Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000047.1:2371503-2379969[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00018 0.0093 16.7 3.7 1 23 351 373 351 373 0.99

2 12 0.12 6.5 7.8 3.4 1 23 379 401 379 401 0.98

3 12 1.5e-05 0.00079 20.1 0.8 1 23 408 430 408 430 0.98

4 12 0.016 0.83 10.6 5.1 1 23 435 457 435 457 0.96

5 12 0.0011 0.057 14.2 2.4 1 20 463 482 463 485 0.94

6 12 0.00017 0.0088 16.8 1.8 1 23 591 613 591 613 0.98

7 12 1.5e-06 7.8e-05 23.2 0.3 1 23 619 641 619 641 0.97

8 12 0.0079 0.42 11.5 2.2 1 23 647 669 647 669 0.98

9 12 0.00032 0.017 15.9 4.1 1 23 675 697 675 697 0.98

10 12 0.00019 0.0098 16.6 3.9 1 23 703 725 703 725 0.97

11 12 0.00017 0.009 16.7 6.1 1 23 731 753 731 753 0.98

12 12 0.00086 0.046 14.5 2.0 2 23 759 780 758 780 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00018	0.0093	16.7	3.7	1	23	351	373	351	373	0.99
2	12	0.12	6.5	7.8	3.4	1	23	379	401	379	401	0.98
3	12	1.5e-05	0.00079	20.1	0.8	1	23	408	430	408	430	0.98
4	12	0.016	0.83	10.6	5.1	1	23	435	457	435	457	0.96
5	12	0.0011	0.057	14.2	2.4	1	20	463	482	463	485	0.94
6	12	0.00017	0.0088	16.8	1.8	1	23	591	613	591	613	0.98
7	12	1.5e-06	7.8e-05	23.2	0.3	1	23	619	641	619	641	0.97
8	12	0.0079	0.42	11.5	2.2	1	23	647	669	647	669	0.98
9	12	0.00032	0.017	15.9	4.1	1	23	675	697	675	697	0.98
10	12	0.00019	0.0098	16.6	3.9	1	23	703	725	703	725	0.97
11	12	0.00017	0.009	16.7	6.1	1	23	731	753	731	753	0.98
12	12	0.00086	0.046	14.5	2.0	2	23	759	780	758	780	0.97

Sequence Information

Coding Sequence: ATGTCTACTAGTTCTTCAATTATGcagGTCTGCATCATATGTTTGGATACTGAAAGCAAGTTGTATGTGATGAATAAATACAATTTGGAAAAAGCGTACGAAAATCTCATAGGATATTCTATGTGCGACAATGAGCATGTAATGACAAAATTCCTCTGCGCCGAATGCATGCGTAGACTTGTGAACTTCAGTAAGTTCAGGTACAAGAGCTTGAGGGCCCGTTCAGTGATGGAagaattattgagaaactaTCGTGAACTGATAACAGTGGATTATATAAAGCTAATCGATCGGAACGTATACCAACTTAAATCTGACATTCAGAAGACAGTATTCGAGCCCAACCATTGTGACATGTACATAGATAGTTCTGAAATAGACTCTACTTTTCAAGAAGTGTCACTTAAAGATGAATCTTTGTCGAATGAAGACACTCACTTGAAGTTGACGGGTTTAAACCACGatgcaaacagacaaacagatttTAACAGGATCTTCGGAGATACCATGGTCAAAATCGAAAAAAACCTTTACGAAGATTGCATAGATATAGAATCAGATATAGTGAATGAATATAATAGCTATGATAATACAAATTATGAAGTGATAGAAGACGATAATTTGTCTGATAGCACTTTAGTTTTAGATACAAAACCAACTATCGAAGAATTGCTAGACCAAAATCAGAATAATTTTATCGAGAATATTCAAACTCCGGACATGTCATCTGAACCAAATAATGGATGTTTTAAAGAGGAAAACAACCACAACATCGAAGATACCAAATTAGATAACATATcaactaaaaaaaagaaaaaaatacaagaaaaactTGAATTTGAGAccgcaataaagaaatttacACTCAACGACGAACCCAGAAATACAAACGAAGAATCTAAACTGGATGATACTAAAAATGACACTAGAATAAAAACTGACAAATCTTACACGTATTGGGACTCAAACAGTGGCCAAGAATCCAATTTACTCGTGAAGCGTGAAGCAAAACAAAATTCTGTAAAACCAAAAATAGAAGCTCCTCAACCTTATTCGTGCACGATATGCAATTACAAGTGTAAACTTAAAATAAGCTTAACAGTGCATATGCGAACGCATAAAGACGAAAAGTATTTTTCGTGCAAACTGTGTGATTACAAATCTAAACTCCGCCACAGTATCAACATCCATATGTTGAAACACACGAAGGAAGTTCAGGCATACGCTTGCGACATTTgtgacacaaaaataaaaaacagaaaCAACCTCATCAGACATATGAAAAAACACTACGGGGAGACGCACGCGTGCAACCTATGCGAATATAAGACGCAGAGTAAAAGAAATCTTGCACACCACATGAAACGTCACGTTGGTGACGCAGGGTATTCTTGTCAGCTTTGCGATCGcaggttttttaataaaaaccttttGAAGAGGCACACGTGGTCGCATACACAGGAAAAAGTCTCCAGTAATGCGTTAATAGATACGGGAACCCACTTGAGAATTGCTCGCATCGATGAAGTCTCTAGTAGTGAGTCAAAAGATTTGGGAACCAATATAAGAAATGCGCACAGCGATAAAATATCTATCTATGAGCGAAAAGATCTGGAAACCAACATTGGAAATGTTTGCAGTAATAAAGTATCTATTAGTGAGTCAAAAGATTTGGGAACCCATATGGGAAATACTAGCAGCGATGAAATCTCTAGCTGTGAGTCAAAAGATTTGGGAACCCACACGAGAAATGCTCTAAGCGAAAAGCGTTACGCTTGCGACTTGTGCaatgcaaaattttttatgagaGGCCATTTAAACAGGCACATGTTAACCCACACGGGTGAAAAACCCTTTGTTTGCCCCATATGCGAACAGAGGTTCTCGCAGAAAACCAGTCTACAGAGACACGTGTTAATTCACAAGAAAGAGAAACCATTCTCATGTGACACGTGTCCATATAAATGTGCCTCTAACATCGATATGGTGAAACACAAAAGAACCCACACCGGTGAGAAACCGTACGCTTGCACGTACTGTGACTTCAGATGTAATACGTCCTACAATTTGGTCACACACACAAGGTCGCACACCGGTGAAAAGCCGTTCGCGTGTAAGCTGTGTGTGTACAAGTGCACGCGCACCAGCCAGTTGGTGAGACACATGAGGACACACACCGGTGAGAAGCGATTCACGTGTGTCATATGTGACTATAAGTGCACGCGTCGGTGCAACTTGAGAATGCACATGCGGGTTCACACGGGTGAAATGCTCTCGTGTGACTATTGTGATTATAAGTCTGCGAACAAATACTGTCTTGTTGTTCATATGAAACGGCATATCGCAAAACCCAATGCCAATCTGCATTTATTTGACGactga
Protein Sequence: MSTSSSIMQVCIICLDTESKLYVMNKYNLEKAYENLIGYSMCDNEHVMTKFLCAECMRRLVNFSKFRYKSLRARSVMEELLRNYRELITVDYIKLIDRNVYQLKSDIQKTVFEPNHCDMYIDSSEIDSTFQEVSLKDESLSNEDTHLKLTGLNHDANRQTDFNRIFGDTMVKIEKNLYEDCIDIESDIVNEYNSYDNTNYEVIEDDNLSDSTLVLDTKPTIEELLDQNQNNFIENIQTPDMSSEPNNGCFKEENNHNIEDTKLDNISTKKKKKIQEKLEFETAIKKFTLNDEPRNTNEESKLDDTKNDTRIKTDKSYTYWDSNSGQESNLLVKREAKQNSVKPKIEAPQPYSCTICNYKCKLKISLTVHMRTHKDEKYFSCKLCDYKSKLRHSINIHMLKHTKEVQAYACDICDTKIKNRNNLIRHMKKHYGETHACNLCEYKTQSKRNLAHHMKRHVGDAGYSCQLCDRRFFNKNLLKRHTWSHTQEKVSSNALIDTGTHLRIARIDEVSSSESKDLGTNIRNAHSDKISIYERKDLETNIGNVCSNKVSISESKDLGTHMGNTSSDEISSCESKDLGTHTRNALSEKRYACDLCNAKFFMRGHLNRHMLTHTGEKPFVCPICEQRFSQKTSLQRHVLIHKKEKPFSCDTCPYKCASNIDMVKHKRTHTGEKPYACTYCDFRCNTSYNLVTHTRSHTGEKPFACKLCVYKCTRTSQLVRHMRTHTGEKRFTCVICDYKCTRRCNLRMHMRVHTGEMLSCDYCDYKSANKYCLVVHMKRHIAKPNANLHLFDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -