Hsem008702.2
Basic Information
- Insect
- Hipparchia semele
- Gene Symbol
- -
- Assembly
- GCA_933228835.1
- Location
- CAKOGE010000047.1:1506872-1509415[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-10 1.2e-07 31.7 0.0 2 42 16 56 15 59 0.90 2 2 1.9 4.7e+02 0.9 0.1 24 40 750 766 750 768 0.89
Sequence Information
- Coding Sequence
- ATGGTACGAAATTACAAGAGAAGAACAAATAAAGGTTCCTATGATAAAGATCAATTGCGCGAAGCTGTATTGGCAGTACAAAATGGAACTTTAAGTGGTTATAAAGCTTCGCAAGTGTATGGAATTCCTAGAATGACTATTATGGACCACGTACATAGAAAAAGAAGCACAAACAATATTGGGAGAAAAACTACTCTGTCTTCAGAAGTTGAAAAAAGTCTTGCTTCATGTCTCCATACTATGGAGAAACATGGCTTTGGACTTACTAGGGCAGAAGTTTTAGAGATGGTTGgagaatttataaataaaaataatatactgaCTTCGTTTAAAAATGGCATACCAGGGAAGGAGTGGTTTGTTTCATTTGCAAAACGTCATGGTTTATCAATAAAAAAGCCTCAGGGTGTGGAGTATGCCCGAAAAACTGCTATAGATCCATATGTGGTTTACCCATATTTTGACTTGTTAGAAAAAACCATAAATGAATTAGGTCTAAGAGACAAGCCACATGCCATCTGGAACTTGGATGAAACAAGTTTTTCAAAGGATCCTTCAAAAACAAAGATCGTTGGAGTCAAAGGCTATGCGGCAACTAGAGTCATTGCTACGCCTGGGAAAGATAATACGACGGTCCTTCTTGGTGCTAGTGCGGCTGGGCAAAAAACACCCCCATTAATCATTTTCAAAGGCAAGAATGTGTGGGATGAGTGGACGTCTCCTAATGCTTATCCAGGTACAACATATGCCGCTACAAAGAATGGCTGGATGGAATCTGAAGTGttcgaatctttttttaaaaaaacgttTCTGCCCACGATTGGCGACCAACGTCCAGTTCTTTTAATTTATGACGGCCACTCCACACATGTTGGCTTAAATATAATCGAAGAAGCACGAAGAGCTAATGTTACAATTATAAAGATACCAGCCCATACCAGTCATGTATTACAGCCACTTGATGTTGCTGTGATGAAGTCTTTTAAGAATCAGTGGGATCTAAAGTTAGTACAATGGCAAAGACTTAATATAGGTACTCCACTGCCAAAAAAGGAATTCGCTCGATTAATTGGATCTATATGGACAGAAATAAATCCCCAAGTACTGCGCAACGGGTTTAGAAAAGCAGGCATTTATCCAATTAATCGCAATGAAATTCACCATTGTATATTCGATCCTTTGCAGTTAAAGCGATGGCAACATAGTATTTTAAAACCTGCACAGCCAAAAAAGGAACCACAAACTTTGTTAATCTTTGCTCTAAACTGCCTTAATGAGAACTTATTTACTGTATGCAAAGATAATCAAGAAATTACATTGACAGCTATAGATGACAATGACTTGGTGCAAACATTAGCCGAAGACAAGAACATCTCATTTGAAGAATTGCTTTTACAAAAAGTTAAACGTGGTGACAACTCTTCAAAAACAAAGAGGCGAAAAGTGGCATCTGGTGCTGAAGTTATAACCCACGATGACGTGATCAAGTTTAAAAAAGACgaacaaagtaataaaaaaaatacaaaaggaaAAAAACAAACTAATCCGTCAACAAAACTTACAGataatgtaattttgttaagtgATATATCAAGGAATGATTCTCAGTTGGTGCCTTTTGCCACTCGAAATTTTAAAGACATGCCTATTTGCTTGCAAAAACATGGACTAGACACTCctaaagttaaaattttgtccaatattgtaataaaaaaagctaCAAAGCCCAATGAAGATCAGTTACGACCAGAACCAGGACCTTCGGGAATAAAAActtcaaaatcaataaaaaacaaaactagtAAACGCAGCGTTACTTCATTTAAATTCTCTGCAGCTAAAGATTTACCAAACATGACGatgacatataaaaaaaaaggaaatggcAAGAAGAGTATTGGAAAAGAAAACAAAGGACCGACCAACCTAAAAGAAACTGATAACAACTTCGATAATTGCAAACCTGTTGaattgaaaaaccaaaaaaaactaGACATTTCCAGATCGAGTTCAACTACCAGTGTGTCTGGAACATGTAGCTACCATAGCGACTCCGACATAGTAAATGTTAGTTTCGATTATGAGACTAATGATGATGAATGTTCGGATATCTTACATCAAAACGCAATTAATGTACCTGATATGGAATATGTTGTGACTAAAATCAATCAAAAGACTGAAATTGACAGTAGCTTAAGAGATAAGCGCAAAAATCATGACTGTGAAGTTAACCTTAAGGCGacagaaaataaatatagcATCAATGACCATGTTTTAGTAAGATACTATAACAGAAATAAGTGGACTTACTATGTTGGCATTATCGAAAATATAAGTATTCGGAATGgagaatttttttacaatgtcaGATTTTACAAAACGATCAAAAAACCGAACCTTATTTTCAAGATgactaaaaaattaattgatcGGGATGATGTTCCTGGTATATCAATCGTCAAAAAGATTGACTTaaccaataataaacaaatgtTGAACAGCTTTGTTTTATCATGTGAGGATGATGAGCTTTATTTTAGCTAA
- Protein Sequence
- MVRNYKRRTNKGSYDKDQLREAVLAVQNGTLSGYKASQVYGIPRMTIMDHVHRKRSTNNIGRKTTLSSEVEKSLASCLHTMEKHGFGLTRAEVLEMVGEFINKNNILTSFKNGIPGKEWFVSFAKRHGLSIKKPQGVEYARKTAIDPYVVYPYFDLLEKTINELGLRDKPHAIWNLDETSFSKDPSKTKIVGVKGYAATRVIATPGKDNTTVLLGASAAGQKTPPLIIFKGKNVWDEWTSPNAYPGTTYAATKNGWMESEVFESFFKKTFLPTIGDQRPVLLIYDGHSTHVGLNIIEEARRANVTIIKIPAHTSHVLQPLDVAVMKSFKNQWDLKLVQWQRLNIGTPLPKKEFARLIGSIWTEINPQVLRNGFRKAGIYPINRNEIHHCIFDPLQLKRWQHSILKPAQPKKEPQTLLIFALNCLNENLFTVCKDNQEITLTAIDDNDLVQTLAEDKNISFEELLLQKVKRGDNSSKTKRRKVASGAEVITHDDVIKFKKDEQSNKKNTKGKKQTNPSTKLTDNVILLSDISRNDSQLVPFATRNFKDMPICLQKHGLDTPKVKILSNIVIKKATKPNEDQLRPEPGPSGIKTSKSIKNKTSKRSVTSFKFSAAKDLPNMTMTYKKKGNGKKSIGKENKGPTNLKETDNNFDNCKPVELKNQKKLDISRSSSTTSVSGTCSYHSDSDIVNVSFDYETNDDECSDILHQNAINVPDMEYVVTKINQKTEIDSSLRDKRKNHDCEVNLKATENKYSINDHVLVRYYNRNKWTYYVGIIENISIRNGEFFYNVRFYKTIKKPNLIFKMTKKLIDRDDVPGISIVKKIDLTNNKQMLNSFVLSCEDDELYFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091778;
- 90% Identity
- iTF_01091778;
- 80% Identity
- -