Basic Information

Insect: Hipparchia semele
Gene Symbol: -
Assembly: GCA_933228835.1
Location: CAKOGE010000047.1:2335926-2346726[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.067 3.5 8.6 7.3 1 23 10 32 10 32 0.98

2 28 0.00019 0.0099 16.6 0.5 1 23 38 60 38 60 0.98

3 28 0.0011 0.056 14.2 0.5 1 23 66 88 66 88 0.96

4 28 7.4e-05 0.0039 17.9 3.0 1 23 94 116 94 116 0.98

5 28 0.012 0.63 11.0 2.9 1 23 122 144 122 144 0.97

6 28 0.021 1.1 10.2 0.2 1 17 150 166 150 167 0.93

7 28 0.012 0.65 10.9 6.4 1 23 221 243 221 243 0.98

8 28 0.0012 0.062 14.1 4.3 1 23 249 271 249 271 0.98

9 28 0.077 4.1 8.4 5.9 1 23 277 299 277 299 0.97

10 28 0.0011 0.056 14.2 0.5 1 23 305 327 305 327 0.96

11 28 7.4e-05 0.0039 17.9 3.0 1 23 333 355 333 355 0.98

12 28 0.017 0.92 10.4 5.4 1 23 361 383 361 383 0.97

13 28 0.0026 0.14 13.0 0.6 3 23 474 494 472 494 0.96

14 28 7.5e-05 0.004 17.9 0.6 1 23 500 522 500 522 0.98

15 28 4.6e-05 0.0024 18.5 1.2 1 23 528 550 528 550 0.97

16 28 0.00021 0.011 16.5 5.7 1 23 556 578 556 578 0.98

17 28 0.9 47 5.0 0.9 1 23 584 606 584 606 0.97

18 28 5.8e-06 0.00031 21.4 1.7 1 23 612 634 612 634 0.98

19 28 1.5e-06 8.1e-05 23.2 2.9 1 23 640 662 640 662 0.98

20 28 8.3e-05 0.0044 17.7 2.1 1 23 668 690 668 690 0.97

21 28 0.015 0.8 10.6 3.0 1 23 801 823 801 823 0.99

22 28 0.0019 0.1 13.5 0.6 1 23 829 851 829 851 0.98

23 28 1.9e-06 0.0001 22.9 1.4 1 23 857 879 857 879 0.98

24 28 0.00051 0.027 15.3 0.3 1 23 885 907 885 907 0.98

25 28 0.66 35 5.5 1.0 3 23 915 935 913 935 0.97

26 28 0.00055 0.029 15.1 3.6 1 23 941 963 941 963 0.96

27 28 0.022 1.1 10.1 2.8 1 23 969 991 969 991 0.98

28 28 0.00087 0.046 14.5 2.4 1 23 997 1019 997 1019 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.067	3.5	8.6	7.3	1	23	10	32	10	32	0.98
2	28	0.00019	0.0099	16.6	0.5	1	23	38	60	38	60	0.98
3	28	0.0011	0.056	14.2	0.5	1	23	66	88	66	88	0.96
4	28	7.4e-05	0.0039	17.9	3.0	1	23	94	116	94	116	0.98
5	28	0.012	0.63	11.0	2.9	1	23	122	144	122	144	0.97
6	28	0.021	1.1	10.2	0.2	1	17	150	166	150	167	0.93
7	28	0.012	0.65	10.9	6.4	1	23	221	243	221	243	0.98
8	28	0.0012	0.062	14.1	4.3	1	23	249	271	249	271	0.98
9	28	0.077	4.1	8.4	5.9	1	23	277	299	277	299	0.97
10	28	0.0011	0.056	14.2	0.5	1	23	305	327	305	327	0.96
11	28	7.4e-05	0.0039	17.9	3.0	1	23	333	355	333	355	0.98
12	28	0.017	0.92	10.4	5.4	1	23	361	383	361	383	0.97
13	28	0.0026	0.14	13.0	0.6	3	23	474	494	472	494	0.96
14	28	7.5e-05	0.004	17.9	0.6	1	23	500	522	500	522	0.98
15	28	4.6e-05	0.0024	18.5	1.2	1	23	528	550	528	550	0.97
16	28	0.00021	0.011	16.5	5.7	1	23	556	578	556	578	0.98
17	28	0.9	47	5.0	0.9	1	23	584	606	584	606	0.97
18	28	5.8e-06	0.00031	21.4	1.7	1	23	612	634	612	634	0.98
19	28	1.5e-06	8.1e-05	23.2	2.9	1	23	640	662	640	662	0.98
20	28	8.3e-05	0.0044	17.7	2.1	1	23	668	690	668	690	0.97
21	28	0.015	0.8	10.6	3.0	1	23	801	823	801	823	0.99
22	28	0.0019	0.1	13.5	0.6	1	23	829	851	829	851	0.98
23	28	1.9e-06	0.0001	22.9	1.4	1	23	857	879	857	879	0.98
24	28	0.00051	0.027	15.3	0.3	1	23	885	907	885	907	0.98
25	28	0.66	35	5.5	1.0	3	23	915	935	913	935	0.97
26	28	0.00055	0.029	15.1	3.6	1	23	941	963	941	963	0.96
27	28	0.022	1.1	10.1	2.8	1	23	969	991	969	991	0.98
28	28	0.00087	0.046	14.5	2.4	1	23	997	1019	997	1019	0.97

Sequence Information

Coding Sequence: ATGAGAATCCACACAGGGGAGTACCCTTACGCGTGCCAGTTCTGTGAATACAAATGCAAGTTCAGGTGTAATCTCGTAACACACATGCGAAGTCACacaggtgaaaaacctttttctTGCGACCTGTGCGAGTTTAGGTTTGCGAGAAAAGCCGATTTAGGGAAGCACATCCAAAAACACACGGGTGAGAAACCGCACGCGTGCAAGATATGCGAGTTGAAATTCAGACTCAAAGGCGGCCTTGTCGAACATATGAAGATACATTCGGGCGATAAACCTTTTTCTTGCGAGCTATGCGAGTACAAATGTATAAGGAATAGCGATTTAATGAGGCATATGAAATCGCACACCGGTGAAAAACCCTTTGCGTGCGAGCTGTGCGATTACAAGTCTATAAGAAGGTGTAATCTGTCCTATCACATGACGACACACACGGGTGAAAAACTGTTTGCATGCGAGATATGTCAGCTGAAGTTCTCGACTAAAACTAACTTGAtcACTCCTTTGAACGAGGGGCTTCTGAAGCACTATCTAATCTCAGATGGTACTAAAGCTGAAATTATTCTTCAAAGAACTCCCACTTCGGAACCAGACACTAGAAAACTGTGTAAGCCCAATAAATCCAAACGCAAAACCAAACTTCAAAGGCACGATGAATGGTTTACATGCGATATTTGCAAGTCTAAATACAAGCACAAACTCAGTTTACATCGACACTTGAGAATCCACACAGGGGAGTACCCTTACGCGTGCCAGTTCTGTAAATACAAATGCACGATCAGGAGTAATCTCGTAACACACATGCGGACTCACACAGGTGAAAAACCCTTTTGCTGCGACCTGTGCATGTTTAGGTTTGCGAGAAAATGCGATTTAGTGAAGCATATAAAGACACACACGGGTGAGAAACCGCACGCGTGCAAGATATGCGAGTTGAAATTCAGACTCAAAGGCGGCCTTGTCGAACATATGAAGATACATTCGGGCGATAAACCTTTTTCTTGCGAGCTATGCGAGTACAAATGTATAAGGAATAGCGATTTAATGAGGCATATGAAATCGCACACCGGTGAAAAACCCTTTGCGTGCGAGCTGTGCGATTACAAGTGTATAAGGAGGTGTAATCTGTCCTATCACATGACGACGCACACGGTCGCACCTTTACCATGGGGATTTGAGACAAACGCGACAAGCCAACGTGAAGGTAGCGCGACAACGGCAACCATCGAACAATTTGTCGATGAGGTTAATTGTGAATCTGTATTAAAAACTGATGCAAGTGAAAGTAACGATGCGAACGATGAATGCGAGAGTGAAAAGTTACTGAAAGCTATTCTATATCAAAATTTGGGCGTACAGACCAAAAAAAGACGAGGAACTCGTAAAGGTGAAGCGACGAACACTGTCAAAAAACTTGCATGCGAATTTTGTAAGTACAAAACAAACTACAAGGACGTTCTAGAGCGACACATGAGGATTCACACGGGTGAAAGGCCTTACTCTTGCGAAATTTGCGACTACAGGAGTGCAAGGCGAAGCGATATGGTGCGGCACATGAAAAACCACACAAGTGAAAAACAGTTCGCTTGCGAGCTGTGCGAGTACAAATTCGCGAGAAACAGGGACTTGCTGAGGCACAAGAGAACCCACGATGGTGATAAACCTTTCTCCTGTTCCGTGTGCGAGTACAGGTGCGCGAGGAATTGCGATCTGACACGACACATGAGAACCCACACTGGTGAAACGCCGTACGCCTGTCAGTTGTGCGATTTCAAAGGTAAATTCTACACCAGCCTAGTGGACCACTTGACGAAGCATTACGACAGAAAACCTTTCTCTTGCAACCTATGCGATTACAGATCGACGAGAAGAAGCGATTTGAATAGACACATGGAGACACACTCCAGTAAAAAGAATTACTCCTGTCAGATTTGTGGCCATAAGTTTTCGAGACGCAGGAACCTGGTGAGGCACATGGTAACCCACACGGGTGAAAAACCGCATTCGTGTCCGCTGTGCAACTATCAGTGCGCGAGGAACAGTGACCTGGTCAGACACATGTTAGTCCActctggtgaaaaacctttctcGTGCGAATTTTGCGAGTACAAGTGTGCGAGGAAAGTAGCTCCTCTGCCATGGGGATTAGTGAAAAACTTCACAAGCAAACATCAGAATGAAAATACCGCAACAGTATCCCTCGAACAGGttattaaaaaggaaaaagtaAACGATCAACATGTATCACAACCTACAGTTAGTGGACTAGATAACGCTACTTATGACAGCAATAGTGTACCTAATAGCGCTACGTACGATAGCAACATAGAATGTGAGAACTCATTGAAAAGtattttgtatcaaaatttGGAAACGAGTAACTCTGTCGATGACAAAAAGTTTACATGCAAGTTTTGCGAGTACAAATCTAAGTACAAACTCGATTTGGTGAGACACGAGCGAACCCACACGGGTGAAAAACCCTACGCTTGCAACGTGTGCGAATATAAATCGGCATTAAAAACCAGTTTAGATAAGCACATGAGAACCCACACCGGTGAAAAACCCTTCGCCTGTAAACTGTGCGACTATAAGTTTTCACAGAAGGCCAGCTTAGGCAAGCACATGAGAACCCACACGGGTGAAAAACCTTACGCCTGTGAAGTGTGCGAGTACAAATCCGCGCAGAAAATTAGTTTAGACaaacacatgagaactcacactggtgaaaaaccatACGGTTGTACGTACTGCGAGTTCAAATGTGCAATCGATAGGAGTTTAATAGAACACATGCGTCTTCACACAGGTGAAGAACCGTTCGCTTGCACGATGTGCGAGTTTAAGTGTAAAACCCAACGTAACTTGCGTAGGCACATGGTCATTCACTCTAGTAACAAAACATATTCGTGCAAACGATGCGAGTTCAAATGCGATTCGAGAAAAGGTTTAATAGACCATATGGAAACTCACGCTGGTGAAAAACCCTTTGCTTGTAGTGTATGCGAGTATAGGAGTAACAGAAGGAGTTGTTTAGTGAGACACATGAAAGTTCATCGTGATAAACTGTGA
Protein Sequence: MRIHTGEYPYACQFCEYKCKFRCNLVTHMRSHTGEKPFSCDLCEFRFARKADLGKHIQKHTGEKPHACKICELKFRLKGGLVEHMKIHSGDKPFSCELCEYKCIRNSDLMRHMKSHTGEKPFACELCDYKSIRRCNLSYHMTTHTGEKLFACEICQLKFSTKTNLITPLNEGLLKHYLISDGTKAEIILQRTPTSEPDTRKLCKPNKSKRKTKLQRHDEWFTCDICKSKYKHKLSLHRHLRIHTGEYPYACQFCKYKCTIRSNLVTHMRTHTGEKPFCCDLCMFRFARKCDLVKHIKTHTGEKPHACKICELKFRLKGGLVEHMKIHSGDKPFSCELCEYKCIRNSDLMRHMKSHTGEKPFACELCDYKCIRRCNLSYHMTTHTVAPLPWGFETNATSQREGSATTATIEQFVDEVNCESVLKTDASESNDANDECESEKLLKAILYQNLGVQTKKRRGTRKGEATNTVKKLACEFCKYKTNYKDVLERHMRIHTGERPYSCEICDYRSARRSDMVRHMKNHTSEKQFACELCEYKFARNRDLLRHKRTHDGDKPFSCSVCEYRCARNCDLTRHMRTHTGETPYACQLCDFKGKFYTSLVDHLTKHYDRKPFSCNLCDYRSTRRSDLNRHMETHSSKKNYSCQICGHKFSRRRNLVRHMVTHTGEKPHSCPLCNYQCARNSDLVRHMLVHSGEKPFSCEFCEYKCARKVAPLPWGLVKNFTSKHQNENTATVSLEQVIKKEKVNDQHVSQPTVSGLDNATYDSNSVPNSATYDSNIECENSLKSILYQNLETSNSVDDKKFTCKFCEYKSKYKLDLVRHERTHTGEKPYACNVCEYKSALKTSLDKHMRTHTGEKPFACKLCDYKFSQKASLGKHMRTHTGEKPYACEVCEYKSAQKISLDKHMRTHTGEKPYGCTYCEFKCAIDRSLIEHMRLHTGEEPFACTMCEFKCKTQRNLRRHMVIHSSNKTYSCKRCEFKCDSRKGLIDHMETHAGEKPFACSVCEYRSNRRSCLVRHMKVHRDKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -