Hsem016412.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000182.1:607909-614354[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 45 0.074 3.9 8.5 0.6 2 23 11 33 10 33 0.92 2 45 0.82 43 5.2 1.4 2 23 86 107 85 107 0.95 3 45 0.0062 0.33 11.8 0.2 2 23 135 157 134 157 0.95 4 45 0.082 4.3 8.3 0.5 2 20 178 196 177 200 0.92 5 45 0.00015 0.0082 16.9 1.1 3 23 207 228 205 228 0.96 6 45 0.001 0.054 14.3 2.8 1 23 232 255 232 255 0.96 7 45 0.0047 0.25 12.2 2.9 2 23 258 280 258 280 0.97 8 45 0.0068 0.36 11.7 1.7 1 23 357 380 357 380 0.93 9 45 4.4 2.3e+02 2.9 0.0 2 23 408 430 407 430 0.92 10 45 0.027 1.5 9.8 0.7 1 22 452 473 452 475 0.90 11 45 7.7e-05 0.0041 17.8 2.8 3 23 482 502 481 503 0.94 12 45 0.003 0.16 12.8 2.1 1 23 509 532 509 532 0.95 13 45 2.8e-05 0.0015 19.2 1.4 1 23 537 560 537 560 0.96 14 45 0.76 40 5.3 6.3 1 23 564 587 564 587 0.97 15 45 0.0029 0.15 12.9 0.8 2 23 594 615 593 615 0.96 16 45 0.14 7.2 7.6 2.0 1 23 621 643 621 643 0.95 17 45 0.0035 0.18 12.6 0.4 1 23 691 713 691 713 0.98 18 45 0.015 0.78 10.7 0.7 2 23 784 806 783 806 0.95 19 45 0.0091 0.48 11.3 0.8 2 23 812 834 811 834 0.96 20 45 0.15 8.1 7.5 3.2 1 23 838 861 838 861 0.94 21 45 0.087 4.6 8.2 3.1 1 23 863 886 863 886 0.95 22 45 0.00091 0.048 14.5 2.0 1 23 959 982 959 982 0.96 23 45 1.8 95 4.1 0.1 2 23 1010 1032 1009 1032 0.91 24 45 0.0097 0.51 11.2 0.4 1 23 1054 1077 1054 1077 0.93 25 45 0.00034 0.018 15.8 0.2 3 23 1084 1105 1083 1105 0.95 26 45 0.00016 0.0083 16.9 0.6 1 23 1110 1133 1110 1133 0.95 27 45 0.15 8 7.5 0.3 2 23 1139 1161 1138 1161 0.89 28 45 0.0027 0.14 13.0 6.2 1 23 1165 1188 1165 1188 0.97 29 45 0.54 28 5.7 0.8 2 23 1195 1216 1194 1216 0.96 30 45 0.0012 0.065 14.1 2.7 1 23 1252 1274 1252 1274 0.99 31 45 1.3 69 4.5 0.0 3 23 1303 1324 1301 1324 0.91 32 45 0.0086 0.45 11.4 1.3 2 23 1345 1367 1345 1367 0.96 33 45 0.00032 0.017 15.9 1.0 1 23 1372 1395 1372 1395 0.96 34 45 0.002 0.1 13.4 2.9 1 23 1400 1423 1400 1423 0.97 35 45 0.027 1.4 9.8 1.9 2 21 1426 1445 1426 1448 0.94 36 45 0.019 1 10.3 2.8 3 21 1457 1475 1456 1476 0.95 37 45 0.0056 0.3 12.0 0.7 1 21 1527 1547 1527 1550 0.90 38 45 0.83 44 5.2 0.2 2 23 1578 1600 1577 1600 0.93 39 45 0.00096 0.051 14.4 0.3 2 23 1623 1645 1622 1645 0.96 40 45 3.1e-05 0.0016 19.1 0.1 3 23 1652 1673 1651 1673 0.94 41 45 0.72 38 5.3 5.3 2 23 1678 1700 1677 1700 0.93 42 45 0.00098 0.052 14.4 4.5 1 23 1705 1728 1705 1728 0.97 43 45 1.3e-05 0.00068 20.3 5.2 1 23 1732 1755 1732 1755 0.97 44 45 0.001 0.054 14.3 0.3 2 23 1762 1783 1761 1783 0.96 45 45 8.4e-05 0.0044 17.7 0.6 1 23 1789 1811 1789 1811 0.97
Sequence Information
- Coding Sequence
- ATGTCGCGTTACCATAGAACCAGAGCATGCAAATGTCCCGATTGTAATATGGAGTTTTGGAACTTGGAAAAGTTGGCACGACACCGAGCAAATGTGCATGGGACAAAGAAGTTTAAGTGTCCACATgaagaaaatttattttcagatttaAACGGACCATCAAAGACGCTAAGTCCTAATAAGCTGAGGCGAAGGAATCTGCTGATACTATTCAACAATACTTCCATAATTCCTTTCAAATGTCGTGGAAGATGTAGATGCTTTTTTTGTGGGGAAGAAATACCTATTTACGATGAGCTCAGGAAACATACGAAATCTCACGGACCATGTTCGGAAAATGATCGCTCAATTAGACTAGTCAAAACAGACGACGCAGAAGTGAAAATAGATGTATCTGATCTAACTTGTGAACTATGCAATGAATCATTTACAAATTTAGACGAAATTGTAATACATTTGACTACTAAACATAAACTGCCGTTCGATAAAAATGTTAAGCTACTTATAATGACGTATAGACTAGTCGATTTGCAATGTTTACTGTGTGATCTGAAATTTAGTCAAGTCAGTGAACTAGTCATTCATGTGAATTGTGAACACCCCAGTCAAAGTCTAGATTGTAATGTGTGCCATCAGAAATTTATTAGAAAAGGTTATTTAGATGCCCATATGAGAGTGAAACATAAAAACGATTACAAATGTCTGAAATGCCCAAACAGTTTCTCCACTCATTCAGAATTACAAGAACACAAAATCAAATCACACGTTGCAGTTTGCAATATATGCTTCACAAGATTTTCTACACAAAAAAAGAGGCTGAAACATATGAAAACTGAGCATATGGGTGATGCATTAAAATGTGGATTCTGTCTTAAATCTATGAGTACTCAACTAGGTTTTCTTCGACATGCTGCTAAATGTACGGATAAGAGTACTGTTGATTTTTCTGAAGAAACGTTAGTTATCGACGACGATGATAGAAAACCAGCAGTTGTACAGATTAGGAATAACATAGCTTGCATACTAAATATGTCAACTGCTATTCCATTTAAGTACTTTATGAGTAGATTTAGATGTTTCTACTGCCCAAAAGATTTTACTGATTGTCTAGAACTTCGGGAACATACTGTTATTGAACACCCTATTTGCGATATTAACTTAAAATGTATGAGACTGCGTAACAGACAAGAAGGGTGTGTTAAAATTGATATATCTGTACTATCTTGTAAAGTCTGCTATGAAAATATTCCAAATTTGGAAACTCTTATAGAACATCTAATATTAGAACATAAAGCTCAATATGACAGAACTATAGATAGTAATATACAACCTTATAAACTAGTTAAAGATAACTATCCGTGTCCATTTTGCGGTGATGTGTACACgcattttagtacattattgaAACATGTAGGACAAAATCATACTGACAATAAAAACATTTGTATGCACTGCGGAAAGTCATTCAGGAATTTGCCAAACTTGCGTGTCCATATTTCTAACCATCATAAAACTACTGGTAGTTTCAAGTGTCATACTTGCAGTTTAGAATTCCCCTCAAATAAGTATTTGCAGACACATTTAGGAAGGGCGCATGGGTTAAAAGTTTTCAAGTGCCCGGAATGTAGGGAGAAGTTTACGTCAAACTACACAATGCAAAGGCACATGATTAATTTGCATAGTTCCGGACATAAATGTGCTTACTGCAACAAATTGTTCACGTCCAACTGTTTTATGATGGACCACGTCAAACGGACgcatttgaaggagaaaaatgTCGAATGTCAAATCTGTAACGAAAGATTCTTCGATTCTCAACGTCTGAAAACGCACATGGTTAAACATAATGGAGAGAGGAACTTTCATTGCGATGTTTGTGGAAAGAAATTCCTGTGGAAGAAAAATTTGAGAGGCCACATGTCCTTGCATATAAGAAGTTGTAATCATGACATGACAAATGTACCGTGTAAGAGACCAGCGAAGAAATCTAGCGCCAATAAGTTAAGGAGATCAAATCTTCAGATATTATTCAATAATACATCCATAATTCCATTTAAATGGCGCGGAAAGTACGTATGTTTTTACTGTGGAGAAGATGTTAAAGAATACGATGAATTAAGGCAACATACAAGAAACCATGGCGCATGTTCAGATGACAATCGTGCTCTAAGACTAGTGAAAGCAGCGGATGCTGAAGTCAAAATTGACGTATCAGAAATAACTTGTAATTTATGCTATGAAGAGTTACCAAATTTTGACAATACAGTCGACCATCTAATGGTTAAACATCACTTACCATACGACAAAGATGTGAAATTACCAATAGCACCATATAGACTGTCGGATTTAAACTGTCTGTTCTGtgatcaaaaatttaattatcttAGCAAATTGGTTTCTCATGTTAATACAGACCATCCGAACGACTGTCTAGTTTGCGCTGAATGTAAACAAGAATTCAATAAAAAGAGAGATCTCGACGCTCATTTTCGAACTAAGCACAGAAATCAGTATACGTGTTCAAAATGTTGTTTAAGTTTTCCTACTAACTCTGAACTCTTGAGCCACAAAAGCAATTCCCATCCATTTCTTTGCAACATTTGTTTCAAACCCTTTGTATCGCTCAAGAAACGTTTACACCATATAAAAACAACTCATCTAGACGCAGTTCTCAAATGTGGTTTTTGTTCTAAATCTAGTAACGCGAAAGTATTTCTCGAACATGCTGTTATTTGCAACGTAAACTTAAAAGATTTAAACGAAGTAGTTGTACCTGATGATGATAAAAAGCCTTCAGTTAAACTAATAAGGGATAATATAGCTTGTATACTGAATATGTCTACAGTTGTGCCGTTCAAGTATTTTATGAGTAAGTTCAGATGTTTCTATTGCCCCAAAGATTTCAGCGAGTGTGACGATCTCAAACAGCATACGATAATAGAACATCCCCTTTGCGATACTAAACTTAAATCGATGAAACTACGCAACAGGCATGACGGTGGCATCAAAGTCGATACGTCAACTTTATCTTGCAAAATTTGCTTTGAGAGTTTACAAGACTTAAACACTCTTATAGATCATTTGATCGGTGAGCACAAAATAAATTACGATAAGTCAATTACAGTCAATCTGCAACCTTACAAACTAGCTAAAGACAATTTCCCTTGTCCATTTTGCGGGGAAGTTTACAGGTATTTCAGGACATTGTTAAATCACGTAGGCAAAAGGCATTCTGATAACAAAAACATTTGCGTCCATTGTGGACTAGCGTTTAGGAATTTGCCGAATTTAAGAGCTCATATTGCGCGTCTTCACAAAGTTGCTAATTTCAAATGTGACATCTGCGATTTGCAATTTACGTCGAATAATTACTTGCAAACTCACTTAGGTCGTATTCACGGGAATAAAGTTGTAGAATGTTCGGAATGTAGAGAGAGATTCACATCGGTGTACGAGACGCAGAGGCATAAGATTGATGTGCACAGCACGGGACACGAATGCACGTACTGCCATAAATTGTTCACGAGAAACTCTTTCATGGTCAATCACATAAGACGAACGCATTTGAAAGAGAAGAATGTCCAGTGCGCGGTGTGTCACGACAGATTTTTCGATGCCCAACGCCTGAAGGTGCACATGGTAAAACATTACGgTGAAGGCCCGTACGAGAACTGCACAACTGTGCGGAGAAGGAAAAATTTGCAAACTCTGTTCAACAACACCACCATATTGCCTTTCAAATGGCGCGGGAAGTACCAGTGCTTTTATTGCGGCACGAGTTATACCGAATACCCAGAGTTTAGAAAACATACAAAATCACACGGGCTGTGCAGCTCGAGCGATAACGCTCTAAAAATCATCAAGGGGAACCATACAGAATTAAAAATCGATATATCGGAAATCGCGTGCGAAATCTGTTACGAACCGTTCGCAAATTTCGACGAGATAATCGACCATTTGATTGGCAAACACGATTTGGAATACGACAAAACTATAGATACACCATTCCAGGAATACAGATTGGCCGATGGCAGATGCCATTTATGCGAGCAAGAGTTCACGTATTTCGGAAATCTTGTAACGCACACGAACATGGCACATCCGAAAAATAGTTTCATTTGCGATAATTGTGGGTTAACGTTTAACAAAAAGAGAGACTTGGCTTATCATTTGAGGAATTTTCATAAAGACGGAGGGCATCGCTGCGAAGAATGCTCAGAAGTGTTCTCTACTCGGTTTCTTTTGAATGGACACAAAAAAACATTCCACTTTAGAAGATGCAATCTATGCGATGCCCGATTCCCTTCCTACAAATTGTTGCAGAAGCACATACAATGCGACCACCCAGACGACGGCAGTCAACAATTCTGCTCATACTGTTCCAAAGAATGCAAAAATAAACCGAGTTTAACACAACATTTGAGAAATTGCAAGATGAAAAATCTCAAAGTTACCCTACCGGCATTTCCAGAAGAGACGTTGCAACCGAAAAAGAAAAGGGACATAATACAGATCAGGAAAAACATCCAATGTATTTTAAACATGTCTACAGCGATACCGTTTAGATTTTTTTCGAGATTCTCCTGTTTCTATTGCTCGAAAACTTTCGTCGAATTCGATGATCTCAAAACGCACGTAGTAGCCGAGCATCCTGTGTGCGATTTGAAAGATAAGAGCATGAAGAAATGCAAAGGCGAGAGGATAACTGTAAAAATTGATATTTCTGCATTATCCTGCAAAGTTTGCTACGAACGTATAGACGATTTAGACCATTTGATAGACCATTTGATCTTAAAACACAACGCGACTTACGACAAATCTATAAAGGAATGTTTCGACGCTTTTAAAATCATCAAAGATAACATACCATGTAACATTTGCTCGAATGTGTTCCGATATTTCAGCACACTTCTTCGGCATATTAACTCTGAACACagcaacaataataaaatatgcgaCTATTGCGGGCGTAGTTTCAAAAATGTCGCCAATTTGAACGTTCACATAATCTACGCACACACGGGCGCGTGTGAATGCGACGTGTGCGGAGCGAAGTATAAGAACCAGTGGTGTCTGGGACGGCACAAAGCCAAATGCCACAATGCGAAAGAGTTCCAATGCACGAAATGCGATGAGCGTTTCCAGTCGCAGTATCATAAGCAAAAGCATATGATTAAGGCACACGAAATTGGACACAAGTGCACTTACTGCGGGAAAATGTTCACGAGGAACTCTTTCATGAAGGACCATATAAGGCGGACTCATTTGAAGGAAAAGAACGTTCCTTGTTCGGTCTGCAATGAGAAGTTCTTCGACAATTACCTTTTGAGGTTGCATATGGTTAAACATAAGGGCGAGAGGAACTTCAGCTGTGAGGTATGCGGGAAGGCGTTCCTTAGACGTAGTAATTTGAATTCCCATAAGGAGATGCATAAGAAGTATGGGCATGTTTAG
- Protein Sequence
- MSRYHRTRACKCPDCNMEFWNLEKLARHRANVHGTKKFKCPHEENLFSDLNGPSKTLSPNKLRRRNLLILFNNTSIIPFKCRGRCRCFFCGEEIPIYDELRKHTKSHGPCSENDRSIRLVKTDDAEVKIDVSDLTCELCNESFTNLDEIVIHLTTKHKLPFDKNVKLLIMTYRLVDLQCLLCDLKFSQVSELVIHVNCEHPSQSLDCNVCHQKFIRKGYLDAHMRVKHKNDYKCLKCPNSFSTHSELQEHKIKSHVAVCNICFTRFSTQKKRLKHMKTEHMGDALKCGFCLKSMSTQLGFLRHAAKCTDKSTVDFSEETLVIDDDDRKPAVVQIRNNIACILNMSTAIPFKYFMSRFRCFYCPKDFTDCLELREHTVIEHPICDINLKCMRLRNRQEGCVKIDISVLSCKVCYENIPNLETLIEHLILEHKAQYDRTIDSNIQPYKLVKDNYPCPFCGDVYTHFSTLLKHVGQNHTDNKNICMHCGKSFRNLPNLRVHISNHHKTTGSFKCHTCSLEFPSNKYLQTHLGRAHGLKVFKCPECREKFTSNYTMQRHMINLHSSGHKCAYCNKLFTSNCFMMDHVKRTHLKEKNVECQICNERFFDSQRLKTHMVKHNGERNFHCDVCGKKFLWKKNLRGHMSLHIRSCNHDMTNVPCKRPAKKSSANKLRRSNLQILFNNTSIIPFKWRGKYVCFYCGEDVKEYDELRQHTRNHGACSDDNRALRLVKAADAEVKIDVSEITCNLCYEELPNFDNTVDHLMVKHHLPYDKDVKLPIAPYRLSDLNCLFCDQKFNYLSKLVSHVNTDHPNDCLVCAECKQEFNKKRDLDAHFRTKHRNQYTCSKCCLSFPTNSELLSHKSNSHPFLCNICFKPFVSLKKRLHHIKTTHLDAVLKCGFCSKSSNAKVFLEHAVICNVNLKDLNEVVVPDDDKKPSVKLIRDNIACILNMSTVVPFKYFMSKFRCFYCPKDFSECDDLKQHTIIEHPLCDTKLKSMKLRNRHDGGIKVDTSTLSCKICFESLQDLNTLIDHLIGEHKINYDKSITVNLQPYKLAKDNFPCPFCGEVYRYFRTLLNHVGKRHSDNKNICVHCGLAFRNLPNLRAHIARLHKVANFKCDICDLQFTSNNYLQTHLGRIHGNKVVECSECRERFTSVYETQRHKIDVHSTGHECTYCHKLFTRNSFMVNHIRRTHLKEKNVQCAVCHDRFFDAQRLKVHMVKHYGEGPYENCTTVRRRKNLQTLFNNTTILPFKWRGKYQCFYCGTSYTEYPEFRKHTKSHGLCSSSDNALKIIKGNHTELKIDISEIACEICYEPFANFDEIIDHLIGKHDLEYDKTIDTPFQEYRLADGRCHLCEQEFTYFGNLVTHTNMAHPKNSFICDNCGLTFNKKRDLAYHLRNFHKDGGHRCEECSEVFSTRFLLNGHKKTFHFRRCNLCDARFPSYKLLQKHIQCDHPDDGSQQFCSYCSKECKNKPSLTQHLRNCKMKNLKVTLPAFPEETLQPKKKRDIIQIRKNIQCILNMSTAIPFRFFSRFSCFYCSKTFVEFDDLKTHVVAEHPVCDLKDKSMKKCKGERITVKIDISALSCKVCYERIDDLDHLIDHLILKHNATYDKSIKECFDAFKIIKDNIPCNICSNVFRYFSTLLRHINSEHSNNNKICDYCGRSFKNVANLNVHIIYAHTGACECDVCGAKYKNQWCLGRHKAKCHNAKEFQCTKCDERFQSQYHKQKHMIKAHEIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRLHMVKHKGERNFSCEVCGKAFLRRSNLNSHKEMHKKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -