Hsem016486.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:889739-895870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00028 0.015 16.1 0.9 1 23 237 259 237 259 0.96 2 10 0.36 19 6.3 0.2 3 23 287 308 285 308 0.93 3 10 0.00025 0.013 16.2 0.8 2 23 334 355 333 355 0.96 4 10 0.92 49 5.0 8.1 2 23 360 381 359 381 0.96 5 10 0.00011 0.0056 17.4 3.3 1 23 388 411 388 411 0.97 6 10 0.013 0.7 10.8 1.4 1 23 417 440 417 440 0.92 7 10 8e-06 0.00042 20.9 1.6 1 23 446 469 446 469 0.97 8 10 0.00015 0.0079 16.9 2.3 3 23 477 497 475 497 0.95 9 10 4.8e-07 2.5e-05 24.8 1.7 1 23 503 525 503 525 0.98 10 10 0.00044 0.023 15.5 3.6 1 23 531 554 531 554 0.98
Sequence Information
- Coding Sequence
- ATGAACAACTTAAAAGCCAAAGGGCCAGTTGTGGACGCGGGAGTATGCAGATGTTGCGGTATGGAGAAGAAATGCAGGCTTCTGAACGCGGAATACTCATGGCTGGGGCAGAAGGAGGTGTACGCGGATATGTTCGTCGATTGCTTCGGTCTTGTGTTGTCACACTTGGAAGGGGAGGTCTCAGAGAGGCTAATATGTGCAATGTGTGTAACAAGACTGAGGGACGCCAGTCTGTTCCGCCAGCAAGTGCTGCTGTGTGAGGAAAAGCTCCTCACCTCTTACATTCAACTACAGGAAGaAGATAAGAAACCCATCGGgataaaagaagaaaagaaaccTATCAAAGTGGAACTGGACTTGGAAGTGACAGGAAAAGTTGAGGACGACACTCTGTCTGACCGAGACTACACTGacatggAAACAACTGAGCCTGTACAGAAGAAGCCTGTATGTAAAAATTCCAagccaattaaaaaaaacaacaattcaGTGGCAACGCCTAAAAAAAGACCAAGCAAAGTTCGGTCGAAAAACGTTGTAGCAGGCAAAGTGAAGAGAGAAAATGGAACTGACAAGAAACCTATGGATATCCACAGTATGCTAgAATTAATAAGGAAATCGAACAGTGAAAAGGACAAAACCCTCCTGAACGCGGTGACGTTAGTGGAGAACTCGTTCGCGTGCCCGTTCAACGCGTTCTTCAACAACTACCTGTGCATGTACTGCCGGCGCAAGTTCGTCGACCCCGACAAGCTGCGGGAACACACGCTCACTCACGACGTGAGGAAGTACAAGGGCGTCCTCGAGAACTTCCGCAGGAGGAACAACAAGTGCCAGATTGACTTGTATAGGATCGACTGTCGGCTGTGCGACGAAAAAATCAGCGACTTGAACACATTCCAAACCCACATAACACAAGTACACGATAAGAAGTTCTACACAACGACATCCGACAACGATATCATCATACTCAAATACCGTCTAACGAATGAAAACATAAAATGTACAGAGTGCAACGAGGTCTTCACAACCTTCCATCCGTTGAGGCTTCATATGGCAGAGCATTTCGGCACGTGTGTGTGCCACATATGTGGCACGCATTACTTCGAAGACAGATGCCTGAAAGcgcatttgaaaagccacaagCCTTCCGAAGGGATATATACCTGTCCACAGTGCGGAAAGACTTTCAAgtgtaaatataatatgacgATACACATAGCACGCTTTCACACGAAGGAAGATGTGTTTCTGTGCACACAGTGTGACGAGTCATTCTTCTCCAACGCATTGAGACACAAACACATGATAGAAGTGCACAACGAAGACTTCCTCTTCAAATGCAAGGACTGCGGTAAAGTGTACCAAAGCAGGAAACAGTTGAGAGAACACAACAGGAGTGCCCATTTGAAGATCTTCAAACACCTATGTCACATATGCGACAGGAGGTTCTATTTACCCGGTCAGTTGAAAGAGCATATGACGGTTCATACCGGTGAGAGGAACTTCCGTTGCGAGCATTGCGGGAAGAGTTATCCGAGGTTAAAGGCGTTGAAAGTACACATGCAGTCCCACAGTGCGGAAAAGAAGTATAAGTGTAGTTTATGCACTGTCTCGTACAGCCAGAATGTGTGCCTGAAGAACCATATCAAACGACAGCATCCAGCGGTTCACATGGAGGACAGTTATCAGTAG
- Protein Sequence
- MNNLKAKGPVVDAGVCRCCGMEKKCRLLNAEYSWLGQKEVYADMFVDCFGLVLSHLEGEVSERLICAMCVTRLRDASLFRQQVLLCEEKLLTSYIQLQEEDKKPIGIKEEKKPIKVELDLEVTGKVEDDTLSDRDYTDMETTEPVQKKPVCKNSKPIKKNNNSVATPKKRPSKVRSKNVVAGKVKRENGTDKKPMDIHSMLELIRKSNSEKDKTLLNAVTLVENSFACPFNAFFNNYLCMYCRRKFVDPDKLREHTLTHDVRKYKGVLENFRRRNNKCQIDLYRIDCRLCDEKISDLNTFQTHITQVHDKKFYTTTSDNDIIILKYRLTNENIKCTECNEVFTTFHPLRLHMAEHFGTCVCHICGTHYFEDRCLKAHLKSHKPSEGIYTCPQCGKTFKCKYNMTIHIARFHTKEDVFLCTQCDESFFSNALRHKHMIEVHNEDFLFKCKDCGKVYQSRKQLREHNRSAHLKIFKHLCHICDRRFYLPGQLKEHMTVHTGERNFRCEHCGKSYPRLKALKVHMQSHSAEKKYKCSLCTVSYSQNVCLKNHIKRQHPAVHMEDSYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092412;
- 90% Identity
- iTF_01092412;
- 80% Identity
- -