Hsem016472.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:842301-844692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.19 9.9 7.2 0.6 1 23 5 27 5 27 0.95 2 20 0.071 3.8 8.5 0.5 2 23 55 77 54 77 0.93 3 20 3e-05 0.0016 19.1 2.1 1 23 100 122 100 122 0.95 4 20 0.0088 0.46 11.4 0.6 2 23 127 148 126 148 0.96 5 20 0.017 0.9 10.5 1.5 1 23 153 176 153 176 0.91 6 20 0.053 2.8 8.9 5.4 2 23 186 208 185 208 0.95 7 20 0.0048 0.25 12.2 3.1 1 23 214 237 214 237 0.96 8 20 2.8e-05 0.0015 19.2 3.6 1 23 241 263 241 263 0.98 9 20 0.0001 0.0055 17.4 2.2 1 23 269 291 269 291 0.98 10 20 4.7 2.5e+02 2.8 0.3 1 10 297 306 297 309 0.91 11 20 0.091 4.8 8.2 1.6 1 23 350 372 350 372 0.98 12 20 0.019 1 10.3 3.4 2 23 400 422 399 422 0.90 13 20 0.003 0.16 12.8 2.7 1 23 445 467 445 467 0.98 14 20 0.11 5.7 7.9 0.5 3 23 473 493 472 493 0.96 15 20 0.0023 0.12 13.2 1.3 1 23 498 521 498 521 0.92 16 20 2.5 1.3e+02 3.6 6.0 2 23 531 553 531 553 0.95 17 20 0.00062 0.033 15.0 2.0 1 23 559 582 559 582 0.95 18 20 0.00014 0.0076 17.0 4.4 3 23 588 608 586 608 0.96 19 20 2.6e-05 0.0014 19.3 3.0 1 23 614 636 614 637 0.96 20 20 0.012 0.65 10.9 1.5 1 23 643 665 643 665 0.97
Sequence Information
- Coding Sequence
- ATGGGCTGGAGTTTCAAATGCTTCTACTGTGCACAATATTTTTCTGACGTACCTAAATTGCTAGACCACACATCTGCCCACGAAGTACTCGATAGAGATCTGATTTTAGATAAATACGTTTCGAGAGGTAAACGTACTTTGCAAGTGGACATATCGAGGTTGAAATGTCGGATATGTGACCACGCATATCCAAATCTTGAAGCTGTACGTTCTCATTTGACAAATAAACACGGAAAAGAGTTCTGGCAAGCCAGCAATGGGATGACGGAATACAATATGGAGTCTAAAAATGGGTACTTCCTTTGTCATATTTGCAGCAAAGAATTCGCTTCATTTTCACTGCTTAACTCACACATGAATTCTCATATTGGTAAAGTTGTTTGCGAGAATTGCGGTGCCGCATTCCTAAACCAGCATATGCTGATGAAGCATCGGGAAAAGCATTTGCAAACGGAGTTTAGCTGCCAACAATGCAGTAAGGTGTTCCTCAAGAAGAGCCAGCTGAAGTATCACTCTGACATCGTACATAAAGGAAAAGGGAAAGTAAAAATGAAGAAGTGCAATCATTGCCCTCAAACGTTTAAGGAGCATTACAGTAAAATGGTACACATGAAGTTTGTTCACGGAATCGTAAACACATTTCGATGCCTTATATGCAAAACGAATTTCAACTCGAGACGGACGCTAACAGAGCACACGACCAGATATCACACTGAGAAGTTCAAATGTGAACTGTGTTCTAAATGCTTTAGCATAGAGTCGAAACTAAAACAGCACATGCGAGGGCACACCGGGGAAAGGAACTTCGTGTGTCCAATATGCAAGAACGCATACATGCATAGCATGACTTTAAGGAAACATATGAAAACGCATGAGCCAGTTTATAAATTCACCTGCTCTGAATGTCCAACGGGCTTTGGCATGCCACCCAAAGAACTCCCTACGAGCAGTAAATGGTCCATGACTTTGGCAGAAAGAAAGAATGCAGCACTGCTCTTACAGTACACCACAGTGACGCCATTTATCTACCTTTTATACCCGAGCTCCTTCAAATGTCTTTTCTGCGAGGAAAAGTACACAGAACTCCAAACGCTTTTGGAGCATTCCAGAAAACACGATGTCCTAGAACACGACAAGATTTTGAAGGACATTTTGAAGAAAGGCAAAAAGAATATCAAAGTTGACATATCGGGTTTGGAATGTAGGATATGCCACAAGTCGTTTACAAGTTTGGAGTGTATTCAAACACACCTAACTGATAGCCATAACAAAGTTTTTACTAGCGCAGGGAGTGGTATGCTTGAATTCAACTTGAAAATGGCTAACGAACTGTTCTCGTGCCACATTTGTTCTAACGCGTTCCAGAGCTTCTTCCTACTCAATAAACACATGAGTGTCCATTACAGAAATGCGATGTGCGATTCCTGCGGGAAAGGGTTCCTGTCTTACCAAAGACTGATGACCCATATGGAAAGCCATAAAAACGGGTCGTATCCGTGCGAGAAATGCAAGAAAATCTTCCCAAGCATCTCCACACTGAAGTACCACAACGACAAGTTCCACGGAACGCGAGGCCAGAAGAAGCTTGCCAAATGCCACAAATGTTTGGAGCGATTCGAGCACCATTACGAGAAGATAAACCATTTGAAGGAGGCGCACGGCGTTTCGTTCACCTTCGCTTGCGACACGTGCGATCTGACGTTCAAGACGAGGCACTCTCTGAGCTTGCACGTCATAAAGTATCACACGCGGAATATAATCTGCGAGATATGCAGGAAGACCTTCGCAGAGCGATGCCACCTGAGAAAGCATATGACGACGCATACCCAAGAAAGGAACTACGTGTGTCCGATATGCAAGAAGAGCTACAGACAAGACAAGACGCTGAAACTGCACTTGAAAAGCCATCATAATCCCGACTGGAGGTTCTTCTGCGGCGTTTGCTGGTCCGGCTTCACGACCAGACTTGAGTACAAGAAACATAGACAGACTCATTTGTag
- Protein Sequence
- MGWSFKCFYCAQYFSDVPKLLDHTSAHEVLDRDLILDKYVSRGKRTLQVDISRLKCRICDHAYPNLEAVRSHLTNKHGKEFWQASNGMTEYNMESKNGYFLCHICSKEFASFSLLNSHMNSHIGKVVCENCGAAFLNQHMLMKHREKHLQTEFSCQQCSKVFLKKSQLKYHSDIVHKGKGKVKMKKCNHCPQTFKEHYSKMVHMKFVHGIVNTFRCLICKTNFNSRRTLTEHTTRYHTEKFKCELCSKCFSIESKLKQHMRGHTGERNFVCPICKNAYMHSMTLRKHMKTHEPVYKFTCSECPTGFGMPPKELPTSSKWSMTLAERKNAALLLQYTTVTPFIYLLYPSSFKCLFCEEKYTELQTLLEHSRKHDVLEHDKILKDILKKGKKNIKVDISGLECRICHKSFTSLECIQTHLTDSHNKVFTSAGSGMLEFNLKMANELFSCHICSNAFQSFFLLNKHMSVHYRNAMCDSCGKGFLSYQRLMTHMESHKNGSYPCEKCKKIFPSISTLKYHNDKFHGTRGQKKLAKCHKCLERFEHHYEKINHLKEAHGVSFTFACDTCDLTFKTRHSLSLHVIKYHTRNIICEICRKTFAERCHLRKHMTTHTQERNYVCPICKKSYRQDKTLKLHLKSHHNPDWRFFCGVCWSGFTTRLEYKKHRQTHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -