Hsem000251.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000001.1:5584991-5591606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.2 1.2e+02 3.8 0.8 2 21 255 274 254 275 0.89 2 12 0.0004 0.021 15.6 0.9 1 23 284 306 284 306 0.96 3 12 1.3e-05 0.00067 20.3 1.7 2 23 313 334 312 334 0.97 4 12 3.5e-06 0.00018 22.1 2.0 2 23 342 363 341 363 0.97 5 12 0.00033 0.018 15.8 0.3 1 23 372 394 372 394 0.93 6 12 2.5e-06 0.00013 22.5 1.5 2 23 401 422 400 422 0.96 7 12 0.00064 0.034 14.9 5.5 1 23 428 450 428 450 0.99 8 12 1.4e-08 7.5e-07 29.6 0.4 1 23 456 478 456 478 0.99 9 12 2.2e-05 0.0011 19.6 0.1 1 23 484 506 484 506 0.98 10 12 0.0059 0.31 11.9 0.2 1 12 512 523 512 533 0.86 11 12 0.01 0.55 11.1 0.0 1 23 539 561 539 561 0.92 12 12 0.00036 0.019 15.7 0.8 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGGCAAGTACACCAAGCGAGTACAATATCACTGATAATGTGGCTGTAGTAAATAAAATACCAGATACAGCTTTAATAGATGAACCAAGTCAAATAAAACGTACTAGAAAGCGTGTTAAAAATAAACGAACAATTACTAGAACTCCTAAGTCACAGAACAGTTCTAAAAAGAAACTTCGAACCTGTGATTTCAAGGATGTATGTAGAATTTGCTTAGTTGCCAAAGATGCCATGGTGTCTATGATGTCCAAGTATGGCAGTGACTGTGTGGTGGACATGTTTCAGTCTATTACCTCTGTTGAGGTGGATCAAGAAGACAATCTCCCTATGTCAATTTGTGGTTTATGCAGCAGTAAGCTAGCTGATTGTTATGCATTTAAGATTCAGTGTTTGGAATCTAACAATATTTTACAGTctaaaattagtaaaaataaaaattacaaaagtaaAAAAGACTCAAGTATTACAAGCAAAAAAGATAAAGAAACACAAACATGTGTTGATGATTATGATGTTGTGGAAAAGAAAAGAGATGAGAATTATTTAGATATCAGATTTGATAGTGATTTCCAAACAGAAGCAGATAACGATGGTGATGAAGATGACGATAACGAAGATGAAGATGAAGAAATTGAATTTTTAGAGGAAGATTCATATCTAGAAGATTCAATTAAAACTGATATCGAAAAAAAGATTCAGCAAATAACATACAAATTCTTAACAGAGAGAAAGAATCAGAGTTGTGTCAAGAAAAAGCAGCTCTCTTGTTCCAAATGTTTGAAGAAATTTCTTAAATTGAAGACATTAAGAGCTCACAGCAAGGTGTGCAACGAAAGTATAAGAAGTGAATTCAGATGTAGTCAATGCCCACAATGTTTTGATTCCGCAAATGATCTGAAAATACATTCAGCAGTACACATCAAGGGAAGGGAATGGAAGTGTGTTGAATGCGAAAAGGagtttacagACCGCAGCAGGTTTCGGCGCCACATCCGCCGCCACATGGACACCATGAAGCGCTGGTCGTGCTCCGAGTGCGGCAAAACCTTCACGGAGCAGTGCGCGTTGCGGCGCCACACGCGCGTGCACACCGGCGAGACCAAGGAGAAGAGGTTCCCGTGCGTGCTGTGCGACAAGAAATTCGCTGATAAGAATCAACTGAACGAGCACAGCGCCAACCACACCGGCGAGCGTCCGTGCACGTGCGACGACTGCGGCAAGACGTTCGCGTCGTCGCGCCTGCTGGCGTCGCACCGCCGCGTGCACAGCGACTACTTGCCCTACGAGTGCGCCTACTGCGACAGACGATTCCGTATGAAGTCAACGCGCACTACACACCACCGCACGCACACGGGCGAGCGGCCGTACGTGTGCACGGTGTGCGGGAAGAGGTTCATCCAGGCCTCCAACCTCAGCCTGCACATGCGCACTCATACAGGTGAAAAGCCTTACTCGTGCGAGGTGTGCGGACGCAAGTTCGCGTCCGGCTCCACGCTCGCCGTGCACGTGCGGATACACACCGGCGAGAAACCCTACAGCTGCCCCATCTGCGGGAAACGGTTCGCGCGCACTGACATCAAGCCGCACCTGCGGCTGCACACGGGCGAGCGGCCCTACGCCTGCGCCGCCTGCCCCAAGCGCTTCGTGAGCTCCGCCGCGCTGCGCGAGCACAGCGTCGTGCACACCGGTGAAAGACGGTTCCAATGCACCTTGTGTCCAGAGAAATACAAAAAGAAGATTTACTTGATTAGTCACATGGACAAAGTCCACGGCAAGGGCGATAAAGCAGAGCAAGGAAATATAAAAATCCGACCTTATCTTATAGATGTAACTTATGAATCTAATGAAGGTGAAggtgaaaataaaaatgaaactttGAATACGGACGAAATTGCATTAGATAGCGCGGGAGAATTAATATTGCCGGAAGATGACGAGTTTAAAATCACAGATGAAGAACGAAATATAAACTCCCAAAACAACAGTGACGAAAGCTTAAATGAAGTTGTTTTAAGTGATGAATTAAACATTAGTGAAGAAGTTGAAATGAACGAAGCAGAGTCTTTTGAAGGAACAAGAGTGAATGTGtaa
- Protein Sequence
- MASTPSEYNITDNVAVVNKIPDTALIDEPSQIKRTRKRVKNKRTITRTPKSQNSSKKKLRTCDFKDVCRICLVAKDAMVSMMSKYGSDCVVDMFQSITSVEVDQEDNLPMSICGLCSSKLADCYAFKIQCLESNNILQSKISKNKNYKSKKDSSITSKKDKETQTCVDDYDVVEKKRDENYLDIRFDSDFQTEADNDGDEDDDNEDEDEEIEFLEEDSYLEDSIKTDIEKKIQQITYKFLTERKNQSCVKKKQLSCSKCLKKFLKLKTLRAHSKVCNESIRSEFRCSQCPQCFDSANDLKIHSAVHIKGREWKCVECEKEFTDRSRFRRHIRRHMDTMKRWSCSECGKTFTEQCALRRHTRVHTGETKEKRFPCVLCDKKFADKNQLNEHSANHTGERPCTCDDCGKTFASSRLLASHRRVHSDYLPYECAYCDRRFRMKSTRTTHHRTHTGERPYVCTVCGKRFIQASNLSLHMRTHTGEKPYSCEVCGRKFASGSTLAVHVRIHTGEKPYSCPICGKRFARTDIKPHLRLHTGERPYACAACPKRFVSSAALREHSVVHTGERRFQCTLCPEKYKKKIYLISHMDKVHGKGDKAEQGNIKIRPYLIDVTYESNEGEGENKNETLNTDEIALDSAGELILPEDDEFKITDEERNINSQNNSDESLNEVVLSDELNISEEVEMNEAESFEGTRVNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -