Hsem013935.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000175.1:320202-321773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.091 4.8 8.2 0.1 2 23 160 182 159 182 0.91 2 10 3.6 1.9e+02 3.2 1.6 1 23 188 210 188 210 0.76 3 10 0.29 15 6.6 5.3 2 23 217 238 216 238 0.95 4 10 6e-05 0.0032 18.2 0.3 1 19 243 261 243 264 0.94 5 10 2e-05 0.0011 19.7 0.7 2 23 286 307 285 307 0.96 6 10 0.00021 0.011 16.4 1.6 1 23 314 336 314 336 0.97 7 10 5.8e-05 0.0031 18.2 0.1 1 23 342 364 342 364 0.95 8 10 0.00018 0.0093 16.7 1.9 1 23 370 392 370 392 0.96 9 10 0.00012 0.0064 17.2 3.2 1 23 398 420 398 420 0.97 10 10 3.5e-06 0.00018 22.1 4.6 1 23 426 449 426 449 0.98
Sequence Information
- Coding Sequence
- atgagTGAATTAAATAATGCGTATTGCAGGTTGTGCGCTGAACTGAAGTCTTCAACGAAACTGGTTAATTTATTATGTGAAGATGCGTTAAGAGAGGACATAGtcacaaaattgaaaaaaatcaacaTAAATATCGAATTTTCTGAAGATTCTTTGCCTAATACGGTTTGTTACAAATGCACTGCGTCGCTTGATAAGGCATTTGAGCTAATACTGCTAATAGAAAAGGCGCAACAGGTATTAGAAGATCTTATTTTagtcaaaaatattaaaaaagaagaatttcTATCTGATTTTGATAATGATCTCGATACGTGCATGAATTACGAAGTTGACGTTAAACTTGAGGATACACAAACGCTCAATACCAAAAAAACAAACAGATGTCacgagaaaaaaaagaaaaaacggATAGCTAACGATTTGGATGGTATACCGTTATctcaattaaaattaacatgGCAGGAATATAACTGGCAGTGTGCCTATTGTGAAACATTATTTCCAACGATAGAAGAGTTAAAAAGTCATGCAATACAATTTCACGAATGCTGCAACCCGTATAGATGTACTGACTGCAATATACGCAAATTGAAACTGGATAGCTTCATTGCCCATGTTAAAAGacatagaaaatatttaaaattatcatGTTATCAGTGCCATAAGAAGTTCTCAAAAATAACGGATGTGAAATTACATCATAATCTACATATAGACTCAAATTTTTACTGTACTGGTTGTAATGAAACTTTCAACACTTCAGACGAGTTGACAAATCATAGTAACGCATACAACAGAGATTTAAAAGTGAGACAGTTACCGCCGATAGCTAAAGAACGATTAGAAAGTCTAAATTGTCCCATATGTCAGAAATTGTTCAAATATAAAGGGACTTTAACGAATCATTTACTAACTCATACAGAACGGAAACGTGAACACACATGTGAAAAATGTGGGAAACGATTCTTGAGTAAACAAAATCTGGCTGGGCATATGATGCTGCACGATGATATTAGACCTTACCCATGTGAAATTTGTAAGTTTAGGTTTAGGACTCCAGCACAATTACGCATGCATGTTGGTATTCACGATGGAATTAAACCGTTTGAATGCGATCAGTGCGGTCGTTGCTTCCGTTTAAGAAAGCAACTTGTCAACCACAGTATAGTACACACAGATACTTTACCACATGTATGTAGTTACTGCAATAAAGCCTTTCGTTTTAAGAGCATATTGAATCAGCATATTCGTCAACACACCGGTATTAAACCTTATTCATGCCACTATTGTGAAAGGAACTTCACAAATTGGCcaaattacaacaaacatatgAAACGGAGGCACGGATTGAATATGGCCAAGAAAAAACGTACCCCTAAAGGGGTATACCCGCTAGATCCAGTTACTGGTGAAATGGTTTTGTATGAAGAGACGAACAAAACTCACGAgtggaaaaataaattgttggAAGAATCACGTAAGCCTGGTCGGCCAAAAACCGTTTATCGTGATAAACCAAATGTAACATTGgacaaaaatgaacttttaaATGATGTTAAAACTAGCTAG
- Protein Sequence
- MSELNNAYCRLCAELKSSTKLVNLLCEDALREDIVTKLKKININIEFSEDSLPNTVCYKCTASLDKAFELILLIEKAQQVLEDLILVKNIKKEEFLSDFDNDLDTCMNYEVDVKLEDTQTLNTKKTNRCHEKKKKKRIANDLDGIPLSQLKLTWQEYNWQCAYCETLFPTIEELKSHAIQFHECCNPYRCTDCNIRKLKLDSFIAHVKRHRKYLKLSCYQCHKKFSKITDVKLHHNLHIDSNFYCTGCNETFNTSDELTNHSNAYNRDLKVRQLPPIAKERLESLNCPICQKLFKYKGTLTNHLLTHTERKREHTCEKCGKRFLSKQNLAGHMMLHDDIRPYPCEICKFRFRTPAQLRMHVGIHDGIKPFECDQCGRCFRLRKQLVNHSIVHTDTLPHVCSYCNKAFRFKSILNQHIRQHTGIKPYSCHYCERNFTNWPNYNKHMKRRHGLNMAKKKRTPKGVYPLDPVTGEMVLYEETNKTHEWKNKLLEESRKPGRPKTVYRDKPNVTLDKNELLNDVKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151492;
- 90% Identity
- iTF_01092397;
- 80% Identity
- -