Hkul011870.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000004.1:8687810-8695021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 9.2 7.6 0.0 1 23 121 144 121 144 0.95 2 11 0.011 0.8 10.9 3.9 1 23 155 177 155 177 0.98 3 11 0.036 2.7 9.3 1.0 2 23 188 209 188 209 0.93 4 11 0.19 15 6.9 6.3 3 23 217 238 215 238 0.95 5 11 0.0081 0.61 11.3 2.7 1 23 393 415 393 415 0.97 6 11 0.0011 0.079 14.1 2.4 1 23 421 443 421 443 0.96 7 11 8e-06 0.0006 20.7 4.6 1 23 453 475 453 475 0.97 8 11 1.6e-05 0.0012 19.8 3.7 3 23 494 514 492 514 0.96 9 11 1.9e-05 0.0015 19.5 0.8 2 23 521 542 520 542 0.96 10 11 9.5e-07 7.1e-05 23.6 1.2 1 23 548 570 548 570 0.98 11 11 0.0016 0.12 13.5 0.1 1 21 576 596 576 597 0.94
Sequence Information
- Coding Sequence
- ATGATAGATCTATTCGATACTCGTCGAAAAATATCCCAAATAGTGATGACATGCTCCGATGTCAAGGTTATCAAGGATGATGGGTTGCCGACGCAGATATGTAATCCATGTATTAAACAAGCTCAGCTTGCTGTCAGCTTCAAGTACAAATGTGAGCTTTCTGACGCCAAATTACGTAATTATATTACAAACACTCTCAATGTGCCATCGTCAGTTCTGGATATTAAAGAGGAATTATGCGCATTTGAAGATCTAAGTGATTTCCTTAAATATGAAATCCCTCTTGCAAGTGCTGAAGATGTCAGGTCAACTAAAGATGATGAGAATACTAAAAATCATACAACAAGCATTCTACAGACTTATGAGTGTGCCATTTGTAAAGAAGCGTATGACTCTACGAAAGTTCTTATCGACCATGTTATACGGAATCATACCAATTATGTCAAAGAGGAAATGGAAAATTACTCGTGCAATATCTGCAGAAAAAAATTCAGTGAAGAGTTTGACTTAAAATGCCATCAAATAACACACAAAGAATTTGCCATAGATAAAAAAATCAACACCTGTCCTATTTGTCATGAGCAGTTTCCAAAACACGAGGTTTTACTAAGGCATGTTGGGTACCATCTTGATGAATCGGAATTTGGGTGCAGTAAATGTGATTGTTTCTACACATCAAATCTGCATCTCAAGAGACACAATCAAAGAATGCATCCTCCAGAAGCGAAGTCAAGTTCACACAAGAGTGATGCACCCCCATTGCCAAATAATGTCACAGTCAAAACTGAACCTGAGAATAATCCAGAAGAGGTTGAAAATCCTTTCGACACATACCCATCAGACGATAATGATTTCAGCTTGCAGACGGATGATTTCCCAACCGCCATCGACCTTCAACTAAATGATAGCCACCATAATGATGATTCCAATGATTCCGACTATGATGCTGATAAATTACTCTCTGAAATGATTGGAAAAAGTCATAAAAAGCATCATAAAAACAAAAGAAAATCCATCAAAGAAGTTGATATCAAAATTGAACCTGAAGAGAATGATAGTCTAGATAATATTCTGAATGACAAAAGATCATACAGCAAGGAAAAGAGCAAACATCGAAAAAAGAGAAGCAGCAAGACAGATAAAGCTTTGAATGACAGCCATAAAATTGCAAAAAAATTCTCATGCGATCAATGCCCGAAGAAATTTTTAAAACGAGAACTCTTAACCGATCACATTAAACATCATTCTGGCGAAAGATCATACCTTTGTTCCAAATGTGGGAAAGGATACTTCAAACAACTGCATCTTGACAAACACATGGCAACTCACCTTAATGACCATGTTGAAAAACCGCTGCACATATGCCCTCTTTGCGGGAAGGTTGTGAAACATTCTAACCACTTGCAATCCCATATGAAGACCCACAACGGTAAAGGTGTTGAACCTCAGTCCTCCAATCCAAATAAGAAGATGCATTTATGTTCGACTTGTGGAAGATCTTGCAGCAGCCTATCGAACctggcagtccacatgagaaggcacaccggcaccatgacttgcgtctgcaaaatatgcggcaaaggCTACCCTCGCACAACTGATCTTATTCTACATATGAGGCAAcacactggtgaacgaccttttgtttgctgcatttgcaataaaggcttcgctcgctctgataaattagcaattcatatgcgcacgcatacagGAGAAAAGCCGTATATATGCAATTCATGCGGAAGGGCATTCGCCCAGTCAAACGATCTCGGAGCTCACAAGAAAAGAAACAACTGCGGGCAAAACCAAAACACGACACCTGCGATCTCTCGCTCCGGCATTATGACATCGGGTCTGAGCAATAATCTATCTGCCGCCAACACTCTTCTCAACGAGAACCACCTCATGCTTCTATCCCAGAATAAGGCTCTGCACGTCTCCCCTGTGGAATCATCACACAATCCAGATGACATCTCTAACAAGCTGAAAAGAAATGTCAGCAATCAACATTCTAAAGCTTTGTCGTTGGCAAATAATACAACCGCACACACCAGAGCTTTTGAATTGGCCGCTGCAGCAGCGGTTTCTAATAATTTGTTGATTGTCTCCACAAACAATGCTCAAAATAAAGTCATGGATCTTGCAGACGTTCAACAGGTTAGAAATGTTGCCAGTGTGGGAAAGCAGAACTTAACAGTGTCAGGACTGATGGCAACACAGAGAGCCCTCGAAATAGCGAACCACAATAGCATTTTAGCTGCTCAACAGCAAAGGGCGGAATATACCGATTACACTGCTGCTACGTTACTTCAAGTGCAGTCTGCGCATTTTTTATTAAATAAATTAAATGAATAA
- Protein Sequence
- MIDLFDTRRKISQIVMTCSDVKVIKDDGLPTQICNPCIKQAQLAVSFKYKCELSDAKLRNYITNTLNVPSSVLDIKEELCAFEDLSDFLKYEIPLASAEDVRSTKDDENTKNHTTSILQTYECAICKEAYDSTKVLIDHVIRNHTNYVKEEMENYSCNICRKKFSEEFDLKCHQITHKEFAIDKKINTCPICHEQFPKHEVLLRHVGYHLDESEFGCSKCDCFYTSNLHLKRHNQRMHPPEAKSSSHKSDAPPLPNNVTVKTEPENNPEEVENPFDTYPSDDNDFSLQTDDFPTAIDLQLNDSHHNDDSNDSDYDADKLLSEMIGKSHKKHHKNKRKSIKEVDIKIEPEENDSLDNILNDKRSYSKEKSKHRKKRSSKTDKALNDSHKIAKKFSCDQCPKKFLKRELLTDHIKHHSGERSYLCSKCGKGYFKQLHLDKHMATHLNDHVEKPLHICPLCGKVVKHSNHLQSHMKTHNGKGVEPQSSNPNKKMHLCSTCGRSCSSLSNLAVHMRRHTGTMTCVCKICGKGYPRTTDLILHMRQHTGERPFVCCICNKGFARSDKLAIHMRTHTGEKPYICNSCGRAFAQSNDLGAHKKRNNCGQNQNTTPAISRSGIMTSGLSNNLSAANTLLNENHLMLLSQNKALHVSPVESSHNPDDISNKLKRNVSNQHSKALSLANNTTAHTRAFELAAAAAVSNNLLIVSTNNAQNKVMDLADVQQVRNVASVGKQNLTVSGLMATQRALEIANHNSILAAQQQRAEYTDYTAATLLQVQSAHFLLNKLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00800408; iTF_00799525;
- 90% Identity
- iTF_00800408; iTF_00799525;
- 80% Identity
- -