Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000175.1:1265178-1276396[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.1e-06 0.00048 20.8 0.8 2 23 222 243 221 243 0.97

2 13 2.4 1.3e+02 3.7 8.7 1 23 251 273 251 273 0.98

3 13 0.0042 0.22 12.4 1.3 2 23 299 320 298 320 0.96

4 13 0.0012 0.061 14.1 2.6 1 23 343 365 343 365 0.99

5 13 0.0011 0.057 14.2 3.2 1 23 373 396 373 396 0.91

6 13 1.4e-05 0.00072 20.2 1.4 1 23 402 424 402 424 0.97

7 13 0.0012 0.065 14.0 1.5 1 23 430 452 430 452 0.98

8 13 6.7e-07 3.5e-05 24.3 2.7 3 23 460 480 458 480 0.96

9 13 2e-05 0.0011 19.7 0.2 1 23 486 508 486 508 0.99

10 13 3.5e-07 1.8e-05 25.2 0.7 1 23 514 536 514 536 0.98

11 13 8e-05 0.0042 17.8 0.7 1 23 542 564 542 564 0.98

12 13 8.1e-05 0.0043 17.8 4.1 1 21 570 590 570 592 0.96

13 13 0.00011 0.0058 17.4 0.7 1 23 598 620 598 620 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.1e-06	0.00048	20.8	0.8	2	23	222	243	221	243	0.97
2	13	2.4	1.3e+02	3.7	8.7	1	23	251	273	251	273	0.98
3	13	0.0042	0.22	12.4	1.3	2	23	299	320	298	320	0.96
4	13	0.0012	0.061	14.1	2.6	1	23	343	365	343	365	0.99
5	13	0.0011	0.057	14.2	3.2	1	23	373	396	373	396	0.91
6	13	1.4e-05	0.00072	20.2	1.4	1	23	402	424	402	424	0.97
7	13	0.0012	0.065	14.0	1.5	1	23	430	452	430	452	0.98
8	13	6.7e-07	3.5e-05	24.3	2.7	3	23	460	480	458	480	0.96
9	13	2e-05	0.0011	19.7	0.2	1	23	486	508	486	508	0.99
10	13	3.5e-07	1.8e-05	25.2	0.7	1	23	514	536	514	536	0.98
11	13	8e-05	0.0042	17.8	0.7	1	23	542	564	542	564	0.98
12	13	8.1e-05	0.0043	17.8	4.1	1	21	570	590	570	592	0.96
13	13	0.00011	0.0058	17.4	0.7	1	23	598	620	598	620	0.96

Sequence Information

Coding Sequence: ATGGATAATGTGTTACGGAGAATCATATGTAGGACTTGTCTTACCGAGGCTCATGGGTATAAGTCTTTACTGAGCAAAATGGACGGCGACGATCGGACAATACGAGAAGTTCTATCAAATTTTATCAATGTGGACATATCACTGAACGATAAATATCCCAAACAGGTCTGCGATGAGTGCTATACAATGATATTCAAGGCTGATCAGTTCAAAAAGAGATGTTTACAGTCTGaaactatattaaaaaatgGTTTTCTCTCTCATACTTTCGAAGAGTTGATCAAACGCGAAATTGATAGTTCAGAGCATTTAAATGTCGTTAATCCACACACAAGCACCCAAATCACTAACAAGAGTTACTTTGAGAATTGTTTAAAAAAGAATCGCTCGGTTTCAACAGCTATAGAGATGGCGTTtgtagataattattataatccaacagaaaacttaaaaagcGATGTTAATTACGTCAAAGAGGAGGGGGATGATTTTATAAATGATGATATAAGTGATTATCCGGAAATCATGGTCGAAGAAAACAGTCTCACAGttgaaaaaacattaaaaacagaCTTGGGTATTAGCGatacaaatttaaaaattaacatgAACAAAGTTGTCGAGAAAACTGAATTTAATATGAGTAATAATGAAATTGGACTAGTGTGTACTGTATGTCAAAAAGAATTTCCAAATTATGAGCATTTACAATTACATATGTTAACACATAACAACGGAAATGCCGAAAACTATCAGTGCACAAAATGCAACTGTAATTTTAAATGCAAATTAGCTTTGAAAAGTCAcacaaaaaatcataaaataaaaacaaaagttaaacagaagaaaacaaaaattaataaagattaTAAAAATGGTTTAGCTCTCGCACTAACATGTTCAAAATGTGAAGAAACATTCACCTCTATGGAATTCTTTCAAGCACATTCAAAGATGCATAAAGAAGACAGCACACTTAATTTAAATAGTCGTGGTATTAAGGAGATAAATAACGACATACAGAGCTACCAATGTTCGTTATGCATGCGTAAGTTTGTACACAGAGCATCGTTAGTGACTCACATAAAACGTCACGAGGATAGAGCACAGATAAAGTATACATGTAAAACTTGCAAAAGAGAATTTCAGCACAAGgcACATCTAGAAAACCATGTAGTCCTGGTACATTCGAAGGACAAAGGATTCACATGTGACGTTTGTAACAAAAGTTTTTCTACTCAAGAGACTCTAGACAGCCACAAGGAGAGACACAAAGTTGACAGAAAACACGAGTGCAAGGTGTGCAACAAGTGGTTCGCGATGCTGTCGACGCTGACGGAGCACCTCAAGACGCACACGGGCGAGAAGCCGCACCTGTGCTCGGTGTGCGGGCGCGGGTTCAGCCAGAAGAACAACCTGACCCAGCACATGCGCCGCCACCAGGGCCTCAAGCCCTTCAAGTGCGACACCTGCGACAGGGGGTTTGTATCGAAGGGCGAGCTGGACGCGCACGCGCGCAAGCACAGCGGCGCACACCCGTTCGTGTGCGACGACTGCGGCGGCCGGTTCACCACCTCCAGCTCGCTCACCAAGCACAGGCGAATTCACACAGGCGAGCGACCGTACGCCTGCGACTTATGCCCCATGAGATTCACAGTCCTCAACACCCTCAAGAACCACAGACGAACCCATACAGGGGAAAAACCGTACCAGTGCTCGCATTGTGAAAAGGCCTTTACCCAGAGAAACGATCTCGTCTCTCACATAAGATGCCACACCGGGGAACGGCCTTATATCTGCACATGTTGTGGACAGGCCTTTAGAAAGGCCTCCGCTCTCAAAGTGCATATTAAAGTGCACGGCAAGGAGAGTTTGATTATGTAG
Protein Sequence: MDNVLRRIICRTCLTEAHGYKSLLSKMDGDDRTIREVLSNFINVDISLNDKYPKQVCDECYTMIFKADQFKKRCLQSETILKNGFLSHTFEELIKREIDSSEHLNVVNPHTSTQITNKSYFENCLKKNRSVSTAIEMAFVDNYYNPTENLKSDVNYVKEEGDDFINDDISDYPEIMVEENSLTVEKTLKTDLGISDTNLKINMNKVVEKTEFNMSNNEIGLVCTVCQKEFPNYEHLQLHMLTHNNGNAENYQCTKCNCNFKCKLALKSHTKNHKIKTKVKQKKTKINKDYKNGLALALTCSKCEETFTSMEFFQAHSKMHKEDSTLNLNSRGIKEINNDIQSYQCSLCMRKFVHRASLVTHIKRHEDRAQIKYTCKTCKREFQHKAHLENHVVLVHSKDKGFTCDVCNKSFSTQETLDSHKERHKVDRKHECKVCNKWFAMLSTLTEHLKTHTGEKPHLCSVCGRGFSQKNNLTQHMRRHQGLKPFKCDTCDRGFVSKGELDAHARKHSGAHPFVCDDCGGRFTTSSSLTKHRRIHTGERPYACDLCPMRFTVLNTLKNHRRTHTGEKPYQCSHCEKAFTQRNDLVSHIRCHTGERPYICTCCGQAFRKASALKVHIKVHGKESLIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -