Hkul026467.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000040.1:759549-772114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.22 12.7 0.8 2 20 281 299 281 302 0.94 2 13 0.011 0.82 10.9 2.3 1 23 306 328 306 328 0.95 3 13 2.3e-07 1.7e-05 25.6 0.7 3 23 335 356 333 356 0.95 4 13 0.16 12 7.2 0.5 1 23 363 386 363 386 0.91 5 13 0.054 4 8.7 4.8 1 23 393 416 393 416 0.98 6 13 0.014 1 10.6 7.7 1 23 422 444 422 444 0.96 7 13 5.1e-06 0.00038 21.4 1.6 1 23 450 472 450 472 0.98 8 13 0.00032 0.024 15.7 4.9 1 23 504 526 501 526 0.93 9 13 0.00011 0.0084 17.1 3.2 3 23 533 553 532 554 0.95 10 13 0.014 1.1 10.5 1.6 1 23 561 584 561 584 0.96 11 13 0.00034 0.025 15.6 5.9 1 23 591 614 591 614 0.98 12 13 0.0065 0.48 11.6 7.6 1 23 620 642 620 642 0.98 13 13 8e-06 0.0006 20.7 3.6 1 23 648 670 648 670 0.99
Sequence Information
- Coding Sequence
- ATGTATGAAGAAACTATGTACCATCTCAGAGAAACAGAAGAGCGAAAGCAGTCTCACTGCCAGAAAGCGGAGTCTGGTTCAACTTCCAAAACGGTCCCTAGTGCTCCAATGTCGATTTCAAGCCTACAAGCGGCCACACCGTCTGCGCAGGTTGCATCAGTTTGTCACTGTTGCCTTTCCACCAAAGACCTACGCAGCATTATAAAACCGTACATGTTTCATGGGAAAAACGAAAACTACTCCATGATGTTGGCCACGTGTTTCATTCCCGGGCTGGCTTCCGATGATGGGCTTATATGTTCGGACTGCGTTCGTAGGCTGCGGGCTTCTCTGACGTTTCGACAGTGCGTAGAATCAGCTAAAAAATACCTCCAGTCTCAAGATTTTGCATCGCGTCTAGCTAAAGAAACATCTACCACTCAGCAGCAACAACAAGAATCACCCAAAATTGGCAAGAAAATTCCACCCGTCAATGTAACAGACCCAAGAGTCTGCAAAGAGACATCAAAAAAACCTGTTCCAGAAGATTCAAGTGATGAATCAGAGTCGTATTCTATGAGTAATGATGACCAATTTAGTGATTACATACTTCCTGAAGATGTGTCTCAACAAGCAACATTGCAGCCGGAAATTAGTCAACCGATACCAGAATCAAAGCCGGAAGAAAATGAGACAATCCCAGAAGAGAATCCTCAAGACTCAGAGTCTTCATCTACGGAAGAAGACTTTGAAGAGTTTTTCGGAGCTGCTACAGAGGCGCCGCGCAATACTTTTAGTAGAACAGAATTTGATGTCGGAGAGCAAAGAACTCTTCCGTATGTATTGGACAACACCGACAGAACTTGTGAAATCTGCCACAGAGAGTTTAGTTTTTTTGGAGAACTGCTGAAACACATGCCTGAACATTATCCGAATCACATCTGCGACATTTGCGGAAAGATATGCGCCACCCGTAAGAGTCTGATATTCCACGCCAAAACCCACACCGACGTCCGCCTGGACTGCTCCATGTGCGACAAGTCTTTTAAAAACAAATCCAATCTGAATGCTCACGTCAAAGTCCAGCACAAAGGCGAGAAGATATTGTTCAAATGCTCCCTGTGCGGTGAATTTTTGAACACCTATAATGCTAGGATCAAACATTTGGCGGAGAAACACGGACGGGAGGACAAAGCCTACAAGTGCATGCAGTGCTCTTGCAAGTACCGCCTCGGCAGCCACCTGAGGGCGCATGTGCGGCGTGTGCATCTCCAggagaagaatcacaggtgccatgagtgcggtctctcgttcttcacgcgaaagtgcctcgagaatcataacataaaacactcgggcgagagaaacttctcctgcagcgtttgcaataagagctacggcagaaaagaatcgttgaggcagcacgttaagactcacgaaatcgacaagggattcccgcccgATAATAGTTTCATGCGGATGCCCGACGAACGTGACTCCAACCGACCGGCTATGGATAGTTTCCCGTGCCACATATGCGATGTGTGTGGTAAGGTGTGTCAAAACAGAAAGAGCCTGTCTGCGCACACTAGAACTCATTCCACCGTCCGCGTAGATTGTGAACACTGCGAGAAGTCTTTCAAGAGCAACGCCAAACTGATGGAGCACGTCAAAGTTCACCATAGGGGGGAGAAGCTATATTTTAAATGCTCACAGTGTGGTGAAATGTTGAAGACATACAATTCTAGAAAAATCCACATGGTAAAATACCACGGTTACGAAGATAAGGCTTACAAGTGTAACCAGTGCTCGTGTAAATACCGACTCAGCAGCCATCTCAGAGCGCATATTCGCCGGGTTCATCTGCAAGAAAAGAATCACAAGTGCCAGGAATGCAATAGGTCTTTCTTCACTCGATATTGTCTCGATACCCATGCCCGAAAGCATTCTGGAGAAAGAATTTTCCAGTGCGAAACTTGCAACAAGACCTACTACAGGAAGCAATCACTGAGAGAACATTTGAAGACACATGAGGAATAA
- Protein Sequence
- MYEETMYHLRETEERKQSHCQKAESGSTSKTVPSAPMSISSLQAATPSAQVASVCHCCLSTKDLRSIIKPYMFHGKNENYSMMLATCFIPGLASDDGLICSDCVRRLRASLTFRQCVESAKKYLQSQDFASRLAKETSTTQQQQQESPKIGKKIPPVNVTDPRVCKETSKKPVPEDSSDESESYSMSNDDQFSDYILPEDVSQQATLQPEISQPIPESKPEENETIPEENPQDSESSSTEEDFEEFFGAATEAPRNTFSRTEFDVGEQRTLPYVLDNTDRTCEICHREFSFFGELLKHMPEHYPNHICDICGKICATRKSLIFHAKTHTDVRLDCSMCDKSFKNKSNLNAHVKVQHKGEKILFKCSLCGEFLNTYNARIKHLAEKHGREDKAYKCMQCSCKYRLGSHLRAHVRRVHLQEKNHRCHECGLSFFTRKCLENHNIKHSGERNFSCSVCNKSYGRKESLRQHVKTHEIDKGFPPDNSFMRMPDERDSNRPAMDSFPCHICDVCGKVCQNRKSLSAHTRTHSTVRVDCEHCEKSFKSNAKLMEHVKVHHRGEKLYFKCSQCGEMLKTYNSRKIHMVKYHGYEDKAYKCNQCSCKYRLSSHLRAHIRRVHLQEKNHKCQECNRSFFTRYCLDTHARKHSGERIFQCETCNKTYYRKQSLREHLKTHEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799506;
- 90% Identity
- iTF_00799506;
- 80% Identity
- -