Hsem016431.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- RGM1
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:702792-705760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0046 0.24 12.2 2.7 1 23 64 87 64 87 0.97 2 18 0.0056 0.3 12.0 0.2 2 23 115 137 114 137 0.95 3 18 0.1 5.4 8.0 1.0 2 23 160 181 159 181 0.97 4 18 0.0053 0.28 12.1 1.0 1 23 185 207 185 207 0.98 5 18 0.0081 0.43 11.5 2.0 1 23 212 235 212 235 0.91 6 18 0.069 3.6 8.5 1.0 2 23 243 265 242 265 0.96 7 18 0.00011 0.006 17.3 1.9 2 23 273 295 273 295 0.95 8 18 0.00039 0.021 15.6 0.6 1 23 301 323 301 323 0.98 9 18 0.035 1.8 9.5 1.4 1 21 329 349 329 350 0.97 10 18 6.6 3.5e+02 2.3 0.3 1 23 433 456 433 456 0.92 11 18 0.57 30 5.7 0.1 2 23 481 503 480 503 0.94 12 18 0.0043 0.23 12.3 1.5 2 23 526 547 525 547 0.97 13 18 0.00054 0.028 15.2 0.1 1 23 551 573 551 573 0.98 14 18 0.0012 0.063 14.1 0.7 1 23 578 601 578 601 0.97 15 18 2.4 1.3e+02 3.7 3.8 2 23 609 631 609 631 0.89 16 18 2.7e-06 0.00014 22.4 4.8 1 23 638 661 638 661 0.98 17 18 0.00021 0.011 16.5 0.8 2 23 668 689 667 689 0.97 18 18 6.9e-07 3.6e-05 24.3 2.1 1 23 695 717 695 717 0.98
Sequence Information
- Coding Sequence
- ATgtccaaaaaaattaaaaccaccGTTGTTAAAATACCGAACATTCGCTACATAAGTGTAATCAAGGGCCTATCGGACATGGTTAGAACAACTGTTACAAATTCCGAGAAAAGCAAACATTGCAACAATTTTGAAGTTGTTGTAGCCAATTCAAATGCAACGCCGATTCGGAGCCAGGACGGTTTCGCATATACGTGTTGCTTTTGTTCAGAACAGTATACAAATCCAGCAGATCTCAAAACTCATACGCTGATGAAACACGATAACACTCGCGAAAGACGGGGCTACATGAAAAAGCAAACCTCTAGTGGTTATTTACTCAAGCTCGATATTACTCTGTTGAAGTGTAAAGTATGTGATCGAAGCATTGATACATTGGAAGAATTGTTCGACCATTTGCAGAACGAGCACAAAAAGCTTATCTACACGGATATAAAGAACCAGATTATCCCGTTCAAATTCGGCGGTGACGATCTCAAATGCGCCATGTGTCCTCTCGTATTCAGCAAATTCAAAATTCTCCTAGAGCACATGCACACGCACTACAAAAACTACGTTTGTGAAATTTGCGACTACGGGTGTATTAACCGCAGGGTGATGTTAAACCACCAAAGATCACACAAAACTGGCTCCTTCGAATGCAGCAAATGCAATAAAGTCTTCGCCACTCAACAGAGGAGAACGGCCCACGAGCATTCAGTTCACAAGTACATGAACAAGCCGAACAAATGCGGGGTCTGCAACGAGAGATTCAAGAGCACCCAAATGAAGGACCAGCACATGATCACCATGCACGGAATGTCGCCAGTGATTCGAAAATGTTTGGCCTGCGACAAAACTTTCACAAGCCAAAGCTCGTTACGGATACACAAGCAGAAGTATCATCTGATGGAAAGACGTTTTCCGTGCACGGAGTGCGATATGAATTTCTTTACGGGAGCTCAACTGAAATACCACATGTTGAAGCACACGGGCAAGAAGGATTTCCAGTGTGACGTCTGCCTGAAGTGGTTTACTAGGAAGTGCGTTTTGCGCGAGCACATGCGTCTCAATCAGCAAATAACCATCTTTACTGGAGACAGAGCGGACAAAGTCCTTCACGATATACAAGAGTCGAGCATAAGTGgcgtttttgagaaaaatggTTTTGAGAGAAAGAATCATAAAGGTATAAGAAGGAATCAAAAAGATTTTGACGCGATATGCGTTCAAGAAGTTGAAAAGCATCGGAAAAATTTGCTAGAAGTGTTAGTGAACTCTAACGCGACACCGATTAAGCATCGAACTGATCTGGGCTATAAGTGTTTCTTCTGCAGCGACCAATATATTTTAGCAGCTGATTTAAAACTGCACACATTGCAAGCACATGACGAGGACGCATTGAAACGTGTCATTCAGGATTTGAGGATATATACCGTGAAACTTGATATAACATCTTTACAATGTGCTATTTGTCAGAGTGACGTGTCCACAGTAGAACATTTGATGGAGCATTTGATGGAAGATCACAATAGAACAATATACACAGATATAAAGAATCACATGATACCTTTCAAATTTAAAGGCGACGATCTCGTATGCGCCATTTGCTCGCTCAAATGTTCCACGTTTAGGCTTTTAACAGAACACATGAACACTCATTACAGAAATTACGTTTGCGATTTCTGCGGCGTCGGTTTCGTCAACCGAGACATTCTACGGAGTCATCAGAGGATACATAAGACGGGGACGTTCACATGCGACTTGTGCCCCAAAACATTTGACACGCGCGTCAAGAAAACGTATCACATCAACGTAGTGCACAAGAAGTCGGGCTTGACGCGAAAGTGCGGGTACTGCCATGAAGCATTCATCGATTACCACAAGAAAATGGATCATTTGTATCACGTACATGGTGTCAAGCTGATAGAGTTTAAGTGTAAAGTCTGCGACAAAGCGTACAAGAAGCATACGAATTTAAGAAACCATATGAGGAAGGACCATTTAATGGAGAGGGAGGTCGAATGCGATATATGTCAAATGAGATTTTTCGCTAAGAAAGATTTGAAAAGACATATGCTAAGACACACCAAGCAACGTGACTTCCACTGTGAACTGTGCGGGAAAGCTTTCGCTAGGAATTTTACCCTAAAGCAGCACATGCGTGTGCATACTAAAGAGCGTCGAAGGGTGAGGAGAGAATCATCTCCGCAATATTTGGTCATCATGGAGTCGGATGCTGAAGGAGCAGATCAGTGA
- Protein Sequence
- MSKKIKTTVVKIPNIRYISVIKGLSDMVRTTVTNSEKSKHCNNFEVVVANSNATPIRSQDGFAYTCCFCSEQYTNPADLKTHTLMKHDNTRERRGYMKKQTSSGYLLKLDITLLKCKVCDRSIDTLEELFDHLQNEHKKLIYTDIKNQIIPFKFGGDDLKCAMCPLVFSKFKILLEHMHTHYKNYVCEICDYGCINRRVMLNHQRSHKTGSFECSKCNKVFATQQRRTAHEHSVHKYMNKPNKCGVCNERFKSTQMKDQHMITMHGMSPVIRKCLACDKTFTSQSSLRIHKQKYHLMERRFPCTECDMNFFTGAQLKYHMLKHTGKKDFQCDVCLKWFTRKCVLREHMRLNQQITIFTGDRADKVLHDIQESSISGVFEKNGFERKNHKGIRRNQKDFDAICVQEVEKHRKNLLEVLVNSNATPIKHRTDLGYKCFFCSDQYILAADLKLHTLQAHDEDALKRVIQDLRIYTVKLDITSLQCAICQSDVSTVEHLMEHLMEDHNRTIYTDIKNHMIPFKFKGDDLVCAICSLKCSTFRLLTEHMNTHYRNYVCDFCGVGFVNRDILRSHQRIHKTGTFTCDLCPKTFDTRVKKTYHINVVHKKSGLTRKCGYCHEAFIDYHKKMDHLYHVHGVKLIEFKCKVCDKAYKKHTNLRNHMRKDHLMEREVECDICQMRFFAKKDLKRHMLRHTKQRDFHCELCGKAFARNFTLKQHMRVHTKERRRVRRESSPQYLVIMESDAEGADQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01092295;
- 90% Identity
- -
- 80% Identity
- -