Hsem001158.2
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000005.1:6437357-6446090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.024 1.3 10.0 0.6 3 23 677 698 676 698 0.90 2 23 0.08 4.2 8.3 0.3 1 21 1076 1096 1076 1097 0.96 3 23 8.9 4.7e+02 1.9 0.3 1 22 1141 1162 1141 1164 0.82 4 23 4.5 2.4e+02 2.8 0.5 3 14 1175 1186 1174 1194 0.78 5 23 1.3 68 4.6 0.1 3 20 1203 1220 1201 1224 0.89 6 23 0.0034 0.18 12.7 0.1 3 23 1244 1265 1242 1265 0.96 7 23 0.048 2.6 9.0 3.0 1 23 1271 1294 1271 1294 0.95 8 23 0.17 8.8 7.3 0.0 1 23 1320 1343 1320 1343 0.90 9 23 0.025 1.3 9.9 3.4 1 23 1348 1370 1348 1370 0.97 10 23 0.022 1.1 10.1 0.2 1 23 1376 1399 1376 1399 0.95 11 23 0.0047 0.25 12.2 1.5 1 23 1411 1433 1411 1433 0.98 12 23 0.0019 0.1 13.4 4.0 1 23 1476 1499 1476 1499 0.96 13 23 0.14 7.6 7.5 0.6 1 23 1559 1582 1559 1582 0.96 14 23 0.0015 0.077 13.8 2.1 2 23 1606 1628 1605 1628 0.95 15 23 0.018 0.93 10.4 0.2 2 23 1634 1656 1633 1656 0.96 16 23 0.013 0.69 10.8 0.2 1 21 1700 1720 1700 1721 0.95 17 23 0.0016 0.086 13.7 0.6 1 23 1731 1753 1731 1753 0.93 18 23 0.00012 0.0062 17.3 0.3 2 23 1843 1865 1843 1865 0.93 19 23 2.4e-07 1.2e-05 25.7 1.1 3 23 1872 1892 1871 1892 0.98 20 23 0.27 14 6.7 0.2 1 23 1910 1932 1910 1933 0.91 21 23 0.16 8.7 7.4 0.0 1 23 1955 1977 1955 1977 0.97 22 23 0.036 1.9 9.4 0.6 1 23 1983 2006 1983 2006 0.95 23 23 0.0004 0.021 15.6 0.6 1 23 2014 2037 2014 2037 0.96
Sequence Information
- Coding Sequence
- aTGAGTGTAAATTTTGACCGTGTTTGTAGACTGTGCTTGTCATCTCGATGTGAATTACTACCGATATTtcctaccaccagttcggatgACTCGGATCCTCCTGTCCTCGCTTCGAAAATAAAAGATTGCGTGTCAGTGCAGATAAGGGAAAATGATGACTTGCCAACCAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCACATATTTAAAGCTGTGTGTGACAGGAGCCAAAACAAATTACAGTCTCTTACAAACAAGGAGAGCAACCTACTAGAAGAGttgAACATAAAAAGTGAGCCTCTGTCTGATGGAGCTTATGATGATGGAGTGGTCATTGATGGATCATACCCTGACAGTGAGAATGCTGGCCCATCAAGTAAACTGCAGCCAGAAGGACCTCCTATTTTGGCTTCACTGGGACTTACGCCAAGAAGTGATAAGAAATATATAGATCCAAGAATGGACTGGCAACGAGTACATGCTATATTGGACATGGTCCAAGAAGACGAAGTTATTGACTCCCTACAATCAATGGAAGAATGTGATGTCATACACCAATCCGACCACGATTCTGAGACTGAGATAGAGCTCTCACATGAAAGAGTGGGTGATGACTATGTGGATTATAAGAAGGGGTATGTGTGTAAGAACAGAAAAGTTATATTGAAAAAACCTAAATTAACACCTGAGGATACCATTGCAAGAATCAAAGAGGCCTCGATTTTGAGGAAGAGAAGTTTTGTATCCAACAAGCACTGTGCTCAACCGAGGAGCGCCTGGCAGATGCTTTTTACTGATGACTTGCTGGAGCTGATAGTCACCTCCACAAATGAAAGGATTGTCGCAATTGGTAAAAAACATAAACCCACAAATATTTCTGAGATACGAACACTCATTGGGATTTTGTATTATCATGGCATTATGCGCCCGACACATCAAAAGATCATTGACCTCTGGCATGAGGAGTTCGGTGCTATTTGTGTAAGGAATGCCATGGCGTACGAGAGATTCAAATTAATTCTCGAAAACATGAGCTTTGACACTGAGGATGACAGCATCATTCAGTTTGATGTTATGAAACGTTTGCggaaagtttttgaaatattCGCCTTGAACTGTAGAACGTCGAAGGAAGTCAGTAACATTGTTGTTATCGATGAAACATTGTTACCTATCCACGGCCCTTGTCCATTCCGATATAACATCAGGAAGAAGAGCTTAAAGACTGGAATTAAATTGATGCTATTAATTGATCCGGTAGATTTTTATGTCACCAATCTGGATGTAATAACGGATCCATATTTCGGCTGCGATGAAATAGCTGCAAAGTTGGTGCAACATTTAGCAGGAACTGGAAGGACAATTATCATGGACAGCTGGTTTACGTCAGATTCGTTGATTAACAGATTGAAAACTGAATACGACCTGTTTACCATAGGAGCTCTACATCCAAATGATGAAAATATACCTCCCTTATTCTTATCACACTATAGGAAGAAAAAGACTTTTATAAGTGGATTTATGGACAAAGATAAGACCTTGAGCTCCTATGTGAATCCGAGTTTGAAAGTAGTTAACGTTTTAACTAATGATCCAAAGTTTTATAAGAAAGGGAACAGCAGCCATACATCAGTGGTttctttttataataagtaccaTTCTGCTGTAGAAGTGCTGGATGTTTTGATGCATTATTATACTACAATGCAGCATACAAATGACTGGACCCTTTCGCTGTTCTTCATGCTATTGAACATTGGATCTGTTAATGCTCAAGTCATATGGAGTTCGCAGGATCAAACACACATAATGCAACGCCGTTTATTTATTAGAGAGTTGGCGGGCATGGATAGTGAAAAGGACGAGGAATATGAAGAGGAAGAAGATCGAGAAGAAATACCAGAACAGCAGTCTTATAGAGGTGCATCGCAAATGCCTGAAGTTTCCATCACCGTGATGCGCCCAACCGGAGAAACTCTTCATGCTAGGCAAGGCATTCAACAGATTGCCTCTAAGGATTGTCTTGTTTGCGGTCGCTCTTACAGATACTCTCACAATGCACGCAGACACGAACTGGGTGCTCACGGTTTCGACAGATACACAAACAAAACTACAGCCAAGAAATCTCACAGTCATATGATACCTAAATTCAGGCCAAATCCATTCAACCCTAAAGCACGTTTAATGCCAAATCCAATCAGCCACAAAATGCAATACATACCAAAACCAGTCCCAACTAAAATGATGCCCCAAAAAGTTATTGCACCACCGAAACCAATTCCGATTAGAACTCTTAAACCAACCCAGAACAATTTACCATACCCCCTTCGTATTAAAGCTTTAAAGGACCTACAGATTAAGAAAAAGGAACCACAAATATTGAAAACGTTGCTCACATCAAAGCCAGAAGTTTTAGTGTCTGAGCCTGAAATAATTAACTCAGGCCCAGAAAGTCCAGAGACTTTGATCTCTGAACCAGAAATAGCATCTTTTCAAGTTGAGACAATCCTATCAGAGCCAGGTGGCTTTATTAATCAACCTCACGAGGAAGATGAGATGGAAGATGACAATAACCAAGAACAGCATTATGACACTGTTGACATGGAATCAGATAATGAGATCGAAATAGCTCGACAGCAAGAAAACAATATTGATATTGAAGAGAATCACATTGGAAATGATGCTGAAGAAAATGCACAAGACGAAGAAGAAATGAATAATGAAGAAATTGATGAAAAAGAACATATGGAAGATAATGTAGACAGTCAAGACATGAGTGTTGAAAATAATGTTAATGCAGAGCTTGATGAAACCGCTAAAGAACACGATGAAGAGAatgatgaaaaagaaaatcacGACCAAGACACAATCCAAGAAGACAACGAAGATGATGAAGATTTGCCTCCAATGAGTATTGCTCCTGTGGTCGAGATTAATGAAGATTTACAAACTAATTCATATCACAGTGAAGGAAATGAGGATGAAGACCTCGACGAGACTGTCGATCCCAATGAACCTGTTGATGGTGATGAAACAGAAAAACAGCTAGATCCGAATAAAGTGTATGTTACTAAAACACAAAGAGATTTCATTCTACAATACCGTGATATTATTGAACAAATCAACACCAAGCTTTGTCTCTGCTGTAACAAAGAACATCCACGTAGAAAAGCAGTAATACAACATTTACAGAAAAATGGGCACAAAGTTCCAAAGCACACATGCTACAATTGTGTGGTTACGTTCACTCATATTGGAGCTTTACTGAGCCACATGAGAGCTAATACTTGTACTAACCTGTGGAAAATAATTTATGATGAAAAAGGCATCCCTGATGATATAGTGGTGGAAGATGAAGAGGAACCCAAAGACACAAAAATTCAATATAAAGATATACTCAATGCAAGGTCTTATGCATGCAAATTGTGTCCAGCCAAATTCCAACTGAAGCAGTTTATAATGAAGCATGTTCTAGATGTTCATGAAGACGGCCAATCGCGAGTCCCTAATTCCTGTGTACATTGCGGTTTAAGATTCAAAGAAAAAAGTATCGGCAAGAGGCACATACGCAATGGAGATTGTACTGTATACATTGCTTGTGAGTTATGTTCTGAAAAATTCGTGAATATTCATGAATTTAACGAGCACGCCGTAGCTGTCCATGCCGGCAATTTCGACCCCGATAGTCAGAACAAGTGCGTCGACGGCAGACCGACAGATTGCCCGATATGCGGGAAGAAGAATAGTAGCTACCCGAATTTGGTCAAGCATTTGAGAGTGATACACAACGACGATAAACCGCATCACTGTCAGCACTGCGACGCCAAATTTGAACAAGCGGCCGAAATTAACAAACATATTTACATGGAGCACTCCAACCGAATGCTGGGAATGGCGTCCACCGAGCCCGACATGTCGCTCGTCAAGGAGGAAGCCGAGGAGTACCACTACTCTTGCACGGAGTGCAACGCCATCTTCGAGACCGTCGACGCCTGGACTGACCACCAGGTCGCGGAACACAACCAGGTCGCTCACCACTGTGACCAGTGCGAAAAGAAGTTCTTGCGTCCGTCAGAACTCGCCGAACACAAAAATACACATCTCCGAGTTAAATTCTATCCGTGCAACGTTTGTTCCAACTCGTATAGCTCACCGCAAAAACTGTCCGAGCACGTGCAACAGGCGCACCCCAATACTCCTGTGCGCAATGCAGATAACGAATTTTACTGCGATTTATGCATACGATCGTTTAAGAGTCGTCAGGCGTATTCCAATCATATGCGTATTCATGCCAAAGTGCCCACGACTAATAGGAAACCTGGCGTAGGAAAGGGCTTCCCACCTCAGATTATTGGAAAACCCATTCGTCAATTTTCTATGCAACCAGGATTCAGTCCTTTTGTTCCGAACGCCCCATACTGCTGTGACATTTGCGGAAAAGGATTCATGCATAAGAAAAACATATGGAAACATAAAAAGGTGCTGCACGCAGATATTCTCAATGACAGGCATGATAGCGAAGAAAATACTATGCATGCATCTACAGAGGAAGATGATTACAATGTGGATGAAAATGGCGCAATTCTATCTACTCCTCAATTCAATAGTTTCAACTTTACAAATCTTCCGAATAATTCGCAACAGTCGTCACAAGACATCCTTCCATACTCCTGTGATATATGTTACAAGCGTTTCCCAATTATAGCGAGTGTATATAAGCACAAGAGAGTTAAGCACGATATTCCTTACGGAAGCGTCAGTGGCTCTGAGGGGCAATCTGCGCCGACATCGTCCGAAGGCAGGTCGAGTTGCACTATATGCAAAATAACATTTTCAGATAAGAAATCTTATTATCGTCACAGGAAAAACGTTCATAAATCCTCCGTGCAGATGTGCAAAATTTGTGGGAAACCGCTCAGCTCAACCTTAGAACTTTACGAGCATTTAAAAAAGGCGCACGCACGCGAGTTGTTGGGTTACGATGCCAATCAAGGGACAAGTAAGTCTCAAGAAATAGCACAAGAGGCGGAGGCAGACTACGAGGCAGATCAAGATCTGGTCGACCCTGGCGCCGAGTTTCAAGCACGGTACCCGTGTGATACTTGTGGCAAACAGTTCGTCGGATTATTGGCTTTGCAAAATCACCAGTGTATAAACCAGATACAATCGCAGCCGCAAACTTTCGACTGCGAAATATGTCACAAGAGTTACACTTCGATCGCCGCTTTGAAGAGCCACCGCGGCTGGCATCTGAGGTCACCCGACGGCAAGGCCGCCGCCAATAACACCGGACTTTGGATGCCTCAGAATAAAGTTACGACTAAAATTAGTAAACACGAGGTCATCGAACCTGTACCGACTCGTTCTTCTCAACCTACGCCGACTACCAGTGTGCCAAAAAGAAGGTTACCGCCGGAAGTGGAGGTGACCGTGGTGAACCCTAACAAGAAGTTGCGATCCGACGATTCTCTCGAAATGGAACACCAGAACAACTCGTCCGGTGGGGTCGAGGACAGGTACTGTAACATTTGCGACAAAGAGTTCACGAAGCGAGCCGCGTACCAGCGTCACATGGATGAGGTGCATCAGCCGAATTCCGTGTTCTGTCCGGTTTGCGACAAGAGTTTCACGCGCAAATCGACTCTTATCGTGCATATGAAGAAGCATTACGAAGGCGGGGAAGGGTCGTCTAGTTTGGGGCAAATGGACGACGAGGGGCACGCGTGCGACGTGTGCGGCGCTCAGTTCGAGAGCGCCAAGGCCGTGAACGTGCACAAGGCCGCGCACCACGCCGAGGACTCCGCCGGGGAGTCCGACGACGACGGCAGCACGACGGTGCAGCAGCCCGGTGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCCACTCCGCGCGACCTGATCGCCCACCGCGCGATGCACGCCACGCCCACCAAGTTCTTCTGCAACATTTGCAAGGTCTACTTCGCGCGCGCCCTCGACCTGTCCTCGCACACGCGCGCCAGGCACGCGGACAACGAGAAAGTTTTCTTCCCTTGCGCCATGTGCGACCGATTTTACATGAACAAAAAGAGTTTGCAACGGCACATTGAGATGATGCACTGA
- Protein Sequence
- MSVNFDRVCRLCLSSRCELLPIFPTTSSDDSDPPVLASKIKDCVSVQIRENDDLPTNVCRKCMDNVNNWHIFKAVCDRSQNKLQSLTNKESNLLEELNIKSEPLSDGAYDDGVVIDGSYPDSENAGPSSKLQPEGPPILASLGLTPRSDKKYIDPRMDWQRVHAILDMVQEDEVIDSLQSMEECDVIHQSDHDSETEIELSHERVGDDYVDYKKGYVCKNRKVILKKPKLTPEDTIARIKEASILRKRSFVSNKHCAQPRSAWQMLFTDDLLELIVTSTNERIVAIGKKHKPTNISEIRTLIGILYYHGIMRPTHQKIIDLWHEEFGAICVRNAMAYERFKLILENMSFDTEDDSIIQFDVMKRLRKVFEIFALNCRTSKEVSNIVVIDETLLPIHGPCPFRYNIRKKSLKTGIKLMLLIDPVDFYVTNLDVITDPYFGCDEIAAKLVQHLAGTGRTIIMDSWFTSDSLINRLKTEYDLFTIGALHPNDENIPPLFLSHYRKKKTFISGFMDKDKTLSSYVNPSLKVVNVLTNDPKFYKKGNSSHTSVVSFYNKYHSAVEVLDVLMHYYTTMQHTNDWTLSLFFMLLNIGSVNAQVIWSSQDQTHIMQRRLFIRELAGMDSEKDEEYEEEEDREEIPEQQSYRGASQMPEVSITVMRPTGETLHARQGIQQIASKDCLVCGRSYRYSHNARRHELGAHGFDRYTNKTTAKKSHSHMIPKFRPNPFNPKARLMPNPISHKMQYIPKPVPTKMMPQKVIAPPKPIPIRTLKPTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPGGFINQPHEEDEMEDDNNQEQHYDTVDMESDNEIEIARQQENNIDIEENHIGNDAEENAQDEEEMNNEEIDEKEHMEDNVDSQDMSVENNVNAELDETAKEHDEENDEKENHDQDTIQEDNEDDEDLPPMSIAPVVEINEDLQTNSYHSEGNEDEDLDETVDPNEPVDGDETEKQLDPNKVYVTKTQRDFILQYRDIIEQINTKLCLCCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRANTCTNLWKIIYDEKGIPDDIVVEDEEEPKDTKIQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPNSCVHCGLRFKEKSIGKRHIRNGDCTVYIACELCSEKFVNIHEFNEHAVAVHAGNFDPDSQNKCVDGRPTDCPICGKKNSSYPNLVKHLRVIHNDDKPHHCQHCDAKFEQAAEINKHIYMEHSNRMLGMASTEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCNVCSNSYSSPQKLSEHVQQAHPNTPVRNADNEFYCDLCIRSFKSRQAYSNHMRIHAKVPTTNRKPGVGKGFPPQIIGKPIRQFSMQPGFSPFVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNDRHDSEENTMHASTEEDDYNVDENGAILSTPQFNSFNFTNLPNNSQQSSQDILPYSCDICYKRFPIIASVYKHKRVKHDIPYGSVSGSEGQSAPTSSEGRSSCTICKITFSDKKSYYRHRKNVHKSSVQMCKICGKPLSSTLELYEHLKKAHARELLGYDANQGTSKSQEIAQEAEADYEADQDLVDPGAEFQARYPCDTCGKQFVGLLALQNHQCINQIQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTTKISKHEVIEPVPTRSSQPTPTTSVPKRRLPPEVEVTVVNPNKKLRSDDSLEMEHQNNSSGGVEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSSLGQMDDEGHACDVCGAQFESAKAVNVHKAAHHAEDSAGESDDDGSTTVQQPGEFTCGQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -