Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000182.1:847505-850583[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.15 7.9 7.5 0.3 1 23 132 155 132 155 0.96

2 12 0.1 5.5 8.0 0.1 1 23 226 248 226 248 0.96

3 12 0.00032 0.017 15.9 0.2 1 23 252 274 252 274 0.98

4 12 0.0015 0.081 13.8 0.8 1 23 279 302 279 302 0.95

5 12 0.012 0.62 11.0 0.3 2 23 309 331 309 331 0.92

6 12 1.6e-05 0.00087 20.0 0.4 1 23 427 449 427 449 0.98

7 12 5.5e-06 0.00029 21.4 0.9 1 23 453 475 453 475 0.99

8 12 1.8e-05 0.00098 19.8 0.2 1 23 480 503 480 503 0.96

9 12 5e-05 0.0027 18.4 0.4 2 23 510 532 510 532 0.97

10 12 5.1e-05 0.0027 18.4 0.4 1 23 539 562 539 562 0.98

11 12 0.0057 0.3 12.0 4.6 2 23 569 590 568 590 0.97

12 12 9.7e-08 5.1e-06 27.0 0.9 1 23 596 618 596 618 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.15	7.9	7.5	0.3	1	23	132	155	132	155	0.96
2	12	0.1	5.5	8.0	0.1	1	23	226	248	226	248	0.96
3	12	0.00032	0.017	15.9	0.2	1	23	252	274	252	274	0.98
4	12	0.0015	0.081	13.8	0.8	1	23	279	302	279	302	0.95
5	12	0.012	0.62	11.0	0.3	2	23	309	331	309	331	0.92
6	12	1.6e-05	0.00087	20.0	0.4	1	23	427	449	427	449	0.98
7	12	5.5e-06	0.00029	21.4	0.9	1	23	453	475	453	475	0.99
8	12	1.8e-05	0.00098	19.8	0.2	1	23	480	503	480	503	0.96
9	12	5e-05	0.0027	18.4	0.4	2	23	510	532	510	532	0.97
10	12	5.1e-05	0.0027	18.4	0.4	1	23	539	562	539	562	0.98
11	12	0.0057	0.3	12.0	4.6	2	23	569	590	568	590	0.97
12	12	9.7e-08	5.1e-06	27.0	0.9	1	23	596	618	596	618	0.99

Sequence Information

Coding Sequence: ATGTACAACATAGTGGTCCGAAAGTACAAAGATTTGTTTCTGTTTTTAGGCACGGATTCTTTACCGACGGATAGACCGACGCCGAACAGACGAATAGTTCCTCTATTCCAAGTGGCCTACGATCGGAGCCTCTGTAAACCTTTGGGAACTGTGACAGCCTTCAGGAAGTTGAGATTAAAGGAACAGATCAGAATACCTTCTCCTTCAGTGAGAGATTATACACCCTCTCGGAGTCCATCGCCGATGCCTATGAACCAGAGGGAACCATCTCCAGTTAAAGTTCCTCGAATATTAAAAGTTATATCAACCAAAAAACACTCGGACTATCGACAAAACGCTTTAACGGTTTTCGAATTTTCAACGGTTTACCCATTTGTGTATGGCAACAATAAATTCAAATGTTTCGTTTGCGCTGAACCATTTCTGGAAACTTCACTTTTAAGACAACATATGAATGAAAACCATACATTTGCGCCGTTAAAACGGTTAGTAAATAATAGAAGGGAAAATGTCCTGAAAGTAGATGTTGGGGAACTGGAATGTAAGTTATGCTCAGTGAAGCCAAAAGATCTGTTACAGTTAAAGTATCATCTGAAAGAAGATCATCAGAAGCCTATAGACCCAGAACTACAAGACAATATGATACCGTTTAAGCTAGAAGAAGAGGACGGAGCGTATAAGTGCGTTATGTGCGAGGAGACGTTTATAAAAGTTCGCATTTTAGTTATCCACATGAGTGTACATTTTAGTAACTACAGTTGCGAAATATGCGGATCGGGCTTCATGACTTTACGACTATTGAAGAAACATCTAGAAGTGCACGAGACAGGGAATTTCCCATGTGACAGATGCAACAAAGTTTTCAGCACAACCTACAAAAGATCTTTACATATACGAGGAGTCCATCTAAAGCAATATCCAAGGAGATGTCCAATTTGTCCGGAACGATTCAACTCGAATTATAGAAGAACAATTCATCTTCAAGACGTCCACAATCAGTCCACAAGGGTTCACAAATGCATCGTCATAGAAACTGATTCATCGATAGTCGTTAAGGATAATGATGGAACTGAAATCAAACTTACAATACTCAAGAATCCAATAAACATCGAAGATCTGGTTTGTGAAAACGAAGATAGGGAAGTACTACAAAATAAGGACATGATGATAAAAGATACTGACGTGAATAAAACTAAAAAGCTTAAGAAATGTCATGATAAGAAAATCGACCCAGAATTCAAGGACGACTTGATCCCCTTCAAATTATCAGGCGATGATTTCCAATGTCAAATATGCGACGAAACGTTTGTCAAACTCCGTTTATTAATAATCCACATGAGCAAACACTTCAACAACTATAGCTGCGAGACTTGTGGTGCTGTTTTCGTGTCTCTACATTTGCTTAGGAGGCATTTGCAAACGCACAAAATTGGGAATTTCCCTTGTGAAGTGTGTGATAAGGTTTTCAGTAATTCCGCGAAAAGGACTATGCACATGCGTGGGGTACATCTGAAACAGTGTCCAAGGACTTGTCCGATTTGCCCCGAAAGATTCAACTCGAACTACCAAAGGACGAAACACTTGCGTATCGTCCACAACCAAACTTCTGGTTTGTTTAAATGCGAAACCTGTGGGAGGGAGTACGACTTGAAGTATCAACTGCTCGTTCATATAAGATCTGTTCACATGCAAGAGAGAAATCAGGAGTGTGGTATTTGCCATTCGAGGTTCTTCTCAAAGTACTGCCTGTCAAGGCACATGATGATTCATACAGGAGAGAAGAACTTTAAGTGCGAGGTATGCGGGAAGGCTTACGCGCGGAGGAAGAATTTAAAGGAGCACATGAAGTCCCATGAAAATGGACAAATGTGTTCAGTTTGTTGCCAAGATTGTGGAGATCATGCTTCATTGGCTGTTCATATGGGCCATTCGCATGGACTAGCCTTATAG
Protein Sequence: MYNIVVRKYKDLFLFLGTDSLPTDRPTPNRRIVPLFQVAYDRSLCKPLGTVTAFRKLRLKEQIRIPSPSVRDYTPSRSPSPMPMNQREPSPVKVPRILKVISTKKHSDYRQNALTVFEFSTVYPFVYGNNKFKCFVCAEPFLETSLLRQHMNENHTFAPLKRLVNNRRENVLKVDVGELECKLCSVKPKDLLQLKYHLKEDHQKPIDPELQDNMIPFKLEEEDGAYKCVMCEETFIKVRILVIHMSVHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFPCDRCNKVFSTTYKRSLHIRGVHLKQYPRRCPICPERFNSNYRRTIHLQDVHNQSTRVHKCIVIETDSSIVVKDNDGTEIKLTILKNPINIEDLVCENEDREVLQNKDMMIKDTDVNKTKKLKKCHDKKIDPEFKDDLIPFKLSGDDFQCQICDETFVKLRLLIIHMSKHFNNYSCETCGAVFVSLHLLRRHLQTHKIGNFPCEVCDKVFSNSAKRTMHMRGVHLKQCPRTCPICPERFNSNYQRTKHLRIVHNQTSGLFKCETCGREYDLKYQLLVHIRSVHMQERNQECGICHSRFFSKYCLSRHMMIHTGEKNFKCEVCGKAYARRKNLKEHMKSHENGQMCSVCCQDCGDHASLAVHMGHSHGLAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -