Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000178.1:4030188-4034153[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.012 0.64 10.9 1.7 1 23 404 426 404 426 0.98

2 20 0.0015 0.077 13.8 6.0 1 23 432 454 432 454 0.99

3 20 1.2e-06 6.5e-05 23.5 2.3 1 23 460 482 460 482 0.99

4 20 5.9e-06 0.00031 21.4 1.7 1 23 488 510 488 510 0.98

5 20 0.00025 0.013 16.2 0.4 1 23 516 538 516 538 0.99

6 20 0.0006 0.032 15.0 1.3 1 23 544 566 544 566 0.98

7 20 0.00015 0.0081 16.9 3.9 1 23 572 594 572 594 0.98

8 20 8.8e-06 0.00046 20.8 5.3 1 23 600 622 600 622 0.97

9 20 0.00073 0.038 14.8 0.9 1 23 628 650 628 650 0.98

10 20 2.6e-05 0.0014 19.3 1.9 1 23 656 678 656 678 0.96

11 20 0.013 0.68 10.8 0.4 1 23 684 706 684 706 0.98

12 20 0.079 4.2 8.4 0.2 1 20 712 731 712 732 0.96

13 20 0.0021 0.11 13.3 0.4 1 23 741 763 741 763 0.98

14 20 0.016 0.84 10.6 7.5 1 23 769 791 769 791 0.99

15 20 0.058 3.1 8.8 1.0 1 23 797 819 797 819 0.96

16 20 0.0022 0.11 13.3 4.8 1 23 825 847 825 847 0.97

17 20 0.00016 0.0083 16.9 2.8 1 23 854 876 854 876 0.97

18 20 0.00033 0.017 15.9 0.4 1 23 882 904 882 904 0.97

19 20 0.0098 0.52 11.2 3.2 1 23 910 932 910 932 0.99

20 20 0.063 3.3 8.7 5.6 1 23 937 960 937 960 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.012	0.64	10.9	1.7	1	23	404	426	404	426	0.98
2	20	0.0015	0.077	13.8	6.0	1	23	432	454	432	454	0.99
3	20	1.2e-06	6.5e-05	23.5	2.3	1	23	460	482	460	482	0.99
4	20	5.9e-06	0.00031	21.4	1.7	1	23	488	510	488	510	0.98
5	20	0.00025	0.013	16.2	0.4	1	23	516	538	516	538	0.99
6	20	0.0006	0.032	15.0	1.3	1	23	544	566	544	566	0.98
7	20	0.00015	0.0081	16.9	3.9	1	23	572	594	572	594	0.98
8	20	8.8e-06	0.00046	20.8	5.3	1	23	600	622	600	622	0.97
9	20	0.00073	0.038	14.8	0.9	1	23	628	650	628	650	0.98
10	20	2.6e-05	0.0014	19.3	1.9	1	23	656	678	656	678	0.96
11	20	0.013	0.68	10.8	0.4	1	23	684	706	684	706	0.98
12	20	0.079	4.2	8.4	0.2	1	20	712	731	712	732	0.96
13	20	0.0021	0.11	13.3	0.4	1	23	741	763	741	763	0.98
14	20	0.016	0.84	10.6	7.5	1	23	769	791	769	791	0.99
15	20	0.058	3.1	8.8	1.0	1	23	797	819	797	819	0.96
16	20	0.0022	0.11	13.3	4.8	1	23	825	847	825	847	0.97
17	20	0.00016	0.0083	16.9	2.8	1	23	854	876	854	876	0.97
18	20	0.00033	0.017	15.9	0.4	1	23	882	904	882	904	0.97
19	20	0.0098	0.52	11.2	3.2	1	23	910	932	910	932	0.99
20	20	0.063	3.3	8.7	5.6	1	23	937	960	937	960	0.96

Sequence Information

Coding Sequence: ATGCAGTGTTTTGTACCTGAATGTGGTAATACAGCCAGAGAGGATTCCGAATCCCTTGGAATAACTTTTCACAAGTTCCCAACTTCACCCCAAGTGTGCCATGCCTGGCTTCAAGCTCTCGGTGTACCGGGATCTCGCTTGCCACGCGGTGCTGTCGTCTGCTCGCAGCACTTCTTAGCAGAGGACTTCTGCTTTACAAGGAGTGGATCGAAGAAGATGAGAATCGGAGCCATTCCTTTTGTGATACATGACACACAAGTGCCTGCTATTAACCACAAACCGAAATcggaaacagacagacacacagaagTTCACAGTGAAACTGGCGATGAGCGTACAGAcagttttaaaattgaaatagcaAAAGTACCTGTCAAAAAACcagcaaaaataaatattgtacataGAGTAACTGACAGAGTTGAAATAAGAATAGAAAAACTGGACTTGAAAAATCTTGCAAAAGTTGGCCACAGAGTCAAAAGTTGTCTAGATAATGTTGAAATAGAAAAAGCAGAGCTACCTGATGTAGACAATGGGTCAATTCTTAAACTGGAACCTGCAGAACAGAAATGTTTGGAAATTTCTTATGATAAAGACTCAAGTCACCAATCCAAGAGCAGTTTAGAAATTAAtcattgtaataataacaaagaTACACCGTCCAAAAATATAGATTTAAATTCAAAACCAGCAATCGAATTATATTCGGAACCGACAGTTGAATTAAGTTCAGAACAGGCAGTTGAACTAATCTCAGAGTTATGTTCAGAAAAGGCGCTAGAACTAAGTTCAAGTATGGCTGTTGAATTAGGTTTAGAAAAAGCGATAGAATTAAGTTCAGAAAAGGCTGATGAATTGGGTTTAGAAAATGCAGTAGGACTAAGTTCAGACCAGGTTGTTAAAGTAAATACAGAAAATACAGATGAATTACGTTCAAAAAAGGCTGTAGGATTTAATTTAGATAAGGCTATTGAATTAGGTTTAGAAAATGCGGTAGAATTGAGTACAGAGAAGGTTGGCGAACTCTGTTCAGAAAAAGCAGACCAATCAATTCAAGTCAACAAGGTGGTTGAATTAAACAAATATGGAAAACCAAGGGCCATCAATAAACGTAAAGTTGACCGAAAAAAGAAATATGCATCCCTTACAAAGAATAAACCTGGGGTTAAGTATCAACATACCTACAATTATAGAAAAGGGAATAAATTCATTTGTGATTATTGTCAATACATAAGTAAAAGAAAGTATATATTGATCTATCACATGAGGAAGCATACAGGTGATAAACCGTACTCATGCGAGCATTGTGAATACAAATGTACGATAAAAAGCTCCTTAACATCACATATTAGAAAGCACACTAAAGAGAAACCTTACCAATGTGATATCTGTGGACTGACGTTTGCGCACACGAGCAATCTGAGCAATCACAGGCGAaaacacactggtgaaaaaccctaTGCCTGTAAGCTGTGTCCTTTAAAGTTTACAGAAAATGGCCACTTAAGACGCCACATGATGACTCACACGGGTGAGAAACGATACGTTTGCAGCGTGTGCCAGGCTAGATTCAGGACCGGAAAGACTTTGGCAAATCATGTCAGAACTCACACCGGAGAAAAACCGTACGCCTGTGACCATTGTCCGTATAAAAGTGTGAAGAAAAGTAGTTTAGTGGACCACATGACGACTCACACGGGTCAAAAGCGCTACACTTGCAAGATTTGTCAGTATAAGTTTGCAAGAAACTGCTCTTTATATTTACACATGCGAGGGCACAAGGGTGAGAAACCGCATTCATGTCAGTATTGCCATCGAAAGTTTGCGAGAAAAAGTGCGCTAAGAATACATATCCGGAGTCATACGGGTGAAAAACCTTACGCTTGTCAAATTTGCGACTACAAATGTGCGACGACGACGGGTCTAACCGCCCATACGAGGATTCACACAGGTGAAAAACCTTACTTGTGTCCGCAATGCGACTATAGATGCACTACCTCCAGCTCTCTAAGTATACATATGAAGGTTCACACCAAGGAAAAACCTTTTTCGTGCAACCTTTGTGACTTCAGAGCTGCTCGATCGAACGGTGTTAAGACCCATATGCTGACTCACTCGGGCGAAAAACCCTATCCTTGCGACAGGTGTCAGTTCAAAGGTGTGACAAAATCCGCTTTGAAAAGTCACATCAGCTGTGTGCACGAGTCGATCAAGGCCTTTCCCTGCGACCGATGCGAGTACAGAGCGAAAAataactatgctttaattgAACACAGGAGgacccacactggtgaaaaaccatATTCATGCCAGTACTGTGATTACAAATGCGCGTGCAAATCGTCTCTAAAAAAACAcgtgagaactcacactggtgaaaagccgtATCTTTgcagtgtttgtttgtcgaaATTTTCCTCGAACGGCATATTAAAGAAGCACATGACGACTCACACCGGGGAAAGACCTCATTCTTGCAACTTGTGTGAATACAAGTGCGCTACAAAATACGGTTTAAAGAGCCACATGAAAATCCACGAAAGCCGCGAGAAAAATCACAGCTGCGATGTGTGTAGCGCGAGTTTCTATAATGAGTATCAACTGAAGAGGCACACGAACacacacactggtgaaaaaccgtTCGCCTGCACGTGGTGCGATTATAAATCCGCTTCATCGAGCACTCTTAAGGCCCACGCAAGGAGACACACCGGTGAGAAACCGTACAGTTGTCAACAGTGCGCGTACAAATGTTCGACTTTGGGAGTTCTCAAATACCATATGAGGacgcacactggtgaaaagtaCACTTGCGACGTGTGCCACACTAAATACATGACTAAATGCAAGTTACTAAAGCACATCGTCAGAAATCACAAGTTTTAG
Protein Sequence: MQCFVPECGNTAREDSESLGITFHKFPTSPQVCHAWLQALGVPGSRLPRGAVVCSQHFLAEDFCFTRSGSKKMRIGAIPFVIHDTQVPAINHKPKSETDRHTEVHSETGDERTDSFKIEIAKVPVKKPAKINIVHRVTDRVEIRIEKLDLKNLAKVGHRVKSCLDNVEIEKAELPDVDNGSILKLEPAEQKCLEISYDKDSSHQSKSSLEINHCNNNKDTPSKNIDLNSKPAIELYSEPTVELSSEQAVELISELCSEKALELSSSMAVELGLEKAIELSSEKADELGLENAVGLSSDQVVKVNTENTDELRSKKAVGFNLDKAIELGLENAVELSTEKVGELCSEKADQSIQVNKVVELNKYGKPRAINKRKVDRKKKYASLTKNKPGVKYQHTYNYRKGNKFICDYCQYISKRKYILIYHMRKHTGDKPYSCEHCEYKCTIKSSLTSHIRKHTKEKPYQCDICGLTFAHTSNLSNHRRKHTGEKPYACKLCPLKFTENGHLRRHMMTHTGEKRYVCSVCQARFRTGKTLANHVRTHTGEKPYACDHCPYKSVKKSSLVDHMTTHTGQKRYTCKICQYKFARNCSLYLHMRGHKGEKPHSCQYCHRKFARKSALRIHIRSHTGEKPYACQICDYKCATTTGLTAHTRIHTGEKPYLCPQCDYRCTTSSSLSIHMKVHTKEKPFSCNLCDFRAARSNGVKTHMLTHSGEKPYPCDRCQFKGVTKSALKSHISCVHESIKAFPCDRCEYRAKNNYALIEHRRTHTGEKPYSCQYCDYKCACKSSLKKHVRTHTGEKPYLCSVCLSKFSSNGILKKHMTTHTGERPHSCNLCEYKCATKYGLKSHMKIHESREKNHSCDVCSASFYNEYQLKRHTNTHTGEKPFACTWCDYKSASSSTLKAHARRHTGEKPYSCQQCAYKCSTLGVLKYHMRTHTGEKYTCDVCHTKYMTKCKLLKHIVRNHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -