Hsem016463.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:792572-797341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.11 5.6 8.0 3.8 1 23 33 56 33 56 0.95 2 19 8.4e-05 0.0045 17.7 1.3 2 23 63 85 63 85 0.94 3 19 0.017 0.91 10.4 1.0 1 23 91 114 91 114 0.94 4 19 0.042 2.2 9.2 1.5 1 23 120 142 120 142 0.97 5 19 2.3e-05 0.0012 19.5 1.5 1 23 148 170 148 170 0.99 6 19 1.3 67 4.6 0.1 3 14 178 189 177 191 0.89 7 19 0.004 0.21 12.4 2.4 1 23 210 233 210 233 0.98 8 19 0.012 0.63 10.9 2.9 1 23 257 280 257 280 0.97 9 19 0.012 0.63 11.0 0.5 1 23 286 309 286 309 0.93 10 19 0.0039 0.21 12.5 2.5 1 23 315 338 315 338 0.96 11 19 0.11 6 7.9 1.1 2 23 345 367 344 367 0.96 12 19 2.7e-05 0.0014 19.3 0.9 2 23 374 395 373 395 0.97 13 19 8.8e-05 0.0046 17.7 0.3 3 23 403 424 402 424 0.96 14 19 0.00086 0.046 14.5 1.6 2 23 509 531 508 531 0.96 15 19 0.15 8 7.5 1.5 1 23 537 560 537 560 0.90 16 19 0.002 0.1 13.4 3.7 3 23 568 589 566 589 0.94 17 19 3.5 1.9e+02 3.2 2.1 1 23 595 617 595 617 0.89 18 19 4.2e-05 0.0022 18.7 1.1 1 23 623 645 623 645 0.99 19 19 9e-06 0.00048 20.8 0.3 2 23 652 674 651 674 0.96
Sequence Information
- Coding Sequence
- ATGAAACATTTCGACGAACTCAAACTCCTCAACACCGAGAGTGGGAAATACAAGAAGGTCCAAATCGGGAAGGATTACATCAGGGATGGCGACAAATTCCTCTGCGCCCATTGCCTAAAGAGATACAGTAAAAAGGACCCAATGCACATGCACATACGGACGGATCATTATGGTTTATACAGAAATAGATGTTCGATTTGCGACAAGGGTTTCAAGAAAAAATACCAGCTTACGATCCACAACCTTAAGGAACATAACGTGGACGAAAGGCACGAGTGCAAAGCTTGCGATAAAAAATTCAACACGAGCTATATTCTCGCGGAACACGTCCAAGTTTTCCACATGCAGGGCGAGAAGCACGAGTGCCCTTCTTGCGATTTCGAAACCTATAGATTACAGTATATGAAGGTGCATATGGATACGCATAAGAAGGAAAGGGACTATAAATGTGGGTTTTGTAAAAAGGCTTTCGTCAGGCTTAAGACGCTGCAGCAGCACGAGCGAATACATAAGGGCGACAAGCGCAAAATATGCAAAGTTTGCGATATGGCGTTCGTGCAAAAAGCGAGCACGCTCTTTGTTGAACGCGAGAAGGATTACAGGATCCTTCCTGAATGCGACGACCGCTACCGCTGCGCCCACTGCAACGAGTCCTACGAAAAAATTAAAGCCCTATTCTACCACATACGTAGCAAACACTCCAGTGTACTCAAACGCGAACCCAAGAAGGTCAAATACGGCGAGGATTATACCATGGATGGCGACAAATTCATCTGTGGCCATTGCGAAAAGACTTACAATAAAAAGCCCCCGATGCATAGGCACGTACGTATGGATCACTACGGTATATACAGTTTCAAATGCACAGTTTGTGACGCGGGCTTCAAGCACGAGGCGCAGATTATGATCCACAAGTTACAGGAACATAACTTGGACGAAAGGTTTGAGTGCAGGGCTTGCAGTAAAAAGTTCAACTCGTGGAGATCTCTCTGCGAACACGTCCAAATTTTCCACATGCAGGGCGTGAAGCAAAAGTGTCCTTCTTGCGACTTTGAAACATACAAATTAGCAAGTTACAGAACGCATATGAAGTATTCGCATAAGACGGACAGAAACTTAAAATGCGGGTTTTGTAAAAAGGCTTTCGCCAGATTGTCCACGCTGCGGCAGCACGAGCGGATACATAAGGGCGACAAGCGTAAAATATGCAAAGTTTGCGATATGGCGTTCGTGCAAAAAGCGAGTTTAAACTACCACATGTCCAAGTACCATCCTGaaATTATTATAGCATTCTTCGTCTCAATCGGTCAATCTTGTCAGTGTGGCCGTGGCCGCGATGCGATATTAGTCGTCGTCGGTCTTCTTAGTTTTGGGTCGCACCGCCTCCCGCGCGACGCTCCTCCACTTTTGACGGTTGTAGCATTGCGGGAGCACTCCACCACTTGTCTGGGCCACAAATCGGCGGCAAAACGGCGTATGTTCCGCCTGCGGCCAGACGATTGCAGGGCTGAGGGTGACCGTTTGGTATGTGGCCACTGCGACAAATCTTATGAGAAACTCGTCTCCCTAAGATACCACCTAAAGAGCAAGCACTACAACATCCCAAAACACGTTTGCCCCATTTGCGACAAGCAGTGCTTGACGACCAGCGCGTTCACCATACACAAGCTCGAGGCTCACAATATAGACGACAGAAGCCACTGCAATGCTTGCAAGAAGTCTTACAACACCAAGATCCAACTGCGCAAGCACATCAACAACTTCCACATGCTCGGCGAAAGGTACCAATGCCCGTTGTGCGAATACCAGTCGTTCAGCTTCGAAGGTATGTACAAGCACAAGTATAAACATAAGACGGAGAAGGATTACCAGTGCAGCTTCTGCAGGAAGGCGTTTGTGAGGAAGACGACCTTGGCCCTGCATGAAAGGATACACACCGGAGACAGAAGGAAGGTTTGCCAGATATGTGGCCAAGCGTTCGTGCAAAAGGCTAGTCTGAACTACCACATGAACAAGTACCATCCCGGTGTcagttactaa
- Protein Sequence
- MKHFDELKLLNTESGKYKKVQIGKDYIRDGDKFLCAHCLKRYSKKDPMHMHIRTDHYGLYRNRCSICDKGFKKKYQLTIHNLKEHNVDERHECKACDKKFNTSYILAEHVQVFHMQGEKHECPSCDFETYRLQYMKVHMDTHKKERDYKCGFCKKAFVRLKTLQQHERIHKGDKRKICKVCDMAFVQKASTLFVEREKDYRILPECDDRYRCAHCNESYEKIKALFYHIRSKHSSVLKREPKKVKYGEDYTMDGDKFICGHCEKTYNKKPPMHRHVRMDHYGIYSFKCTVCDAGFKHEAQIMIHKLQEHNLDERFECRACSKKFNSWRSLCEHVQIFHMQGVKQKCPSCDFETYKLASYRTHMKYSHKTDRNLKCGFCKKAFARLSTLRQHERIHKGDKRKICKVCDMAFVQKASLNYHMSKYHPEIIIAFFVSIGQSCQCGRGRDAILVVVGLLSFGSHRLPRDAPPLLTVVALREHSTTCLGHKSAAKRRMFRLRPDDCRAEGDRLVCGHCDKSYEKLVSLRYHLKSKHYNIPKHVCPICDKQCLTTSAFTIHKLEAHNIDDRSHCNACKKSYNTKIQLRKHINNFHMLGERYQCPLCEYQSFSFEGMYKHKYKHKTEKDYQCSFCRKAFVRKTTLALHERIHTGDRRKVCQICGQAFVQKASLNYHMNKYHPGVSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -