Hsem016499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hipparchia semele
Gene Symbol
-
Assembly
GCA_933228835.1
Location
CAKOGE010000182.1:985392-989846[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2 1.1e+02 3.9 1.3 1 23 60 83 60 83 0.92
2 25 0.028 1.5 9.8 0.0 2 23 110 131 109 131 0.96
3 25 0.44 23 6.0 0.8 1 23 153 175 153 175 0.96
4 25 0.021 1.1 10.2 0.1 1 23 179 201 179 201 0.96
5 25 0.0044 0.24 12.3 1.2 1 23 206 229 206 229 0.92
6 25 0.75 40 5.3 1.1 3 23 316 337 314 337 0.95
7 25 0.32 17 6.4 0.0 2 23 362 383 361 383 0.95
8 25 0.00059 0.031 15.1 0.3 3 23 407 427 405 427 0.96
9 25 0.047 2.5 9.1 0.1 1 23 431 453 431 453 0.97
10 25 0.004 0.21 12.4 4.3 1 23 458 481 458 481 0.97
11 25 0.12 6.1 7.8 2.4 2 23 489 511 488 511 0.92
12 25 0.0012 0.063 14.1 0.9 2 23 519 541 518 541 0.95
13 25 6.5e-05 0.0034 18.1 0.3 1 23 547 569 547 569 0.98
14 25 0.00025 0.013 16.2 1.4 1 23 575 597 575 597 0.98
15 25 9.1e-05 0.0048 17.6 0.4 1 23 603 626 603 626 0.98
16 25 0.069 3.7 8.5 2.0 1 23 695 718 695 718 0.97
17 25 0.094 5 8.1 0.7 2 23 744 765 743 765 0.96
18 25 0.009 0.48 11.3 1.4 2 23 788 809 787 809 0.97
19 25 0.0081 0.43 11.5 0.0 2 23 814 835 814 835 0.96
20 25 0.045 2.4 9.1 1.0 1 23 840 863 840 863 0.87
21 25 0.007 0.37 11.7 4.3 2 23 871 893 870 893 0.96
22 25 0.0051 0.27 12.1 1.0 1 23 900 923 900 923 0.98
23 25 0.035 1.9 9.5 3.3 1 23 929 951 929 951 0.98
24 25 6.1e-05 0.0032 18.1 1.3 1 23 957 979 957 979 0.99
25 25 3.9e-05 0.0021 18.8 3.6 1 23 985 1008 985 1008 0.98

Sequence Information

Coding Sequence
ATGGTTCGTATATATAatgAAGAAAACAGCCCGGGCCCAAGCAAAGCCATCGAAAAACTTAATCCTAAACAAAGTAAAACAAATGATCAGTCTGAAATGGACCAACACAGAAACAATATCATAGTCGTATTGCAAAACACGAATGCAACCCCATTTGAAAGACAAGGCGAAATCGCTTACACTTGTTATTTTTGCAAAAGCGAATACTTAAATCCGCGTGACTTGAAGAGACACACGATCGAAACCCATAATAACGATGATTATAACGAAATTTGTAAAGGAAAACCGTTGCGCTACTACCTTATTAAATTAGACATAACTGATTTAATCTGTAGCATTTGCAATGAAGTGATAATTTCGCCAGAAGAACTGTTTGACCATCTCGAAAGTCATGGCAAAACAATATTCAGGGATGTAAATAATAGAATAATACCTTTCAGATTCGACAGCGATAGTCATATATGTACAATTTGCGCGGTTGAGTATAATAAATTCAAACCTTTACGTGATCACCTCAACACCCACTTTAGGAATTATGTGTGTAAATTCTGCGACAATGGTTTTATTACACTGGGTATGCTATCCTCGCATGAGGCGAGCCATAAGACTGGCGTGTACGCATGCCGTTATTGtgacaaaaaattcaattcggaaaaaaataaaaaggttcACGAGACTGTAATACACGCAGATTTCGCTAAGAATGCAAAGCGAAAGGCAAtacaacaagaaaaaaataatgtcaCAAATGATCCCAAAGGAAGAAGGAAGCAAGAATCAAAAGACGACATATCTGACGAATCTAATGATGAAATTACAGATACAACTATATCTGCAGGATCGAGTCAAAAGAGAGCTAGAGATAAGCATCGAGATAATATATTTGTTGTTCTAGAAAACACAAACGCAACGCCTATCGGTAAATGCAATGACACTGGATACGGCTGCCAGTATTGCACGACAAAATATCTAAATCCTAGAGATCTAAAGGATCATACATCAAAAACTCATGCCAGCGCCGATTCCTTAAACATTTGTAAACGTGTAGACTCCTATATTGTTAAACTAGACATAACAGATTTAATTTGCAAGGTCTGCAACAGCGGCGTTGAACCTTGGGATCAATTATTCAACCACTTAGAAAGCCACGGCAAAGTGATTCACAGAGATATAAAAAACCACATTATACCGTTCAAATTTGACGGAGATAAACTTGCGTGCGCGATTTGCCCCAGGGGTTTCAACAAATTCAAACTTCTCCGTCAACACATGAACAGCCACTTCAGTAACTACGCCTGTAACGTTTGCCTTTCGGGTTTCATCACCGAGAGAATGCTTTCCGCTCACATGCAAGGCCATAAAACCGGTGTTTTCAAATGCAGTTTTTGCGAGAAAAGCTTCAACACACACAGAAATAAGAAAGCTCACGAGAACATGGTTCACGTTCACTTGAACTATGCCAGCAAATGCGGGTTCTGTAAGAAGAAATTCAAGAGTTACAAGCAAAAGAACGACCATCTATCCGCCGTTCATGGCATCACCCGGAAGCAAGTCAGCTGTTCAGCTTGCAACCGGTCATTTGAAAGTCAGACTAAGTTGACGAACCATGTCAAAAGAGACCACCTTCTGGAACGTCTTTACAAATGCAATGAATGCGATAGAGCGTTTTTCGGTAAAGTGGATTTAGCACGACATCTGGTGAAGCACAGTGGCTTAAAGAAGTTTGAATGCAACGTGTGCATGAAGGCGTTCTTCTATAGAAAATCTTTAAGGGAACACATGCGTATCCATTTGAACGATAAGCGATTCAAATGTGATCGGTGTGGGATGGCGTTCATCCAGAAATGGAATTGGCTGGGCCACATGCGCAGGAAGCATAGCTTGGAAATTGCGGATCTCGTAACGAAAGAGGGACAAGTGCAAGTGCAAGTTTCAAAAAATCCCGGGAAGGCCATACCGAAACAGAAGAAGAATGGAACAAACAGCGCCAAAAAAGGTGAAAGAAGCAAGCACATAGATAACATAACCACCCTCTTCAAACACACCAACGCCACACCCTTACGCTGTCAGAACGACATAGGATACGCATGTAGTTTCTGCACACAATATTGTGAAAAACCTGCCGATCTGAAAGAGCATACAAGATCAACCCATCAATCCGATATACAGAATATCATGAGAAGGAAATCACTCAACAACTATTACGTCAAACTTGATATAACTGACTTACAATGCAACGAATGCAATACCAGAATAGACAATTTAGAGGACATGATGCATCACCTTCAGGAACACAACAAAGACATACATCTGGACATAAATAATCACATAGTGCCTTTTAGTTTCGACGACGATGAACTGCGCTGCGTCATTTGCAAAGCAGAGTTCAACAAATTCAAGAAACTAACTGAACACATGAACAAACATTACAGAAACCGCGTTTGCGATGTTTGCGGCGCGGGTTTTATCAACGAAAAATCGTTTCAAATACATGCACAATCTCACAAAATAGGCGTTTTCACTTGCGAATTCTGTCAGAAAGTCTTCGACACCTCTATGAAGAAGAGGTCCCACGAATTGGCTGTACACATACATTCACAGATGGTAAGCAAATGCGGGTATTGCAACAAAAAGTTTAAGTCTCACAGGAGTAAAGAGAAGCACATTTCGAGCGTGCACGGCGTACGTTTTAAGGAATACAAATGCAAGTTGTGCAGCAGAGTCTACTTGAGCGCGAACTCTTTGCGAGTTCACACGAGGCGTGAGCATTTGAAGGAGCGGCATTACGAGTGTCAGCTATGCGACTTTACATCGTACGGCAAAAACTGTTTGACGAATCACATGTTGAAGCATACTGGCGTCAGGGATTTCCAGTGCGATGTTTGCTTGAAGTCGTACGGGAAGAAGAAAACTTTAAGGGAACATATGCGGATACATGCGGACGACAGACGGTTCAAGTGCGAATACTGCGGATTGAAGTTTATACAGAACTGTAGCTTAAAGGGACATATGCGGTCCAAACATAGAGATTTGCTGTCTACGTTGCAGTGA
Protein Sequence
MVRIYNEENSPGPSKAIEKLNPKQSKTNDQSEMDQHRNNIIVVLQNTNATPFERQGEIAYTCYFCKSEYLNPRDLKRHTIETHNNDDYNEICKGKPLRYYLIKLDITDLICSICNEVIISPEELFDHLESHGKTIFRDVNNRIIPFRFDSDSHICTICAVEYNKFKPLRDHLNTHFRNYVCKFCDNGFITLGMLSSHEASHKTGVYACRYCDKKFNSEKNKKVHETVIHADFAKNAKRKAIQQEKNNVTNDPKGRRKQESKDDISDESNDEITDTTISAGSSQKRARDKHRDNIFVVLENTNATPIGKCNDTGYGCQYCTTKYLNPRDLKDHTSKTHASADSLNICKRVDSYIVKLDITDLICKVCNSGVEPWDQLFNHLESHGKVIHRDIKNHIIPFKFDGDKLACAICPRGFNKFKLLRQHMNSHFSNYACNVCLSGFITERMLSAHMQGHKTGVFKCSFCEKSFNTHRNKKAHENMVHVHLNYASKCGFCKKKFKSYKQKNDHLSAVHGITRKQVSCSACNRSFESQTKLTNHVKRDHLLERLYKCNECDRAFFGKVDLARHLVKHSGLKKFECNVCMKAFFYRKSLREHMRIHLNDKRFKCDRCGMAFIQKWNWLGHMRRKHSLEIADLVTKEGQVQVQVSKNPGKAIPKQKKNGTNSAKKGERSKHIDNITTLFKHTNATPLRCQNDIGYACSFCTQYCEKPADLKEHTRSTHQSDIQNIMRRKSLNNYYVKLDITDLQCNECNTRIDNLEDMMHHLQEHNKDIHLDINNHIVPFSFDDDELRCVICKAEFNKFKKLTEHMNKHYRNRVCDVCGAGFINEKSFQIHAQSHKIGVFTCEFCQKVFDTSMKKRSHELAVHIHSQMVSKCGYCNKKFKSHRSKEKHISSVHGVRFKEYKCKLCSRVYLSANSLRVHTRREHLKERHYECQLCDFTSYGKNCLTNHMLKHTGVRDFQCDVCLKSYGKKKTLREHMRIHADDRRFKCEYCGLKFIQNCSLKGHMRSKHRDLLSTLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-