Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000184.1:8476971-8492649[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.35 18 6.3 0.0 1 23 181 203 181 203 0.98

2 12 0.26 14 6.7 2.7 1 23 210 232 210 232 0.97

3 12 0.0093 0.49 11.3 0.2 1 23 236 259 236 259 0.95

4 12 4.4e-07 2.3e-05 24.9 0.8 1 23 264 287 264 287 0.95

5 12 0.089 4.7 8.2 2.3 2 23 294 315 293 315 0.96

6 12 5.6e-06 0.0003 21.4 0.9 3 23 329 349 327 349 0.95

7 12 0.00017 0.0089 16.8 4.2 2 23 356 377 356 378 0.95

8 12 0.00091 0.048 14.5 0.2 2 23 390 412 389 412 0.95

9 12 0.00039 0.02 15.6 2.3 1 23 419 442 419 442 0.95

10 12 0.0023 0.12 13.2 0.2 6 23 452 470 451 470 0.97

11 12 4.5e-05 0.0024 18.6 0.7 2 23 480 501 479 501 0.97

12 12 9e-06 0.00047 20.8 1.4 1 23 506 529 506 529 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.35	18	6.3	0.0	1	23	181	203	181	203	0.98
2	12	0.26	14	6.7	2.7	1	23	210	232	210	232	0.97
3	12	0.0093	0.49	11.3	0.2	1	23	236	259	236	259	0.95
4	12	4.4e-07	2.3e-05	24.9	0.8	1	23	264	287	264	287	0.95
5	12	0.089	4.7	8.2	2.3	2	23	294	315	293	315	0.96
6	12	5.6e-06	0.0003	21.4	0.9	3	23	329	349	327	349	0.95
7	12	0.00017	0.0089	16.8	4.2	2	23	356	377	356	378	0.95
8	12	0.00091	0.048	14.5	0.2	2	23	390	412	389	412	0.95
9	12	0.00039	0.02	15.6	2.3	1	23	419	442	419	442	0.95
10	12	0.0023	0.12	13.2	0.2	6	23	452	470	451	470	0.97
11	12	4.5e-05	0.0024	18.6	0.7	2	23	480	501	479	501	0.97
12	12	9e-06	0.00047	20.8	1.4	1	23	506	529	506	529	0.97

Sequence Information

Coding Sequence: ATGTCTACCGAAATACAAATAAAGGTTGAGCCTGAAGAGCCAGAAAATGAAAATGATGGAATGGATCCAAATTGGAACATGGAACAACCTGGATGCTCCGTTAATCCAGTGTTTAGTGATCACTTTGTTGGAATTAAACAGGAGTTCCCAGAAGTGAATATTAAATTGGAGCCTGTAGATGACGCGGATGATGCATTCGAGAGGAGTGATATGGACCCAGAGACTGTGTTGATGAAACTGGAGCATCACATGTATGAAAGTAATGAAACAATTAAATTACCGCGGGCTAGAATTGTGAATTATAAAGAGGAAGATTCAGACGAAGAGTATCTACCTCACACAAAGACTATCAAAAAAAGCCAAAAGaaatttCAAAAGTTCGAGCCAAATGTCAAACCTTCAATCAGAGGTCGACctaaaaGAGACGAGCAGTCCTACTCTGAGGAGATAACCGCTCACATAGAAATAGTGACCATAGACGAGCCGGCCCGGCAGGCTGAATTCCGCGATGCGCTGTCGAATCGCAAACACAGTATGAACTACACTTGCGACATGTGCGCGGTCGGGTTCGTTATTCAAGAGGCTTATGACATGCACCTGAAGATGCATTCGCCGGAAGCAGGGGATCACGAGTGTGACATATGCAAACTCCGTTTAAAAACTCAGGACATGCAGTATCAGCACAGACTACGTCACTACCGGCGCTATCGGTGTACAATATGTCAGTTTATGTCAAAGGATAAGGATACAATCGCGGCACATATCATGGGTCAGCATGAAGGAACTGCGTTTGCATGTCAGTATTGCGGACGAAGCTTTAAACGGCCGGCTTACCTCAGTCGACACATTAAGCAGATGCACACCAAGCCCTTGCAGCTGGAGTGCCCCGTCTGCCAGCGCGTGTTCCACGAGAGGGGCTGGTACCGCTGTCATGTGAGAACTCACAACGAGGAAGTGAAAAATAGTGTAACCAGGAAAGTGATCTGCGCGCACTGCGGCCGCGAGTTCCGCAACAAGTCGTACCTGATCCGGCACCTGTTCGTGCACGAGGACAAGCGGCCCGCCACCTGCAAGCAGTGCGACAGGACCTTCAAGAACAGCGAGGTGCTGCGCGTGCACCGGCGGCAGCACCACGGAGACAAGCCCGCGCGGTTCAGCGCGGACACCACGTGCTTGGTGTGCGGTCGCATCCTCACCACGCCCGCCATGCTCACGCGGCACACGCTGCGCATGCATACTGAGCGGATCAAGAAGTTCCAGTGCGACTACTGCCAGAAGTGCTACTACTCGAAGGCGGAGGTGCGCTCGCACATCGAGTGGACGCACCTGCAGCGGCGGCGCCACGCGTGCGCGTGCGGCCGCGTGTTCCGCTCGCCCGCGCTGCTGCAGCACCACGCGCTCACGCGCCACCTCAACGTGCAGCAGCCCAAGGACAAGCGCTGCCCCGTCTGCAGCAAGATGTTTGCGAATCAACAAGTGCTGACGCGACACGTGAAAAGTCATTCGGGAGAGACCTACCCGTGTACCGAATGCGGACAGAAGTTCAAAACTCAGTCGTACGTCAAAGTGCACTACAAAATAAAGCATCTCAACATGACGCGAGCTCAAGTCAAAGCGCAGAGTAGAAGAAAACTGATCATGGTCCATGCTGAAGAACCGATGAgtgcgagaattaaaaaaagcaaaaaatctCTAAATAACACTGCGGATCCATTGAatttagaaaattttattaGTGAAAAGGATGTTGTGAATGTAAAGAAAGAGGTTATTGATCCACCGGTGCCGCTATTTGAAACTTTCGTCGATATACAACGGGAATGTTGA
Protein Sequence: MSTEIQIKVEPEEPENENDGMDPNWNMEQPGCSVNPVFSDHFVGIKQEFPEVNIKLEPVDDADDAFERSDMDPETVLMKLEHHMYESNETIKLPRARIVNYKEEDSDEEYLPHTKTIKKSQKKFQKFEPNVKPSIRGRPKRDEQSYSEEITAHIEIVTIDEPARQAEFRDALSNRKHSMNYTCDMCAVGFVIQEAYDMHLKMHSPEAGDHECDICKLRLKTQDMQYQHRLRHYRRYRCTICQFMSKDKDTIAAHIMGQHEGTAFACQYCGRSFKRPAYLSRHIKQMHTKPLQLECPVCQRVFHERGWYRCHVRTHNEEVKNSVTRKVICAHCGREFRNKSYLIRHLFVHEDKRPATCKQCDRTFKNSEVLRVHRRQHHGDKPARFSADTTCLVCGRILTTPAMLTRHTLRMHTERIKKFQCDYCQKCYYSKAEVRSHIEWTHLQRRRHACACGRVFRSPALLQHHALTRHLNVQQPKDKRCPVCSKMFANQQVLTRHVKSHSGETYPCTECGQKFKTQSYVKVHYKIKHLNMTRAQVKAQSRRKLIMVHAEEPMSARIKKSKKSLNNTADPLNLENFISEKDVVNVKKEVIDPPVPLFETFVDIQREC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092312;
90% Identity: -
80% Identity: -