Hsem014812.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000178.1:3092443-3097011[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00019 0.01 16.6 1.5 1 23 10 33 10 33 0.96 2 25 0.003 0.16 12.8 0.6 1 21 39 59 39 60 0.95 3 25 0.0013 0.069 14.0 0.6 2 23 94 116 93 116 0.93 4 25 0.003 0.16 12.8 0.6 1 21 122 142 122 143 0.95 5 25 0.0013 0.069 14.0 0.6 2 23 177 199 176 199 0.93 6 25 0.003 0.16 12.8 0.6 1 21 205 225 205 226 0.95 7 25 0.0013 0.069 14.0 0.6 2 23 260 282 259 282 0.93 8 25 0.0052 0.27 12.1 1.7 1 22 288 309 288 312 0.91 9 25 0.003 0.16 12.8 0.6 1 21 318 338 318 339 0.95 10 25 0.0013 0.069 14.0 0.6 2 23 373 395 372 395 0.93 11 25 0.003 0.16 12.8 0.6 1 21 401 421 401 422 0.95 12 25 0.0013 0.069 14.0 0.6 2 23 456 478 455 478 0.93 13 25 0.0052 0.27 12.1 1.7 1 22 486 507 486 510 0.91 14 25 0.003 0.16 12.8 0.6 1 21 516 536 516 537 0.95 15 25 0.0013 0.069 14.0 0.6 2 23 571 593 570 593 0.93 16 25 0.003 0.16 12.8 0.6 1 21 599 619 599 620 0.95 17 25 0.0013 0.069 14.0 0.6 2 23 654 676 653 676 0.93 18 25 0.003 0.16 12.8 0.6 1 21 682 702 682 703 0.95 19 25 0.0013 0.069 14.0 0.6 2 23 737 759 736 759 0.93 20 25 0.0052 0.27 12.1 1.7 1 22 765 786 765 789 0.91 21 25 0.003 0.16 12.8 0.6 1 21 795 815 795 816 0.95 22 25 0.00019 0.01 16.6 1.5 1 23 873 896 873 896 0.96 23 25 0.0052 0.27 12.1 1.7 1 22 902 923 902 926 0.91 24 25 0.00064 0.034 14.9 4.3 1 23 932 954 932 954 0.99 25 25 0.01 0.55 11.1 1.8 1 15 962 976 962 985 0.82
Sequence Information
- Coding Sequence
- ATGAACGTGCACGCCGGCGTGAGGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCAcggcgagcgcgcgcgcgcgcgctaCCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGGTGAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGTGACGCCGTACCAGTGCGAGCTCTGCAGCAAGAGCTACACCAGCAAGTTCAGCCTGCGGGGCCACCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACCCGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGCTGCTGAGCCACGGCGAGCGCGCGCGCTACACGTGCGCCGTGTGCCACATGGACTTCTCCACCAACGCGAACCGACACCGACACATGCAGACACACGACCCTAGTAAAAGGCTCTCGTTCACGTGCCATATCTGCAGCAAGTCGTTCACTACCAAAGTCGGCAAGGATGAGCACGTGGTGCACGTGCACCAGCAGGTGCCGCGGCCCAAGCGGAACCGCGCCCCTGCACGCGCACGTGCACGTGCACGTAAACACGGCGACGCCTCGGACGCAAGTGCGAGAGACACTGATGACGCCAATATGGCGTCTTAA
- Protein Sequence
- MNVHAGVRPYQCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARARYPCAVCHMDFSTNANRHRHMQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQLLSHGERARYPCAVCHMDFSTNANRHRHMQVSDAVPVRALQQELHQQVQPAGPPAAEPRRARALPVRRVPHGLLHQREPTPTHAVTPYQCELCSKSYTSKFSLRGHQLLSHGERARYPCAVCHMDFSTNANRHRHMQLLSHGERARYTCAVCHMDFSTNANRHRHMQTHDPSKRLSFTCHICSKSFTTKVGKDEHVVHVHQQVPRPKRNRAPARARARARKHGDASDASARDTDDANMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -