCTAACGCACACGGGCAAGAAGCAGTTCCAATGCGACATATGCAAGAAGTTCTCCTACACCAAGCAGATGCTCTCTGTGCACTTGAAGTCACACAGCGAGAAGCAGCAAGTGTACGCTTGCGCCGTGTGCGACAAGAAATTCCTCATCAAAGCCAACTGCAAAAGGCACTTGTGGAGTCACGAGGAGCAGAAGCCGCACCGGTGCCAGATGTGCGACAAGTCGTTCGTAAGCGCGTGCGATCTGCGCGCGCACGTAGCGCACGCGCACTTCAAGAAGCCCTATCCCAAGAAATCGCGCGGCCCGCACAAGCGCGTCAGCCGCGCCCGCCACGACAAGGAGCCCGTCTGCGGCACCATATGGcccaagGACTGCGTCACCGCGGACGGCCAGAGCGCGCACACTCTCGACAGCCGGCAGCTCGCGGCGCGGGAGCCGCAGCGCACACTGCTGGACGTACAGCGTGTCTGA
- Protein Sequence
- MRYRYENQTNTVRWGDTASSEFRLECGVRQGGLTSPDLFNLYVNDLIEELSGTGIGCHIDGISFNNPSYADDMVLLSPSINGMRKLVSICENYALRHGLKYNARKSEMLIFRAGKGPERIPSVLLDGAPVQVVQQFRYLGHMLTGSLSDDFDIERERSHVAINHVKRHRGVKFECPHCPKVHSSKSGHMLHLRVSHPTDSVCTQCGYSFINQRGLRTHINLKHHDEDMRCGYSFINERGLRIHINLKHHNEDVRVSPQSSCYGAGRLGVYPVRVLLHQRAGAPDTHQPEAPQRGRAGESTVILLRRWSTRHLVTALVDSVCTQCGYSFINERGLRIHINLKHHNEDVRVSPQSSCYGAGRLGVYPVRVLLHQRAGAPDTHQPEAPQRGRAGESTVILLRRWSTRHLVTALVDSVCTQCGYSFINERGLRIHINLKHHNEDVRCGYSFINQRGLRTHINLKHHNEDVRVSPQSTCYGAGRLGVYPVRVLLRQPAGAPDTHQPEAPQRGRADGPLCEECDIRFASSAAYQQHLEVSPKHAADGIRHRNAPKKITREQSFLKSKCEECGEQIRGFAKYQDHFRRMHPDKTVSKYKKQALCDQCGKYCSNEYWLKVHMLTHTGKKQFQCDICKKFSYTKQMLSVHLKSHSEKQQVYACAVCDKKFLIKANCKRHLWSHEEQKPHRCQMCDKSFVSACDLRAHVAHAHFKKPYPKKSRGPHKRVSRARHDKEPVCGTIWPKDCVTADGQSAHTLDSRQLAAREPQRTLLDVQRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -