Hsem014999.1
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000179.1:533185-533949[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-08 1.7e-05 24.8 0.0 1 44 18 61 18 62 0.91 2 2 5.1 1.2e+03 -0.4 0.0 24 37 84 98 82 104 0.86
Sequence Information
- Coding Sequence
- ATGCCACGAGATTATAATAGGCCTGTTGGATGCAGGTCTTACAAGAATTATACTGAAGAAACATTACAAAAAATTTTAGACGAAATTAAATCAGGTAAAATCTCAACGCGGGCTGCATCCGAAAAATATGGCATTCACAGAAACActttatcatcaaaattaaaAGGCAAAGCACCGCTGAAACACGGAGGTCAAACTGTGTTCACTGAAGAAGAAGAACTTGCTTTGATATCGCACATTACTGCTTTGTCAGCCTTTGGATTTCCAGTAACAACAATAGAGCTGCGCTGCATTGCTAAGTCACAGGGTAAAAAGGTGCCGAAATTCACTGACAATTTGCCAGGCAAAGAGTGGGTGCATTCGTTTTTAAGGCGCCATAAATCACTGTTGTCAAATCGAGTGGCTAGGAATATAACACATGGACGAGCGGAAATAAATGAAGTTGTTGTTAACGAGTTTTTCGATAACTTTTTTAGTGATTGCGGGACCAATTTCATCGGCACGAATAATTATCTTAAAGACGTCGTTAGCCAgctcaaaaattcaaatgacgaaATCAAGCAATCCTTGGCTCGTCATCAAATAAACTGGCATTTCAATCCTCCTTCAAGCCCTCACATGGGTGGTTTGTGGGAAAATGCGGTCAAATCCGCAAAAATAATCATCGCTCGCATTATCGGCGAACGTGCACTTTTCTTCGAAGAATTGGCCACAGTCTTTACAAAGGTAGAAGCAGTTCTAAATTCGCGGCCGTTATGCAAATGA
- Protein Sequence
- MPRDYNRPVGCRSYKNYTEETLQKILDEIKSGKISTRAASEKYGIHRNTLSSKLKGKAPLKHGGQTVFTEEEELALISHITALSAFGFPVTTIELRCIAKSQGKKVPKFTDNLPGKEWVHSFLRRHKSLLSNRVARNITHGRAEINEVVVNEFFDNFFSDCGTNFIGTNNYLKDVVSQLKNSNDEIKQSLARHQINWHFNPPSSPHMGGLWENAVKSAKIIIARIIGERALFFEELATVFTKVEAVLNSRPLCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -