Hkul004035.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000032.1:6955631-6960493[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.84 62 4.9 1.6 1 23 380 402 380 402 0.98 2 11 0.0011 0.081 14.0 1.0 1 23 409 431 409 431 0.97 3 11 0.26 19 6.5 0.7 2 23 436 457 435 457 0.94 4 11 0.038 2.9 9.2 0.6 3 23 466 486 465 486 0.97 5 11 0.0053 0.39 11.9 1.1 1 23 493 516 493 516 0.96 6 11 0.00018 0.013 16.5 0.6 1 23 522 544 522 544 0.97 7 11 2.6e-06 0.0002 22.3 1.0 1 21 550 570 550 575 0.93 8 11 0.0093 0.7 11.1 0.5 1 20 583 602 583 603 0.96 9 11 0.032 2.4 9.4 0.9 2 23 613 635 612 635 0.95 10 11 2.1e-05 0.0016 19.4 2.1 3 23 646 666 644 666 0.96 11 11 1.2e-06 8.7e-05 23.4 0.3 1 23 672 695 672 695 0.94
Sequence Information
- Coding Sequence
- ATGAATAGTAGAGGATCTCTGTCGCAAGAACTGACGGAAAATGTGTGCAGGGGTTGTTTGTTTGTGTCTCGGAACGAATTGTTCCCCGCTGATGACAGAACTTTAAACTATTTTACGGAAATATCTAAAGTAAACGTATCCAACGTTACCCCACTACCCCGAAGATTCTGCATTAACTGTCTGAAAAGCATTAATCAGTTAGTAAAGTTTAAAAAGAGATGTCAGCAGTCCAACAAAATTCTGTCTCGACTTATTCGAGCGAGCCATTCTTACCATGGTCAGTTCGATCTAAACGATGTACGCAAAGAAAGACTAAAATTCTTAGAAGAAAATAAGCCATTGACACTATCATACATGTTGACAGTTGAATGTCTTGAAACAAATGAAGTTGATAAACAGCTGAATGTCTTTACGAATAACATAAAAAACAGGCACAGTCTTTATTCTGAAGAGACTGATAACAATGAATCATCAAATATAGACTATAATATATCTCGTAGTAACACACCTAATTCTGATGATGAAAATCTCATTGATCTTGTAAATAACTCGTGTCCAGAAAAAAATTACAATGATATCAGAGACAAGTTCTTTGTGGTGGATTCGCTCAAACTAAAAATGGGGAAATGTGTTAATTCTAATTTACCTATGCAAGTGTACTTTGATTCAGCTGTGAAAACAGAATTGAATGCCGATTTCGACGCTTGTGTAAACTTTGACAGTAATTTTGAAGGGACTGTATTATCTCCCAGTATTAAAAGCGAACTGTCGGACACCGAAAATGAAATCATACGACAGTTGAGCAAGAAAAAGATTTCAAAAAAGATTGTATCGCTAAGTTCTAGAAGAAAATCTTTAAAATTAAAGTCTAATAAAAAAGATGGAATCCTCACACGCAATAGGCTGTCAAAAAAAGATGCCAAAAATGGTGTAGAAAAATTAGAAAGACAATTAAGAGAAAAGTCTCGCCGTAAAACAAGCGCTAGTGAAATTCTGCGAAAACCGCCCGAGAAGAAAGGGCGGAAGATCTATTACACGTTTGACGAAAACAGTGTCAATATTTTAAGGCCTAGTGTCGAAGAGCAGATGCAAGAGTTAGACGATGCAAGGAAAACAAAGAAATTTTTAGAAGCCCAATATAAATGTCAGTCGTGTGCGAAGTGGTACACTTATGAACACAGTTGGAAAGCTCATTTAGCAAGACACGAAGAGTCAGCCGGAGAATATGTGTGCTGGATCTGCCAGCAACGTTACGCCACGAGCAACAGCCTCCGCAGTCACGAGCACGTCCACAAAGAGAGGCTTCAATGCAAGCAATGCGGCAAGATCATGTGCGGGAGGTCTGCAATGTCCGAACACGTCGCCAGACACACGGGAACAGCCCTCACTCCAATTTGTAATGTCTGCGGGAACATCAGCATGACCATGACAAGTTATTACAAGCATATGAGGACTCACAAGCCAGAGCCGTTGGAATACAAATGCACTTTCTGCCCGAAGACTTTTCAATACTTGAACAGCCGTAATGATCATATAGCACGCGCTCATACTGGCCGGAAAGATTTCATCTGTAAAGTTTGCAACATGAGTTTCGTAAACCGGAATGGGTTGCGTTCTCACTCCATCACCCATTCGGATCGAAAAGATTTCTACTGCGTGGAATGTGACAGGAGCTTTAAGACTAAGTCTGCCCTCACAAAACATCTCAACGTTACGTCCAGTCACGGAGATCCCACCAAACTAAGATTCAAGTGCGATCAATGTGAGAAGCGGTATGATACCATCAGAAAACTTAAGCTTCACATTGATTGTACTCATCTGCACATCTTCAAGTGGTCCTGTGACAAGTGCCCTGCCAAATTCCTGTCGTCCAGCGGATTGAGGCATCACCGGGAACGGATACACATTGGCAAAGTCCTTCCCAAAAAGCACCTATGTAACTCTTGCGAGAAGGCGTTTACGACCAAAGCCATGCTCCGTAAACATATCCTCACTCACACAGGAGAAAAACCTCACGCCTGCGACATCTGCGGTCGGCCTTTTAGACAAAAATCAGCCCTCGAAACACACATCAAGTTGGTACACCTGAAGTTAAAGAGACCATTCAACAAAAGGAATACCAACAAAACAGAAATCAGTATTATAGACCAAGAGAGAACACTGCCCATTGACGGTGGAGTTAAATCAACTAGTGAAAATGACAGTGATGAACATAGATAA
- Protein Sequence
- MNSRGSLSQELTENVCRGCLFVSRNELFPADDRTLNYFTEISKVNVSNVTPLPRRFCINCLKSINQLVKFKKRCQQSNKILSRLIRASHSYHGQFDLNDVRKERLKFLEENKPLTLSYMLTVECLETNEVDKQLNVFTNNIKNRHSLYSEETDNNESSNIDYNISRSNTPNSDDENLIDLVNNSCPEKNYNDIRDKFFVVDSLKLKMGKCVNSNLPMQVYFDSAVKTELNADFDACVNFDSNFEGTVLSPSIKSELSDTENEIIRQLSKKKISKKIVSLSSRRKSLKLKSNKKDGILTRNRLSKKDAKNGVEKLERQLREKSRRKTSASEILRKPPEKKGRKIYYTFDENSVNILRPSVEEQMQELDDARKTKKFLEAQYKCQSCAKWYTYEHSWKAHLARHEESAGEYVCWICQQRYATSNSLRSHEHVHKERLQCKQCGKIMCGRSAMSEHVARHTGTALTPICNVCGNISMTMTSYYKHMRTHKPEPLEYKCTFCPKTFQYLNSRNDHIARAHTGRKDFICKVCNMSFVNRNGLRSHSITHSDRKDFYCVECDRSFKTKSALTKHLNVTSSHGDPTKLRFKCDQCEKRYDTIRKLKLHIDCTHLHIFKWSCDKCPAKFLSSSGLRHHRERIHIGKVLPKKHLCNSCEKAFTTKAMLRKHILTHTGEKPHACDICGRPFRQKSALETHIKLVHLKLKRPFNKRNTNKTEISIIDQERTLPIDGGVKSTSENDSDEHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00800423;
- 90% Identity
- -
- 80% Identity
- -