Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000022.1:1053335-1058302[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00015 0.008 16.9 1.3 1 23 294 317 294 317 0.97

2 12 0.0091 0.48 11.3 5.7 1 19 337 355 337 359 0.92

3 12 0.00037 0.019 15.7 2.9 2 23 365 386 364 386 0.96

4 12 0.0017 0.091 13.6 3.3 2 23 391 413 391 413 0.97

5 12 0.11 5.6 8.0 3.1 1 23 416 438 416 438 0.97

6 12 2.6e-06 0.00014 22.5 1.8 2 23 508 529 507 529 0.95

7 12 0.2 10 7.1 0.3 2 23 549 571 548 571 0.95

8 12 1.5e-06 7.8e-05 23.2 5.1 1 23 577 599 577 599 0.99

9 12 4.9e-05 0.0026 18.5 1.8 1 23 604 626 604 626 0.98

10 12 0.00012 0.0063 17.2 2.3 3 23 634 655 633 655 0.97

11 12 2.6 1.4e+02 3.6 1.2 2 19 663 680 663 681 0.86

12 12 0.032 1.7 9.6 3.2 3 23 694 715 693 715 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00015	0.008	16.9	1.3	1	23	294	317	294	317	0.97
2	12	0.0091	0.48	11.3	5.7	1	19	337	355	337	359	0.92
3	12	0.00037	0.019	15.7	2.9	2	23	365	386	364	386	0.96
4	12	0.0017	0.091	13.6	3.3	2	23	391	413	391	413	0.97
5	12	0.11	5.6	8.0	3.1	1	23	416	438	416	438	0.97
6	12	2.6e-06	0.00014	22.5	1.8	2	23	508	529	507	529	0.95
7	12	0.2	10	7.1	0.3	2	23	549	571	548	571	0.95
8	12	1.5e-06	7.8e-05	23.2	5.1	1	23	577	599	577	599	0.99
9	12	4.9e-05	0.0026	18.5	1.8	1	23	604	626	604	626	0.98
10	12	0.00012	0.0063	17.2	2.3	3	23	634	655	633	655	0.97
11	12	2.6	1.4e+02	3.6	1.2	2	19	663	680	663	681	0.86
12	12	0.032	1.7	9.6	3.2	3	23	694	715	693	715	0.95

Sequence Information

Coding Sequence: ATGGAGAGTGAAGAAGTTATCGCCAGTGAATCGGACGCTTGCTATCCAGTTCTCATAATACCAAAAAGTTGTACCATGCTTGAAACAAACTGTGAAGCATGCGATaatgtttatattaaattaaatataacatccTTAGACACTCTGGGAAACGAGTCAACCATATATTCTGGTTTTTGTAACGTCAAAGTCATAGAGGGTTACAACGTTGACCATGATATTATGaaattagataataatttatcagATTCAGACAATGTGCTGGAGGAATTCACCTTAATGGACAGTAATGATCTGTATTATAATGATAATCCGAGTGAAATATTGATAGATCCGATGAATAATCCATGTGTAAGTAATGATAGTAGTCCTAAGGAAGCTGAGGAAAGCTATTCTGTTTATGAAGCACGTAGAGAACAGATTGTTGTGAGGCAGCATAAACCGCTCAAAAGGAAAAATGTTTTCGACGCTGTACGTTATTCACCACTAAGAGAGGTTGAGTTCAAAAAGATTGAACAGGTTGCGATAAATGATGAAATAAATCAACAACTAGTTGATTTAAGTTTAAATGCAGAAGAGCTGGAGTGCGGCATGTTCCTGTCACAGCTGCCGGAGGAGATAATGCTCGCCGGCGAGAACAAGGCTCGCGAGGAGATGAAGTACGTGGACCTGGTGAGCGACAACGACGCCATCCAGCAGCTGATGTCTGCTGACCTGCAGGCGCGGCCGCGGCAGCAGCGCACCATCCTGTACCTGGGCGACAGCTCGCGCGAGGGCCACACCGTGCAGAAGATGGCGGTGCACGACCCCAAGCTGGAGTGCACGGAGGTTGGCGGCGAAAATGATCTCCTTCTTGATGAATATCCGAGCCAAAAGAAGTACCAGTGCGACAAATGCCAGCAGATGTTCAGCCAACTGGCGGCGTTCAGGCAGCACACGCAGATCAAGCACTACCCGGGCGAGTGGACGAGCGCCGCCTCGGGCTGGCCGGTCGTCAGCGAGATGGGCTTCATGTGCTCCGACTGCGGGAAGCATTTCAAAACACGCCAGAAGTTCGAAACGCACTGCCTCGCCCACGGGGACCCGGACCTGGAGTGCCAGAAGTGCCACAAAGTGTTCGCGACCAAGCTGACCCTGAAAAACCACTCCAAAATACACCTGAGAAAAGAGAAATGCCACTACTGCAGGAAGGCTTATCAAAAGCCCAAAGAGCTGCGCAATCATTTGCTGAAGATGCACTGTATTCATCAATGTGACAAGTGCACGTTTTCGTCGTTCAAGCGGGACGATTTGCTGGAACATAGGAGGGGTCACAGGGAGGTGGGCTGCGAGAGTGACAGCGAGGCCACGCTGTCTCTGGACGGCTGGCGCGAGCCCGTGGCGGCCGCGGAAGACGTCCTGGTGACGTACAAGACGACCCCGCGCTCGCCAGATTCGCAGGACCCTGACTCCGTGATCGCTAAAGTGATGAGGAACAAGATGTTCCTCCTTAACTCCAAAGCGAGCAAATTTATGCAGAAGGTCTGCAATATATGCCACAAAAGCTTCTCCCGCGTCAGCGAACTGAAGCGCCATCTCATCGAGCACATCATCCGCAGCACCCTCGCCAAGAAACCGGTCGACGACAGCGGCACCCTCGCCATGGTGTGCGAAGTGTGCCAGGCGCAGACTTTCCGACGAGTCGACAGGTACAAGGCACATCTACGCGAACATGCAAAGCTGACGATATACCAGTGCACATTCTGCAACAAATCGTTCAGCGATTCAAGCAACTTCTCGAAACACAAGAAAACCCACGGCTCGATGTACTTCCAATGCGATCTCTGCCAACGTAAATTTAACTCCAAGAGAACTCTAATAGCACATTTGCAGTACCACGTCAAAATGAAACCGCAACTTTGCAATTATTGCGACAAAGAATTTCATTTTCCGACATCACTAAAGAAACACATAAAAATTTCGCACACACGCGACACAACCCGCGCCAAATGCAAATTTTGCAACGAATATTTTAAGAGTCTAAAAGACAAATGGGATCACGAATGGTTGGTGCATAACATCAGGAAGATGATTGTGGACTGTCTCCTCTGTGGCGCAAAGTTCAGAAAATATTCTGAACTGAAACAACACTGCAGGACGTTTCACGAGATAGCAATACCGACCACTAAGAAGCTGCTACAAAAACGTAAAGGCCGTAAGTAA
Protein Sequence: MESEEVIASESDACYPVLIIPKSCTMLETNCEACDNVYIKLNITSLDTLGNESTIYSGFCNVKVIEGYNVDHDIMKLDNNLSDSDNVLEEFTLMDSNDLYYNDNPSEILIDPMNNPCVSNDSSPKEAEESYSVYEARREQIVVRQHKPLKRKNVFDAVRYSPLREVEFKKIEQVAINDEINQQLVDLSLNAEELECGMFLSQLPEEIMLAGENKAREEMKYVDLVSDNDAIQQLMSADLQARPRQQRTILYLGDSSREGHTVQKMAVHDPKLECTEVGGENDLLLDEYPSQKKYQCDKCQQMFSQLAAFRQHTQIKHYPGEWTSAASGWPVVSEMGFMCSDCGKHFKTRQKFETHCLAHGDPDLECQKCHKVFATKLTLKNHSKIHLRKEKCHYCRKAYQKPKELRNHLLKMHCIHQCDKCTFSSFKRDDLLEHRRGHREVGCESDSEATLSLDGWREPVAAAEDVLVTYKTTPRSPDSQDPDSVIAKVMRNKMFLLNSKASKFMQKVCNICHKSFSRVSELKRHLIEHIIRSTLAKKPVDDSGTLAMVCEVCQAQTFRRVDRYKAHLREHAKLTIYQCTFCNKSFSDSSNFSKHKKTHGSMYFQCDLCQRKFNSKRTLIAHLQYHVKMKPQLCNYCDKEFHFPTSLKKHIKISHTRDTTRAKCKFCNEYFKSLKDKWDHEWLVHNIRKMIVDCLLCGAKFRKYSELKQHCRTFHEIAIPTTKKLLQKRKGRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -