Hsem014884.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hipparchia semele
Gene Symbol
-
Assembly
GCA_933228835.1
Location
CAKOGE010000178.1:4100187-4116611[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 46 0.36 19 6.3 0.1 1 17 10 26 10 32 0.87
2 46 4.2 2.2e+02 2.9 0.2 1 14 38 51 38 52 0.92
3 46 0.00021 0.011 16.4 0.5 3 23 72 92 71 92 0.99
4 46 0.002 0.1 13.4 1.2 3 23 100 120 98 120 0.97
5 46 3.2e-05 0.0017 19.1 4.2 1 23 126 148 126 148 0.98
6 46 0.00014 0.0072 17.1 5.9 1 23 154 176 154 176 0.98
7 46 0.0017 0.088 13.6 1.8 1 23 182 204 182 204 0.98
8 46 0.0043 0.23 12.3 0.3 1 23 210 232 210 232 0.98
9 46 0.00074 0.039 14.7 0.2 1 23 238 260 238 260 0.97
10 46 0.0075 0.4 11.6 6.4 1 23 288 310 288 310 0.97
11 46 0.0077 0.41 11.5 1.5 1 23 316 338 316 338 0.96
12 46 2.8e-06 0.00015 22.4 4.5 1 23 344 366 344 366 0.98
13 46 0.4 21 6.1 3.5 1 23 372 394 372 394 0.98
14 46 4.6e-07 2.4e-05 24.8 1.3 1 23 400 422 400 422 0.98
15 46 0.0001 0.0054 17.5 3.6 1 23 428 450 428 450 0.99
16 46 0.00013 0.0068 17.1 0.6 1 23 456 478 456 478 0.98
17 46 6.3e-05 0.0033 18.1 0.8 1 23 484 506 484 506 0.98
18 46 0.0002 0.011 16.5 0.7 1 23 512 534 512 534 0.98
19 46 4.5e-05 0.0024 18.6 0.1 1 23 540 562 540 562 0.98
20 46 0.12 6.6 7.7 5.8 3 23 586 606 585 606 0.99
21 46 0.00014 0.0073 17.0 6.0 1 23 612 634 612 634 0.99
22 46 1.2e-07 6.1e-06 26.7 1.3 1 23 640 662 640 662 0.99
23 46 4.1e-06 0.00022 21.9 0.5 1 23 668 690 668 690 0.97
24 46 1e-05 0.00055 20.6 0.6 1 23 696 718 696 718 0.97
25 46 0.35 18 6.3 3.8 3 23 726 746 724 746 0.98
26 46 4.5e-05 0.0024 18.6 0.1 1 23 752 774 752 774 0.98
27 46 0.12 6.6 7.7 5.8 3 23 798 818 797 818 0.99
28 46 0.00014 0.0073 17.0 6.0 1 23 824 846 824 846 0.99
29 46 1.2e-07 6.1e-06 26.7 1.3 1 23 852 874 852 874 0.99
30 46 1.8e-06 9.4e-05 23.0 0.5 1 23 880 902 880 902 0.97
31 46 1e-05 0.00055 20.6 0.6 1 23 908 930 908 930 0.97
32 46 0.35 18 6.3 3.8 3 23 938 958 936 958 0.98
33 46 5.4e-07 2.9e-05 24.6 2.6 1 23 964 986 964 986 0.99
34 46 6.4e-08 3.4e-06 27.5 1.2 1 23 992 1014 992 1014 0.99
35 46 0.00013 0.0069 17.1 4.2 1 23 1020 1042 1020 1042 0.98
36 46 4.8e-06 0.00025 21.6 1.6 1 23 1048 1070 1048 1070 0.98
37 46 6.8e-06 0.00036 21.2 1.9 1 23 1076 1098 1076 1098 0.98
38 46 0.0057 0.3 11.9 2.0 2 23 1127 1148 1126 1148 0.97
39 46 7.6e-05 0.004 17.9 1.4 1 23 1154 1176 1154 1176 0.98
40 46 1.9e-06 0.0001 22.9 2.8 1 23 1182 1204 1182 1204 0.97
41 46 0.0011 0.058 14.2 6.1 1 23 1210 1232 1210 1232 0.99
42 46 1.9e-05 0.001 19.8 4.9 1 23 1238 1260 1238 1260 0.99
43 46 0.00028 0.015 16.1 4.0 1 23 1266 1288 1266 1288 0.99
44 46 4.7e-08 2.5e-06 27.9 2.1 1 23 1294 1316 1294 1316 0.98
45 46 5.1e-06 0.00027 21.5 1.5 1 23 1322 1344 1322 1344 0.98
46 46 0.002 0.11 13.4 3.9 1 23 1350 1372 1350 1372 0.97

Sequence Information

Coding Sequence
ATGAGGACTCACACCGGCGAAAAGCCCTTCTCCTGTGACCTGTGTGAGGAGAAATTTGCACAAAAGAGTCCGCTGATCATACCCATGAGGAGACACACGGGTGAAAAACCTTTCTCCTGTGACCTGTGCTCGGCGAAATTCGCACAGAAGAGCGCACCCTCGCCGAAGACATGCCCCCAGCGGCCGCGCGGCGCCGCACAGACACCGCACGGTTGCAATGTCTGCGGCTACACAAGTCTAACCAAGAGCAATTTAACCATACACATGAGAACGCACACGGGAGAAAAGCCGTTCGGTTGCGACCTCTGTCCCGCGAAGTTCGCACAAAAGACTCTCTTAACCAATCACTTGAGACATCACATCGGCGACAAACCTTTCTCCTGTGCAGTTTGTCAAGTGAGATTCACAAGACAGTGCTATCTGACGCGCCACATGAGAACACACACGGGTGATAAACCTTTCTCATGCGACCTGTGCTTCACGAAATTTTGTCAAAAGAGAAATTTAACTCTACACATGCGAACTCACACCGGCGAGAAACCTTTCCCGTGTGAGATCTGCGAGGCGAGGTTTTTGCGGAAGTGCTATTTAGAGAGTCACATGCGGACCCACACCGGGGAAAAGCCGTTCTCTTGCGGCCTGTGTCCCGCGAGATTCGCGGAAAAAAAGTCGCTCTCCATTCACTCAAGAACCCATACCGGCGAAAAACCTTTCGCATGTGGGCTCTGTTCCGCGAGATTCGCACAAAAGATTTCTTTAACCAGTCAtgtgagaactcacactggtgagaaACCTTTCTCTTGCGCTCCGTCGCCGAAGGCGTGCCTGCAGACGCCGCGCAGCGTCGTCGCGCGCCGCCCGCACTGCTGCAACGTGTGCGGGTACACCTGCCTCTACAAGAGCAACCTGGTCATACACATGAGGACTCACACCGGAGAGAAACCCTTCGCCTGCTCGATGTGCTCCGCCAAGTTCAAACAGAAGAGCGACCTGACATTTCACGTCCGGAATCACACCAACGAGAAGCCTTTCAGCTGCCACATCTGTCAGGTCAAGTTCATCCGGCAGTACTACCTCACGAGGCACATGAGGACCCACTCCGGCGAAAAGCCGTACTCCTGCGAACGGTGCCCGGCCAGCTTCACGGAGAAGTGTCGGCTGACTTTCCACATGAAGAGTCACACCGGCGAGAAGCTGTTCTCCTGCGACATATGCAACGTGAAATTCATCCGTCAGTCGTACCTGACGAGGCACATCAGGACTCACACCGGTGAAAAGCCGTTCACCTGTCCCGAATGCCACAACCGGTTCTCCCAAAAGAGCAATCTGATCTTCCACTTGAGAACCCACACCGGTGAGAAGCCTTTCACCTGCGACATCTGCGACGAGAAGTTTCTGCGGAAGCCCTACCTGATGAGTCACATGCGGATTCACACGGGCGAGAAGCCCTTCTCGTGCGAGCAATGCGCCGCGAAATTCGCGCAGAAGAAGACCCTCACTATTCACATGAGGACGCACACGGGTGAAAGGCCTTTCTCCTGCGACCAGTGTTCCGCGCGATTCGCACAGAAGAGTTCTTGGGTCACCCACCTGAGGACGCACTCGGGCGAGAGGCCTTTCATCTGCACCCTCTGCCCCGCGAAGTTCGCGCAGAAGAGCGCCCTGACCACCCACGTCAGAATTCACACCGGCGGCCCGTCGTCGCCGCGGCGCGCGCGGACCGCACGCGGCGCCGCAGCGAAGCGACCGCACGGCTGCAACTTCTGCGGCTACACGTGTCTAAAGAAGTGCAACCTGATAACGCACATGCGGACTCACACTAGAGAGAAACCGTTCACGTGCAGCTTGTGCCACGTGAAGTTCGCGCAGAAGAGTCACCTCACACTCCACACGAGAACTCACACCGGTGAGAAACCGTTCACCTGTGAGGTTTGTGAGGAGAAGTTTGTGAGGAAATCGAATTTAACGAGTCACATGCGAACTCACACCGGCGACAAACCGTTCGCCTGTGAAGTGTGCTCGGTCAGGTTCACACAAAAGAGCAATCTAAACCTTCACATGAAAatacacactggtgaaaaaatGTTCGCCTGCGACCTCTGCGAGAAGAAATTCGTCCGAGCGCTGTATCTGACGAGGCACATCCggactcacactggcgaaaaaccttacgGTTGCAACCTATGTTCCGCGAAGTTTACGGAAAAATGCCACCTACCCATCCACATGAGAAAGCACTCGGGCGAGAGGCCTTTCATCTGCACCCTCTGCCCCGCGAAGTTCGCGCAGAAGAGCGCCCTGACCACCCACGTCAGAATTCACACCGGCGGCCCGTCGTCGCCGCGGCGCGCGCGGACCGCACGCGGCGCCGCAGCGAAGCGACCGCACGGCTGCAACTTCTGCGGCTACACGTGTCTAAAGAAGTGCAACCTGATAACGCACATGCGGACTCACACTAGAGAGAAACCGTTCACGTGCAGCTTGTGCCACGTGAAGTTCGCGCAGAAGAGTCACCTCACACTCCACACGAGAACTCACACCGGTGAGAAACCGTTCACCTGTGAGGTTTGTGAGGAGAAGTTTGTGAGGAAATCGAATTTAACGAGTCACATGCGAACTCACACCGGCGACAAACCGTTCGCCTGTGAAGTGTGCTCGGTCAGGTTCACACAAAAGAGCAATCTAAACCTTCACATGAGAatacacactggtgaaaaaatGTTCGCCTGCGACCTCTGCGAGAAGAAATTCGTCCGAGCGCTGTATCTGACGAGGCACATCCggactcacactggcgaaaaaccttacgGTTGCAACCTATGTTCCGCAAAATTTACGGAAAAATGCCACCTACCCATCCACATGAGAAAGCACACTGGCGAGAAGCCTTTCACCTGCGACCTGTGCTCCACGAAATTTTCTCAAAAGAGCAATTTAACTctacacatgagaactcacaccgGCGAGAAACCTTACTCCTGTGAGATTTGCGAGGAAAAATTCGTGAGAAAGTCCAATTTAACGACTCACATGAGAacccacactggtgaaaaacccttCACCTGCGATCAATGTTACACGAAGTATTCCCAAAAGAGTCACTTAGCGTCACATATGAGCACGCACACTGGAGTGAAGCCCTACTCCTGTGAGCTGTGCAAGGAGAAGTTCGTACGAAAGTCGTACCTATCGACTCACATGAGAATACACACTGGTGAGAAACCCTTCCCCTGCGAAGTATGCTCTGCCAAGTTCACTCAGCGAAGTCATCTAACTACCCACATGAAAATTCACACCGGACAGAAGTACCTCACTTGCGCCGTTTGCGCTCCGGCGCGTGCGGCGTCGCTGCGGCGCGCGCGGGCCGCGGCGCCGCAGCGCTGCGGACAGTGCGGCTACTCGTGCAAGTACCGCAGCGTGCTGGTGGTTCACACGCGCTCCCACACGGGCGAGAAGCCCTTCCCGTGCGCGCGCTGCCCGCTCACCTTCAAGACGACGAGCCACCTGCGCGCGCACGCCAAGACGCACACAGGCCTCAAACCACACGCGTGCCCCCACTGCCCCGCCAAGTTCGTGCGCAACAGCTACCTGACCAACCACATGCGCACCCACACGGGCGAAAAACCCTACACGTGCCACGTATGCCACTCAAAGTTCCCAAAACGAAACAGCCTAACCGACCACATGAAAACGCACACCGGCGAAAAGCCCTATACCTGTACCACCTGCAACCTCAAGTTCTCCCAAAAATGCAACCTAAACGATCACATCCGCACCCACACGGGTGAAAAACCCTACACGTGCGACGTATGCCACTCGAGGTTTTCGAAAAAGAACAGTCTGTCGAGTCACATGATGACCCACACGGGTGAGAAGCCATTTTCGTGTGACGTGTGTCAGAAGGAGTTTAGAAGGAAGAGTAACTTGACGGAGCATATGCGGACTCACACCGGCGAAAAGCCTTACTCGTGCGAGCTGTGCGGCAAGGAGTTCCGCCACTCGAGTAAGTTGACGGAGCACGTGCGTGCTCACACGGGTGAGAAGCCCCACTGTTGCGACGTGTGCCTCGCGAGGTTCGCGCAGAAGAGATATTTAACTGCGCATATGAAGACTCACGGGGGAAAGAAGGTTAATAGCCTAAGTTAG
Protein Sequence
MRTHTGEKPFSCDLCEEKFAQKSPLIIPMRRHTGEKPFSCDLCSAKFAQKSAPSPKTCPQRPRGAAQTPHGCNVCGYTSLTKSNLTIHMRTHTGEKPFGCDLCPAKFAQKTLLTNHLRHHIGDKPFSCAVCQVRFTRQCYLTRHMRTHTGDKPFSCDLCFTKFCQKRNLTLHMRTHTGEKPFPCEICEARFLRKCYLESHMRTHTGEKPFSCGLCPARFAEKKSLSIHSRTHTGEKPFACGLCSARFAQKISLTSHVRTHTGEKPFSCAPSPKACLQTPRSVVARRPHCCNVCGYTCLYKSNLVIHMRTHTGEKPFACSMCSAKFKQKSDLTFHVRNHTNEKPFSCHICQVKFIRQYYLTRHMRTHSGEKPYSCERCPASFTEKCRLTFHMKSHTGEKLFSCDICNVKFIRQSYLTRHIRTHTGEKPFTCPECHNRFSQKSNLIFHLRTHTGEKPFTCDICDEKFLRKPYLMSHMRIHTGEKPFSCEQCAAKFAQKKTLTIHMRTHTGERPFSCDQCSARFAQKSSWVTHLRTHSGERPFICTLCPAKFAQKSALTTHVRIHTGGPSSPRRARTARGAAAKRPHGCNFCGYTCLKKCNLITHMRTHTREKPFTCSLCHVKFAQKSHLTLHTRTHTGEKPFTCEVCEEKFVRKSNLTSHMRTHTGDKPFACEVCSVRFTQKSNLNLHMKIHTGEKMFACDLCEKKFVRALYLTRHIRTHTGEKPYGCNLCSAKFTEKCHLPIHMRKHSGERPFICTLCPAKFAQKSALTTHVRIHTGGPSSPRRARTARGAAAKRPHGCNFCGYTCLKKCNLITHMRTHTREKPFTCSLCHVKFAQKSHLTLHTRTHTGEKPFTCEVCEEKFVRKSNLTSHMRTHTGDKPFACEVCSVRFTQKSNLNLHMRIHTGEKMFACDLCEKKFVRALYLTRHIRTHTGEKPYGCNLCSAKFTEKCHLPIHMRKHTGEKPFTCDLCSTKFSQKSNLTLHMRTHTGEKPYSCEICEEKFVRKSNLTTHMRTHTGEKPFTCDQCYTKYSQKSHLASHMSTHTGVKPYSCELCKEKFVRKSYLSTHMRIHTGEKPFPCEVCSAKFTQRSHLTTHMKIHTGQKYLTCAVCAPARAASLRRARAAAPQRCGQCGYSCKYRSVLVVHTRSHTGEKPFPCARCPLTFKTTSHLRAHAKTHTGLKPHACPHCPAKFVRNSYLTNHMRTHTGEKPYTCHVCHSKFPKRNSLTDHMKTHTGEKPYTCTTCNLKFSQKCNLNDHIRTHTGEKPYTCDVCHSRFSKKNSLSSHMMTHTGEKPFSCDVCQKEFRRKSNLTEHMRTHTGEKPYSCELCGKEFRHSSKLTEHVRAHTGEKPHCCDVCLARFAQKRYLTAHMKTHGGKKVNSLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-