Hsem014790.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000178.1:2820794-2844424[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.17 9.1 7.3 1.2 1 23 530 552 530 552 0.95 2 21 0.054 2.9 8.9 0.6 1 23 559 582 559 582 0.97 3 21 0.045 2.4 9.1 1.2 2 23 614 637 613 637 0.97 4 21 0.00015 0.0079 16.9 0.9 2 23 642 664 641 664 0.95 5 21 0.14 7.3 7.6 0.1 3 21 678 696 677 701 0.93 6 21 4e-05 0.0021 18.7 0.9 3 23 770 790 768 790 0.97 7 21 2.2e-05 0.0012 19.5 0.7 2 23 797 818 796 818 0.97 8 21 0.00086 0.046 14.5 0.9 1 20 825 844 825 847 0.91 9 21 0.28 15 6.6 3.3 1 23 854 877 854 877 0.90 10 21 0.0086 0.45 11.4 0.9 1 23 1425 1447 1425 1447 0.98 11 21 0.012 0.63 10.9 2.2 1 23 1454 1477 1454 1477 0.97 12 21 7.1 3.7e+02 2.2 2.7 1 23 1481 1503 1481 1503 0.97 13 21 0.053 2.8 8.9 1.8 2 23 1509 1532 1508 1532 0.97 14 21 0.086 4.5 8.2 0.3 2 23 1537 1559 1536 1559 0.95 15 21 0.086 4.5 8.2 0.3 2 23 1591 1613 1590 1613 0.95 16 21 0.086 4.5 8.2 0.3 2 23 1645 1667 1644 1667 0.95 17 21 0.14 7.3 7.6 0.1 3 21 1681 1699 1680 1704 0.93 18 21 0.0001 0.0053 17.5 2.6 3 23 1772 1792 1770 1792 0.97 19 21 1.4e-05 0.00074 20.2 0.5 2 23 1799 1820 1798 1820 0.97 20 21 0.0011 0.06 14.2 0.7 1 20 1827 1846 1827 1849 0.91 21 21 0.0023 0.12 13.2 2.3 1 23 1856 1879 1856 1879 0.96
Sequence Information
- Coding Sequence
- ATGAGATGTTGCGTGTCGTTTTGTGTGAACAATTCGGAAATAATATGTGACTCCAAAAATGTAACATTTCACAGATTGCCTACAGAAAAACTTCGCCGTGCTGCCTGGATCCAAGCCCTGGGTATTGAGGAGAGGAACCTACAAACAGTCAGGGGCCCGTCCATCTGTTCGCTGCATTTCAGGCAGAAGGACTTTCATACCACTAAAACTGGGCTGTGGGCGGTGAAGAGAAGCGCGGTGCCTAAAAATGAACAGatCTGCATCGTATGTCTGGACACAGGCAGGAGACTGTTTCCACTgaactattataatttagaagCGCCTTATGAAAATGTGACTGGCATATCTTTGAGCAAGTTCAATGCAATCCGGTCACCGAGAGCGTGCGCAGAGTGTGGCCAGCGTATGTTGAGCTGCAACGCGTTCCGAGACAAGTGCGTGCAGGCACACAGCTTGCTGCTGAAACTGAGTCGACAGGATGACCTGTTAAGAATGGAAActataaagaaagtaaataggaaaaaacataaattaaaatctaatttaGCAAAGGAAATTTTCGAACCGAACCATAGTGATTATCATTTGATACACGACGAAAgaagtaataatttaaaaatagagaGCTCAAGTAATGTTGCAGTAAAAAGAGAGAGTATTGTCTATGGTCCAGACATTACGGacgaaatgaaaaatgaagCCGCGAAATCGGTTGGATTGAGGCCGAAACAGGAAGGAGCCAATAATGAGGTCTCAAGTGACAGAGAGTTATTACATGTTGATATTGTCAACGATGAATTCTTAAGTGATCACATAAACGAGatcGTAAAAAATGACAAAGACAATGTAGTTAAAAAGAATGACAGTTGTAAAGATGTCAAACTCTTAAACAAAAACAGAGATAATGTAGATAGACATACAATTAATGACAGTGGTAAAGATGTTAAACTTTTAAAGAAAGACATAAAAGTCGATATAGAGTTCTCAAACCAACCAACAATTGATCATGATACGGATTTTGCTGACGAAAATGCCGATAAAGTTGATAAAAATGACTGCAACGTCAATTCACCTGATGAAAATGCTGATATTGATATAGATGAAAATGGTGATGATGTTGATTTGCCTGGTGAAACTGGTGACATTGACATAGATGAGAATTATGTTGATCTTAATTTGCCTGATGAAAATGATGACATTGAAATGGATGTCCCCAATCAAAATGACAGTGATGTAGAATTAGTTGAACCTGCTATTAAAGCTGAtgataaaaagtttattaaagCTAAACTGAATAAAGGCACATTAAATACAAACAAATGTAAAGTTAAACGACAACAAAAAATTGcgttaaacaaaacaaaagtcaAATTAAATGAATTGAACGGTACATCGAACAAAAATGGTAGTGCAGGGAAAATTAGAAAACGGAGTCGAAAACGGAAAACGGAATGCCAAGGACAATATTTGAGAAGGAAACCGCCAACTGGTGGCATGGAGCTGTTTAAAGTGTCAGTTTTGACGTACGAAGAACAGATCGCCGATTTACACAGCAGAAAAGATACGTCAGTATACAAGAACTCGACGTTCAAGTGTCCGCACTGCTTCAAGGCGTACCAGTTCGAAGAACCCTACGACGCGCACATGCTGCAGCACACAGACaaatatgGACAGTTTGAGTGCGCGATTTGTGGGATTCACGCAGTCAGTCGACAAAAACTGTTACACCACCTCAACATGGCGCACGCGGTGCGCTACTCCTGCACGCGGTGCGCTTTCCACACCCGCCACAGGAACACGGCGAAGTCGCACGGGCGAGCGCACCAGGGCACTAAGACCAAGTGCCCGCACTGCGGCGACGTCGAGTTCACCAACCTGAACTCCCTGCTGTCGCACGTGCGCAAGAAGCACCCGTCCGCATGCGTTTGCCCCGTATGCGGGTATTCCTTCAGCGGGAAGACGGGCCTCACCTTACACCTGCAGAGGAAACATCAGCTGCACGACGcacagGGCGAGCTGAGCGGGCCGCTGTGCGCGGAGTGCGACATCCGCTTCGCGTCGCAGACGGCGTACGAGCAGCATCTGGCGGTGTCGCTGCGGCACACCACCGAAGATAACGCTCAGCCCAACGCTCCGCCTCGGCGCAGATTCAAGGGGCTCCCGAGGCGCCGAGGCGCACAAACTGTGACTTGCGagcagTGTGGCGCGAAACTGAAGGGCTTCAAGCACTACTCTATCCACTTTGAGAGCCAGCACAGCGACAAGACCCGCACGCAGTTTGCGAACCCGCACGAGCGGCGCTGTCTGTGCGAATTGTGCGGGCGAGTGTTCCagaATTCGAGCGCGCTCAAAAGCCACATGCTGATCCACGCGGGCAAGAAGGACGTGCAGTGCACGATATGCGACAAGCGGTTCTACTACCAGCGCCAGCTGACCCTGCACATGGACATCCACAGCGAGCCCAAGCGCACGTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAACAAGTCCAACAAAAACCGCCATCTGTGGACCCATACTCAAGTTTCGCGGCCCTTTAAGTGCCACGCGTGCCCCAAAACCTTTGTGTATCCATCAGAGAGAAAGTTCCACATCAACCATGCTCATGCGAACCAGCCTTACCCCAAGAAACCGAAGAACAGAGTCAGAAACAGTCGACCCAAACATGTGAAGGAGGCACCGATGCCAACAGAGAAGGTCCGGCGCGCCGCCTGGGTGCAAGCTCTGGGAATTGAGGAGAAAAACATGCAGAGGCTGCGGGGGCCCTTTATCTGTTCACTGCACTTCCGGGAGGGAGACTTCTACATGACAAAAGGTGGACAAAGGGCAGTGCAGAGAGGCGCCGTGCCTAGAACTGAACAGatCTGCATCATATGTCTTGATACAGGCAGGAGACTGTTTTCGTTGAACTACTATAATTTAGAAGAGCCTTATGAAAATGTGACCGGCATATCTTTAAGCAAGTTTAGTTTCATCCTGTCACCACGCCTGTGCTGGGAGTGTGGGCAACGTTTATTGAACTGCAACATGTTCAGAGAGAAGAGCGCGAGGGCACAGCAGATTTTGATGAAGTTAGCGCAGCAAGACGAGTTGctaaAAATGCAAACCATAAAGACAGTGAATAGAAAGAAACATAAACtaaaatcaaatattaaaaaggaaatCTTTGAACCTGACTTCTATGACTACCATTGGGTCCACAATGAGAACAGTAAAAATGTGAAAGCGGAAAACAGagagagaaataaaaatatcaaagtgAAAATAGAGAAAGTTGTCTATGGTTCCGATGCAAAGACTGAAGTTAAGAATGAAGCAGAGAAACTGACGATCGTTTATGAACCTAAAAAAGAaggtgcaaaaaatgacgtcgctAGCGATGACGAGTTTTTGCACGATGACATTGACAACGACGAATTCCTGAACGGCGGCATAGACAAGgTTAAAAAGAAAACCAAAGAGAACTCAGATAAATGCACTAAGAATGACAGTTCCAAAAATGTCAAACTGTTAAATAAAGCCATAGAAGTTGATGTGGAATTTCTAAACCATGATATTGATTGTGACATGGATTGTGTTAACGAAAACAAcgataatgttaataaaaatgaCTGTAATATCAATTTACCTGATCATAGTGTTGACATCGACATAGATTTCCCGATTGACAATGACGATACTGATGTAAATTTTATGTCTACAAATGTCAGTAATGTAAATTTACCTGATGCAAATGACGTCATTGACTTCAATTTTCCAGTCAAAAATGACAATAATGATAAGTCTATCACTAAAAATATCAACTTACCTGATGATGACTATGATATAGATTTCAATGATGACATAGATTTTAATGATGATAATGAAATGGATCAATCTGATAGAAATGACAGTGACGTGGAACTAATAGAAACGACTGCCAAAagcgaaattaataaaaaatgtgctaGCAAAACTAaagttaaattaaacaaaaaaggtACATTAAATAGCAGTAAAAGTAAAGTAAAGTTAAATAGAACGAAAGTTAAATCAAATAAGTCGGAATTAACATTAAATAAAGATGGAAGCACAGCCAAGGTTAAAAAAAGAAGTCGGAAACGTAAGACAGAATTTCAAGGACATTATCTGAGGAGAAAAGCTCCCACTGGTGGCATGGAACTTTTCAAAGTGTCAGTTTTGACATATGAAGAACAGGTCGCGGATATACAGAGTAAAAAGGACACACCTCTGTACAAGAACTCCACCTACAAATGCACATATTGTTTCAAAGGATACCAGTTCGAGGACGCGTTTGAGGCACACATGGAACAACACACAGACAAATACGGCGAGTTCGAGTGCGCGATATGCGGCATCCACACGTCGAGCCGCCAGAAGCTGCTGCACCACCTCAACATGACGCATGTCGTGCGCTACTCCTGCACGCTGTGCCCCTTCTACACCAGGCACAGGAACACGGCGAAGTCGCACGGGCGCTGGCACAACGGGACCAAGACCAAATGTCCGCACTGCGACGATGTAGAGTTCAGCAAGCTGACGTCACTGATGTCGCACATCCGCAAGAAGCACCCGTCGGACTGCGTGTGCGCGCTGTGCGGGTTCTCCTTCATCGGGGAGCGCGGGCTGGCGCTGCACCTCAAGATGAAGCACCAGTTCGACGACACGCAGGTGAGTCGCCACTTGTACTGCAGCAAGCTGACGTCACTGATGTCGCACATCCGCAAGAAGCACCCGTCGGACTGCGTGTGCGCGCTGTGCGGGTTCTCCTTCATCGGGGAGCGCGGGCTGGCGCTGCACCTCAAGATGAAGCACCAGTTCGACGACACGCAGGTGAGTCGCCACTTGTACTGCAGCAAGCTGACGTCACTGATGTCGCACATCCGCAAGAAGCACCCGTCGGACTGCGTGTGCGCGCTGTGCGGGTTCTCCTTCATCGGGGAGCGCGGGCTGGCGCTGCACCTCAAGATGAAGCACCAGTTCGACGACACGCAGGGCGAGCTGAGCGGGCCGCTGTGCGCGGAGTGCGACATCCGCTTCGCGTCGCAGACGGCGTACGAGCAGCATCTGGCGGTGTCGCTGCGGCACACCACCGAAGACAAGCTTCAGCGCAACGAGCCGACGCGGCGCAAGCTGAAGGGGCCGCCGAGACGCCGCGGCGAGCTGACCGTGACGTGCGAGCAGTGCGGCGTCAAGCTTAAGGGCTTCAAACACTACACGTACCACTTCAAGCGGCAGCACCGCGACAAGATCCGCACGCAGTTCGCGAACGCGCACGAGCGCTGCCTGTGCGAGCAGTGCGGCCGCGTGTTCCAGCATTCGAGCGCGCTCAAAAGTCACATGCTAGTGCACGCGGGCAAGAAGGACGTGCAGTGCACGATATGCGACAAGAGGTTCTACTACCAGCGCCAGTTGACCATACACATGGACATCCACAGCGAGCCCAAGCGCACGTTCGACTGCCCGGTGTGCGCGCGCAGCTTCACCAGCCAGTCCAACAAGAACCGCCATCTGTGGACTCACACCCAAGTGTCCAGGCCTTTTAAATGCCACGCGTGCCCCAAAACCTTCGTGTATCCATCAGAGAGGAAGATCCACATCAACCACGCACATGCGAACCAGCCCTACCCCAAGAAGTCTAAGAACAGAGTCAGAAACAGTCGACCCAAGTTTGTGAAGGATGTCGCATACGGGCAAATCGGGCCTCAAGGGGGTATTAACGAGGCCTCGTACTCCAGTGAAACCAGTGCGATACTTAACGAGTGA
- Protein Sequence
- MRCCVSFCVNNSEIICDSKNVTFHRLPTEKLRRAAWIQALGIEERNLQTVRGPSICSLHFRQKDFHTTKTGLWAVKRSAVPKNEQICIVCLDTGRRLFPLNYYNLEAPYENVTGISLSKFNAIRSPRACAECGQRMLSCNAFRDKCVQAHSLLLKLSRQDDLLRMETIKKVNRKKHKLKSNLAKEIFEPNHSDYHLIHDERSNNLKIESSSNVAVKRESIVYGPDITDEMKNEAAKSVGLRPKQEGANNEVSSDRELLHVDIVNDEFLSDHINEIVKNDKDNVVKKNDSCKDVKLLNKNRDNVDRHTINDSGKDVKLLKKDIKVDIEFSNQPTIDHDTDFADENADKVDKNDCNVNSPDENADIDIDENGDDVDLPGETGDIDIDENYVDLNLPDENDDIEMDVPNQNDSDVELVEPAIKADDKKFIKAKLNKGTLNTNKCKVKRQQKIALNKTKVKLNELNGTSNKNGSAGKIRKRSRKRKTECQGQYLRRKPPTGGMELFKVSVLTYEEQIADLHSRKDTSVYKNSTFKCPHCFKAYQFEEPYDAHMLQHTDKYGQFECAICGIHAVSRQKLLHHLNMAHAVRYSCTRCAFHTRHRNTAKSHGRAHQGTKTKCPHCGDVEFTNLNSLLSHVRKKHPSACVCPVCGYSFSGKTGLTLHLQRKHQLHDAQGELSGPLCAECDIRFASQTAYEQHLAVSLRHTTEDNAQPNAPPRRRFKGLPRRRGAQTVTCEQCGAKLKGFKHYSIHFESQHSDKTRTQFANPHERRCLCELCGRVFQNSSALKSHMLIHAGKKDVQCTICDKRFYYQRQLTLHMDIHSEPKRTFDCPVCARSFTNKSNKNRHLWTHTQVSRPFKCHACPKTFVYPSERKFHINHAHANQPYPKKPKNRVRNSRPKHVKEAPMPTEKVRRAAWVQALGIEEKNMQRLRGPFICSLHFREGDFYMTKGGQRAVQRGAVPRTEQICIICLDTGRRLFSLNYYNLEEPYENVTGISLSKFSFILSPRLCWECGQRLLNCNMFREKSARAQQILMKLAQQDELLKMQTIKTVNRKKHKLKSNIKKEIFEPDFYDYHWVHNENSKNVKAENRERNKNIKVKIEKVVYGSDAKTEVKNEAEKLTIVYEPKKEGAKNDVASDDEFLHDDIDNDEFLNGGIDKVKKKTKENSDKCTKNDSSKNVKLLNKAIEVDVEFLNHDIDCDMDCVNENNDNVNKNDCNINLPDHSVDIDIDFPIDNDDTDVNFMSTNVSNVNLPDANDVIDFNFPVKNDNNDKSITKNINLPDDDYDIDFNDDIDFNDDNEMDQSDRNDSDVELIETTAKSEINKKCASKTKVKLNKKGTLNSSKSKVKLNRTKVKSNKSELTLNKDGSTAKVKKRSRKRKTEFQGHYLRRKAPTGGMELFKVSVLTYEEQVADIQSKKDTPLYKNSTYKCTYCFKGYQFEDAFEAHMEQHTDKYGEFECAICGIHTSSRQKLLHHLNMTHVVRYSCTLCPFYTRHRNTAKSHGRWHNGTKTKCPHCDDVEFSKLTSLMSHIRKKHPSDCVCALCGFSFIGERGLALHLKMKHQFDDTQVSRHLYCSKLTSLMSHIRKKHPSDCVCALCGFSFIGERGLALHLKMKHQFDDTQVSRHLYCSKLTSLMSHIRKKHPSDCVCALCGFSFIGERGLALHLKMKHQFDDTQGELSGPLCAECDIRFASQTAYEQHLAVSLRHTTEDKLQRNEPTRRKLKGPPRRRGELTVTCEQCGVKLKGFKHYTYHFKRQHRDKIRTQFANAHERCLCEQCGRVFQHSSALKSHMLVHAGKKDVQCTICDKRFYYQRQLTIHMDIHSEPKRTFDCPVCARSFTSQSNKNRHLWTHTQVSRPFKCHACPKTFVYPSERKIHINHAHANQPYPKKSKNRVRNSRPKFVKDVAYGQIGPQGGINEASYSSETSAILNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -