Hkul001002.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000052.1:2409415-2413319[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2e-05 0.00091 20.2 0.1 1 23 4 26 4 26 0.98 2 20 0.047 3.5 8.9 1.6 3 23 39 59 38 59 0.96 3 20 1.3 1e+02 4.3 1.1 2 23 71 92 70 92 0.96 4 20 0.0011 0.081 14.0 1.6 1 23 98 120 98 120 0.98 5 20 0.81 61 5.0 1.8 1 23 145 167 145 167 0.94 6 20 0.012 0.88 10.8 5.7 1 23 178 200 178 200 0.97 7 20 0.092 6.9 8.0 1.1 1 23 207 229 207 229 0.97 8 20 0.16 12 7.2 0.2 7 23 254 271 250 271 0.92 9 20 0.0016 0.12 13.5 1.5 1 23 291 313 291 313 0.97 10 20 0.17 13 7.1 3.0 1 23 320 342 320 342 0.95 11 20 7.5e-05 0.0056 17.7 1.9 2 23 352 374 351 374 0.97 12 20 0.0046 0.34 12.1 1.7 1 23 407 429 407 429 0.97 13 20 0.76 57 5.1 0.5 2 20 433 451 432 453 0.92 14 20 0.06 4.5 8.6 2.1 2 23 472 494 471 494 0.95 15 20 4.2e-05 0.0032 18.5 2.5 3 23 540 560 538 560 0.98 16 20 0.087 6.5 8.0 0.3 2 23 571 593 570 593 0.93 17 20 0.3 23 6.3 2.6 3 23 611 628 609 628 0.86 18 20 0.079 5.9 8.2 1.2 3 23 703 723 701 723 0.94 19 20 0.037 2.8 9.2 1.8 2 23 734 756 733 756 0.96 20 20 0.36 27 6.1 1.2 2 19 772 789 772 792 0.76
Sequence Information
- Coding Sequence
- ATGAGGGGGTTCACTTGTCCCATCTGCGGTAAGACCGTCGAGACTTTGGAAAATTATCAACTGCACATGAATGAGCATTCTACCGGATCTGGAATGCCAATTGACAATTCTCTGTGCCTGCTGTGTAACCAAAGCTTTGAGTCAACGTTACACCTCAACAATCACTTACAGGGGCACGCACAGCAAAGCCTGAGGGACCCCACCTCCCTTGTCTGCTGCATCTGCAAGCTGAGGGCCAAAAACTTTCGGGGCTTGTACGCCCACTTAAAGTGGCACAGGCAGACCACTGACTTCTCTTGCCGGATTTGCAAAATGAATTTCGCCTCCAAGACGGCGTACGTGTCCCATCAGAAGACCCACCTTTTCAATAGGGACAGGGATGGGGACCGATTGATATCCACAGATTTCATTTCAGAAGCCACTCCGTCCGGGCACCAGTGCAAAATCTGCCAGAAGTTCATGTTGAGCACGGCTTCGCTCAAGAGACATCTCATTTGGCACGCTGGAAAAAATTCCATACCCAAACCCAATTACTTCTGCAACGCCTGTCACAAGGCTTTCACCAACAAGTACGATCACAAGTTGCACATGCGCGTCCACATCCAGTCCGGCGGGAAGCATATCTGTCCCATCTGTATGAAGTACATGAAGTCTGCCGCTCACCTCAGCATCCACATCCAGACGCATTCCGATGCCGTCGACGCCCCTCTGAAAACCAAATACAAAAAGGTGAAGACGACAGTCCCCTGTCCCGTGCGCGACAGAGAATTCTCTCATCAGGCCATGCTCAACAAACATTTGCAGAGCGCCCACCCCGGTAGTAAGATGGTGAAGAAGAACGACCCGGATGCGGAAACCGTCGAGAAGAATCACGTGTGTACTATTTGCGCCAAAGAGTTCCCGAGCGAGCACCGCCTCACTAGACACTTGGCCATGCACAACATGAAGGTATCATTCTTCAAGTGCAAGATCTGCGACAAAAAGCTCAAGTCTATAAAGGCTCACCGGACACACATCAAAGGGCACATGTTTCAGAAGTACCCAGTCCCGGTTAAGTGTGATCACTGCGACGAGAGCTTTGCCCGGAGGCTGGATCTGCACCGTCACCTCATCACAGTCCACGACATTACCGAGAGCTACACCGCAGTGATTGGGCCTGAACACTACACCAACACCCTCGAGAAGTCCAAAAAGTTTTGCTTGCAGGATCTCGGCGGCTATCAGTGCTCGCTGTGCAACAAGTTCCTGTCCGGCGAGAACAGTTTCCAGCGCCACATGGAATTTCACAACACGATGCGGTGCAATTACTGCTTTGAATATTTCAACAGCAAGATATTCTTGGACGCCCACACCACTTACAGTTGCGACCGCAAGAAGGTGCTCGGGGTCTGCGATCCTTTTGACAGGAGGCTCAAATGCCACATCTGCTACAAACCGTTTTCCATAGCCGTCAAATTGCGGTGCCATCTGAGAGTGGCGCACGACACCGAACAGACAAACGGAGTCAACTCCGCGGGCGCGGAAACGTCCCTCTGCGACTTCTGTTTCAATGAATTCCCTAACGAAGCGCATATGCTGAAGCATAAGAGATGTCACACCCGGACCGGTTTCTTCGGCTGTAAAATGTGTCCGAAAAAGTTTTCTACGCCGACTTTGTTCCAACGGCACAGAAAAAGGCATCTCTACGCCATCAACGTTGACAATCCGACCAAGTGCGAGCACTGCGATGAAGCTTTCCCCGCTTACAATAAATACATTCTGCATCTGAAGGCGGCCCACGACATCGACACGGACTGGCTTATCCCCCCTAAACCGTCGCCCGCTCAGAACTGCACCATCTGTAACAAGGACTTCAGTAATCTGCACAATCACCTCATGTACCACGAAAAGTACAAATGTCCCAAGTGCTGCGAGTATTTCTTGTCCGCATCTAAATTTCAAGGTCACTCTTGCAGCTTTGACAGCGAAGGCGAACAGGAGACCGCGGCTGCGACTGGCCGGGACTCTCCCGACTATCAGGAGTGTGATTTTTGTTTCAAGCCCATCAACAAAGTCTCGACGGCTTCCCGCCATTTCACAAATCACACGAAGATCGCTCACTTCGGTTGCCGATTCTGTGATAAAAAATTCACAGTCATGTCCGCCTTCAACACGCACGGCTATTCGCACAGGCACCGGACCTACAAGAAAAATCCGCTCAGATGCCGACACTGCGGAGATTCGTTTCACCGTTACGCCGCCTACGTAGCTCACCTCCGCTCCATCCACGATGACCACGAGACGTTGCTGTTTAAACCTCAACTCCAAGAAGAGGAATGCGCCATATGCAAAAAGACCTTTTCCAACGTGAGCTTGCACTATAAGCATCATCTCAATTTCAAATGCAACGTGTGTCAAAAGTATATATTGTCAGAGAAACTGTTCTATGAGCACGCCTGCAACGATCCTAACGCTGATTCCGGCCTGGTCGTTGAGTATCCTGACGACATCGCAGCTCTGGCTGTGCCGAGATACTTTGACGAATCTGAAATGAGACACCGCGACGATTCCCCCCTCTTCACCGAAGAATACTTCAAAGAGAAACTTGGCGAGAATTACAATTTCGGGGAAAATTCAATAGACATCGACGATTCAACTCTCGATGAGTCAATTTTGGGCACCGACATGACCGACACCTCGATGTTTAATCAACAAGACACCTTGGTTTCTATACCGGACAGATTTTTCGACGCCGATACTTCCAACCAAAGTTCTTCTTTCGATAATTGCACTCCGATAATATCTTCGACTGTCTCTTTGAGCTTGGATGCCGGAAAGTCTATGGATAAATCGCACTCAATTGATACTACTGTTGATAATGAAGATTCGAGTAAATCTAATAACGATGATTTATTCATTCTAGGAGATACGGATGTAATTGAACTGGACGATTCCGTATGCCATGAATCCACAACGGTAAATGTAGATTCGTCTCAATTTACAAATCCTTCATGTATTGAGTCTATCGTCACAGATGCGGATATATCGGCTCCGGATAATTCCTGTTGCGGAGAACCCGTTGAAGATAGTAAAGATACTTCCGCATTAGAGGATTCAAAATGTATTGTAAATAATGCAGACGTTTCCGAAGGAAGGGAATCCATCTCTGTTGACGCTGTTATAAAAATTGAAAACTGCAATGCTGAGTGTACGGATGCGTTGCCTTTGATGGATTCTTCAGAAAATAAAAAGGATCCGAAATTAGATGAAGAATTATGTATATTATCAAATGCTACTGTGACAAGTGAGTCTTGTGATGGTAAATTATCCGAATTGAAGACTGCGGATATCTACGAATCGGGTTGTACCAAAGTGAATGAAGTACTGGATCAAAAATCTAACAGTGAAAAGGTTTCTGTCAAGATTCTCGACAATTCTATAAGCCCGTTGAATGTGTTGAACGCTATAGACGCTAAGAGTGTCGTCGCAGAGAACTTTGATCAGTCGTCGCAGGAGATGTCTACGCCTTTGATTTCGGAGAACGCCGGCATTGAAGTCGACGGAGCAACATAG
- Protein Sequence
- MRGFTCPICGKTVETLENYQLHMNEHSTGSGMPIDNSLCLLCNQSFESTLHLNNHLQGHAQQSLRDPTSLVCCICKLRAKNFRGLYAHLKWHRQTTDFSCRICKMNFASKTAYVSHQKTHLFNRDRDGDRLISTDFISEATPSGHQCKICQKFMLSTASLKRHLIWHAGKNSIPKPNYFCNACHKAFTNKYDHKLHMRVHIQSGGKHICPICMKYMKSAAHLSIHIQTHSDAVDAPLKTKYKKVKTTVPCPVRDREFSHQAMLNKHLQSAHPGSKMVKKNDPDAETVEKNHVCTICAKEFPSEHRLTRHLAMHNMKVSFFKCKICDKKLKSIKAHRTHIKGHMFQKYPVPVKCDHCDESFARRLDLHRHLITVHDITESYTAVIGPEHYTNTLEKSKKFCLQDLGGYQCSLCNKFLSGENSFQRHMEFHNTMRCNYCFEYFNSKIFLDAHTTYSCDRKKVLGVCDPFDRRLKCHICYKPFSIAVKLRCHLRVAHDTEQTNGVNSAGAETSLCDFCFNEFPNEAHMLKHKRCHTRTGFFGCKMCPKKFSTPTLFQRHRKRHLYAINVDNPTKCEHCDEAFPAYNKYILHLKAAHDIDTDWLIPPKPSPAQNCTICNKDFSNLHNHLMYHEKYKCPKCCEYFLSASKFQGHSCSFDSEGEQETAAATGRDSPDYQECDFCFKPINKVSTASRHFTNHTKIAHFGCRFCDKKFTVMSAFNTHGYSHRHRTYKKNPLRCRHCGDSFHRYAAYVAHLRSIHDDHETLLFKPQLQEEECAICKKTFSNVSLHYKHHLNFKCNVCQKYILSEKLFYEHACNDPNADSGLVVEYPDDIAALAVPRYFDESEMRHRDDSPLFTEEYFKEKLGENYNFGENSIDIDDSTLDESILGTDMTDTSMFNQQDTLVSIPDRFFDADTSNQSSSFDNCTPIISSTVSLSLDAGKSMDKSHSIDTTVDNEDSSKSNNDDLFILGDTDVIELDDSVCHESTTVNVDSSQFTNPSCIESIVTDADISAPDNSCCGEPVEDSKDTSALEDSKCIVNNADVSEGRESISVDAVIKIENCNAECTDALPLMDSSENKKDPKLDEELCILSNATVTSESCDGKLSELKTADIYESGCTKVNEVLDQKSNSEKVSVKILDNSISPLNVLNAIDAKSVVAENFDQSSQEMSTPLISENAGIEVDGAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -