Hsem002507.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000012.1:2677433-2686282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0078 0.41 11.5 0.0 2 23 198 220 197 220 0.94 2 11 0.0061 0.32 11.9 5.7 1 19 281 299 281 304 0.95 3 11 0.93 49 5.0 0.4 6 23 314 331 312 331 0.95 4 11 0.028 1.5 9.8 1.7 3 23 339 359 337 359 0.96 5 11 5.5e-05 0.0029 18.3 3.3 1 23 367 389 367 389 0.97 6 11 6.4e-05 0.0034 18.1 0.4 1 23 398 421 398 421 0.98 7 11 0.00029 0.015 16.0 0.2 1 23 427 449 427 449 0.97 8 11 2.2e-06 0.00011 22.7 2.4 1 23 455 477 455 477 0.98 9 11 0.00067 0.035 14.9 0.7 1 23 482 504 482 504 0.98 10 11 3.9e-06 0.0002 21.9 4.2 1 23 510 532 510 532 0.97 11 11 0.00018 0.0093 16.7 2.9 2 23 539 561 538 561 0.95
Sequence Information
- Coding Sequence
- ATGGCTCAGAATATAAAGGATCTGTGTCGACTCTGTGCTAAAGGCGAAGTGTTTACCAAAGATTTGACAGATGATAGTAATAAGAATATTCTCAAAATGATACAggaatatatacatatatctATAGCTGAAAATGATGATTTACCTACTAAAGTGTGTTTAAACTGCGAGGAGAGAATGGTTTCATTTCAGCTGTTTGTCTTAGAATGTTTGAAAGTGCAAGAGACATTAAAGAAAATGTGCATAGAGGCATGCCAAACATTTCCCATGATTAAGTTTGAAGATGACATTATAGAGTTTAGGTTACCACCTATTAAGTCTGAGGTCAAAGTGGAACTGATGCCAGAAGAATTAGTGAATGCTATAAACAATGATGAATCATTTGGAGATGATTATGAAGCTGATGACTACAGCAATGGTGACAATAGAATAGACAGTGACGGTGATTTGAGTGACTCTGTAACATTAGCAACACTAAAGAAGACAAAGATGAAAAAGACCAAGAGAAAACAATTAAGTGAAGAAGAGAAAATAGAATTTAAGAATGTACTCAAGAAATCCAACTTGAATGTAAAAGATTTTGtaaaACTAGAATGCAACATGTGTGAAGAAGCCATGTCAACGTGGAGCGCTTTAAGAGTTCATTATGCTAAAGTACACAAAAGCAAGCCCATGGTGTTTTGTCTGTGTGGCTTCCTCATCCGTTCTAAAAGTGTACTCTACAAACACGTATCAGATCACAGGATAGAAAGCCGTAAACTTAAAAAGAACGACGGCTCAGATTCGGAAAAAACTGAAGAATCGAAGTATTCAAGTTTAAATGTCAATGATTTTGTGAACTTCACATGCACATATTGTCAGAAGGAATGCACAAGCTGGTATAGTCTGAAGGCCCATTGTGAATGGAAACACAAAACGTCGCCAGTAGTTCGCTGTAGCTGCGGCATTACTTTAAAGTCTAAATCCGTTTTGTATAAACATGTGCAGGATCACAAAAATCCCAATGTTATCTGTTGTGACAAATGCCCGCGGATAACTAAAACGGAAGCGGCGATGAATAAACACAAAATGAGGCATGTACCGAAGTCTGAGCGGAAGTTTTGCTGTGGTTCATGCGACAAGGTGTTTAACTCTAAGGACACTCTCAAATCACACGAACGGTCGCACATACCGAttgaagaaagaaaaatataccgATGTGAAATATGCGATCTAAAGTTCACGACTCGGTCGTCAGCGGCCTCGCACAAGCGCGTCGTGCACGAAAAGATCAAGAGTTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGACAAGCCCTTCGTGTGCCGGACCTGCTCCAAGCCATTCAAAACGTATTCGAACCTGAAGACGCACATGGACACGCACGAGGACACGTCGTACGTGTGCTTCGTGTGCAGCCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCACCTGCTGGTGCACGAGGACAAGTGCCGCCACGTGTGCTCCTACTGCAACAAGGCCTTCAAGCGCAGGCAGACGCTCAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTCACGTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCCGTGCAGTACTCCTCCTACAGCACGCACGTCGTCATGCCAGAGGGATATATCAAAAACGACATGCCTCTGAACAATGCGAAATCCGACGTGGAAGCTATTCAATAA
- Protein Sequence
- MAQNIKDLCRLCAKGEVFTKDLTDDSNKNILKMIQEYIHISIAENDDLPTKVCLNCEERMVSFQLFVLECLKVQETLKKMCIEACQTFPMIKFEDDIIEFRLPPIKSEVKVELMPEELVNAINNDESFGDDYEADDYSNGDNRIDSDGDLSDSVTLATLKKTKMKKTKRKQLSEEEKIEFKNVLKKSNLNVKDFVKLECNMCEEAMSTWSALRVHYAKVHKSKPMVFCLCGFLIRSKSVLYKHVSDHRIESRKLKKNDGSDSEKTEESKYSSLNVNDFVNFTCTYCQKECTSWYSLKAHCEWKHKTSPVVRCSCGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTEAAMNKHKMRHVPKSERKFCCGSCDKVFNSKDTLKSHERSHIPIEERKIYRCEICDLKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCSKPFKTYSNLKTHMDTHEDTSYVCFVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAVQYSSYSTHVVMPEGYIKNDMPLNNAKSDVEAIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01151436;
- 90% Identity
- iTF_00953791;
- 80% Identity
- -